Homology
BLAST of mRNA_S-firma_F_contig10002.65.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE) HSP 1 Score: 131 bits (330), Expect = 4.070e-33 Identity = 84/120 (70.00%), Postives = 100/120 (83.33%), Query Frame = 2 Query: 2 TGSHDEAVAAAAAARASEELQQELQEARDALRKEEAGKAVLKEQMIAGVSKFRALEAQEKASRKRLEQAEAEQRVAVSAAVKMKEKDHERKLKFLQEENVQLFSEITASKAKMAEYTAEI 361
TGSHDEA AAAA EELQ+EL+E R+ALR EEAG+A LKEQM+AGV+KFRALEAQEK++R+RLE+A A QR AVSAA+K+KEKDHER+LKFL+EENVQLF EI K K + TAE+
Sbjct: 2596 TGSHDEAAAAAAV----EELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALKIKEKDHERELKFLKEENVQLFKEIGEWKVKTDKLTAEL 2711
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 369 |
| Cds size | 366 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815524.30453-CDS-S-firma_F_contig10002:370..447 | 1622815524.30453-CDS-S-firma_F_contig10002:370..447 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10002 371..447 - |
| 1696949386.8423226-CDS-S-firma_F_contig10002:370..447 | 1696949386.8423226-CDS-S-firma_F_contig10002:370..447 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10002 371..447 - |
| 1622815524.3171442-CDS-S-firma_F_contig10002:1306..1595 | 1622815524.3171442-CDS-S-firma_F_contig10002:1306..1595 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10002 1307..1595 - |
| 1696949386.8542411-CDS-S-firma_F_contig10002:1306..1595 | 1696949386.8542411-CDS-S-firma_F_contig10002:1306..1595 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig10002 1307..1595 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10002.65.1 >prot_S-firma_F_contig10002.65.1 ID=prot_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=122bp
HGLPRRGGGGGGGRQGVGGAPAGAAGGPRRAAEGGGRQGRAQGADDRRGV
QVQGPRGPGEGLQEAAGAGGGGAEGRRERGREDEGEGPRAQAQVPAGGKR
AAVQRDNGEQGQDGGVHGRDKD back to topmRNA from alignment at S-firma_F_contig10002:369..1595- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig10002.65.1 ID=mRNA_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1227bp|location=Sequence derived from alignment at S-firma_F_contig10002:369..1595- (Sphaerotrichia firma ET2_F female)
CACGGGCTCCCACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGT
CGGAGGAGCTCCAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAG
GAGGAGGCCGGCAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTC
CAAGTTCAGGGCCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGG
AGCAGGCGGAGGCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATG
AAGGAGAAGGACCACGAGCGCAAGCTCAAGTTCCTGCAGGTGGGTTTGTG
TGTGTGTGTTTTGTGCCTTGAGATGCTTCGAAAAGACGAAGCTCCGTGAG
GGCCGGTTGGGCAAGAGCCAAACCTGAGACGAGAACGGAGACGGCGAGCG
GCGTGCTTTGTTTGTTTGTTTTGTTTGTTTGTTTTGTTTGTTTGTTTCTC
ACGTTAAGCTCTACATTCCACAAACATCCATGGGAGCCCGTGGTCACAAA
ACCTGGGCGCACTCGTCACCGCAGAGAAACTCAGCAAAAACATGGTTCGT
GTGCTTGGTGTGGTGCTTGTATTATACCAGGTATTGTATTGTATTGTATT
GTATTGTACGGAAAAGGGTTCGTTTTTGTTTTGCACTGGGTGCTTGGTTC
ATTCGTTTGTTATCCCGCCGGCTTCACGTAAGGGCTGTTGTCTTGTGATG
AATTTTCTACAAAACGTCAGCCGTGTATGTACGTCCGTCCTGAGAAAACA
TTGTTCCAGGGGTTGTCTTTTGTACCCTCCGAGGGGGTGCAACTGTTTTA
TTTAGAGGCCTTGTCGGAGAAGTGCGCGTGTACAATACGCCGTCTTGGTT
CGTACATCGTTGATTGTAGATTACGCTTGAGGCGGTTCTGAGCGATGTGC
TCGTATCGTACGAGTAGTCCAGATCAGGTTATGTTATTTCTTTCAGCCTC
CCCTTTTATGTTGCGATGTGCATGGGTCGTCCACAGTACGTGTACAGCAC
AGCAACGTACAGCAGCGTTGGTTGTTGTCTGCTGCATCACCAGTTCTCGT
CGCCGGCGATGGACCGGCAAGCCAAGGACGGCACGTTCATCTCGTTTTTG
TCTGTCTTTGTTTGTCTTTTGTTTGTCTTTTGTTTGATGCCTCGGCAGGA
GGAAAACGTGCAGCTGTTCAGCGAGATAACGGCGAGCAAGGCCAAGATGG
CGGAGTACACGGCCGAGATAAAGACCC back to topCoding sequence (CDS) from alignment at S-firma_F_contig10002:369..1595- >mRNA_S-firma_F_contig10002.65.1 ID=mRNA_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=732bp|location=Sequence derived from alignment at S-firma_F_contig10002:369..1595- (Sphaerotrichia firma ET2_F female)
CACGGGCTCCCACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGT
CGGAGGAGCTCCAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAG
GAGGAGGCCGGCAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTC
CAAGTTCAGGGCCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGG
AGCAGGCGGAGGCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATG
AAGGAGAAGGACCACGAGCGCAAGCTCAAGTTCCTGCAGCACGGGCTCCC
ACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGTCGGAGGAGCTC
CAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAGGAGGAGGCCGG
CAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTCCAAGTTCAGGG
CCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGGAGCAGGCGGAG
GCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATGAAGGAGAAGGA
CCACGAGCGCAAGCTCAAGTTCCTGCAGGAGGAAAACGTGCAGCTGTTCA
GCGAGATAACGGCGAGCAAGGCCAAGATGGCGGAGTACACGGCCGAGATA
AAGACGAGGAAAACGTGCAGCTGTTCAGCGAGATAACGGCGAGCAAGGCC
AAGATGGCGGAGTACACGGCCGAGATAAAGAC back to top
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