mRNA_S-firma_F_contig10002.65.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10002.65.1
Unique NamemRNA_S-firma_F_contig10002.65.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10002.65.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.070e-33
Identity = 84/120 (70.00%), Postives = 100/120 (83.33%), Query Frame = 2 
Query:    2 TGSHDEAVAAAAAARASEELQQELQEARDALRKEEAGKAVLKEQMIAGVSKFRALEAQEKASRKRLEQAEAEQRVAVSAAVKMKEKDHERKLKFLQEENVQLFSEITASKAKMAEYTAEI 361
            TGSHDEA AAAA     EELQ+EL+E R+ALR EEAG+A LKEQM+AGV+KFRALEAQEK++R+RLE+A A QR AVSAA+K+KEKDHER+LKFL+EENVQLF EI   K K  + TAE+
Sbjct: 2596 TGSHDEAAAAAAV----EELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALKIKEKDHERELKFLKEENVQLFKEIGEWKVKTDKLTAEL 2711
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10002.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH57_9PHAE4.070e-3370.00Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10002contigS-firma_F_contig10002:369..1595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.30453-CDS-S-firma_F_contig10002:370..4471622815524.30453-CDS-S-firma_F_contig10002:370..447Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 371..447 -
1696949386.8423226-CDS-S-firma_F_contig10002:370..4471696949386.8423226-CDS-S-firma_F_contig10002:370..447Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 371..447 -
1622815524.3171442-CDS-S-firma_F_contig10002:1306..15951622815524.3171442-CDS-S-firma_F_contig10002:1306..1595Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 1307..1595 -
1696949386.8542411-CDS-S-firma_F_contig10002:1306..15951696949386.8542411-CDS-S-firma_F_contig10002:1306..1595Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10002 1307..1595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10002.65.1prot_S-firma_F_contig10002.65.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10002 371..1595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10002.65.1

>prot_S-firma_F_contig10002.65.1 ID=prot_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=122bp
HGLPRRGGGGGGGRQGVGGAPAGAAGGPRRAAEGGGRQGRAQGADDRRGV
QVQGPRGPGEGLQEAAGAGGGGAEGRRERGREDEGEGPRAQAQVPAGGKR
AAVQRDNGEQGQDGGVHGRDKD
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mRNA from alignment at S-firma_F_contig10002:369..1595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10002.65.1 ID=mRNA_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1227bp|location=Sequence derived from alignment at S-firma_F_contig10002:369..1595- (Sphaerotrichia firma ET2_F female)
CACGGGCTCCCACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGT
CGGAGGAGCTCCAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAG
GAGGAGGCCGGCAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTC
CAAGTTCAGGGCCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGG
AGCAGGCGGAGGCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATG
AAGGAGAAGGACCACGAGCGCAAGCTCAAGTTCCTGCAGGTGGGTTTGTG
TGTGTGTGTTTTGTGCCTTGAGATGCTTCGAAAAGACGAAGCTCCGTGAG
GGCCGGTTGGGCAAGAGCCAAACCTGAGACGAGAACGGAGACGGCGAGCG
GCGTGCTTTGTTTGTTTGTTTTGTTTGTTTGTTTTGTTTGTTTGTTTCTC
ACGTTAAGCTCTACATTCCACAAACATCCATGGGAGCCCGTGGTCACAAA
ACCTGGGCGCACTCGTCACCGCAGAGAAACTCAGCAAAAACATGGTTCGT
GTGCTTGGTGTGGTGCTTGTATTATACCAGGTATTGTATTGTATTGTATT
GTATTGTACGGAAAAGGGTTCGTTTTTGTTTTGCACTGGGTGCTTGGTTC
ATTCGTTTGTTATCCCGCCGGCTTCACGTAAGGGCTGTTGTCTTGTGATG
AATTTTCTACAAAACGTCAGCCGTGTATGTACGTCCGTCCTGAGAAAACA
TTGTTCCAGGGGTTGTCTTTTGTACCCTCCGAGGGGGTGCAACTGTTTTA
TTTAGAGGCCTTGTCGGAGAAGTGCGCGTGTACAATACGCCGTCTTGGTT
CGTACATCGTTGATTGTAGATTACGCTTGAGGCGGTTCTGAGCGATGTGC
TCGTATCGTACGAGTAGTCCAGATCAGGTTATGTTATTTCTTTCAGCCTC
CCCTTTTATGTTGCGATGTGCATGGGTCGTCCACAGTACGTGTACAGCAC
AGCAACGTACAGCAGCGTTGGTTGTTGTCTGCTGCATCACCAGTTCTCGT
CGCCGGCGATGGACCGGCAAGCCAAGGACGGCACGTTCATCTCGTTTTTG
TCTGTCTTTGTTTGTCTTTTGTTTGTCTTTTGTTTGATGCCTCGGCAGGA
GGAAAACGTGCAGCTGTTCAGCGAGATAACGGCGAGCAAGGCCAAGATGG
CGGAGTACACGGCCGAGATAAAGACCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10002:369..1595-

>mRNA_S-firma_F_contig10002.65.1 ID=mRNA_S-firma_F_contig10002.65.1|Name=mRNA_S-firma_F_contig10002.65.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=732bp|location=Sequence derived from alignment at S-firma_F_contig10002:369..1595- (Sphaerotrichia firma ET2_F female)
CACGGGCTCCCACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGT
CGGAGGAGCTCCAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAG
GAGGAGGCCGGCAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTC
CAAGTTCAGGGCCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGG
AGCAGGCGGAGGCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATG
AAGGAGAAGGACCACGAGCGCAAGCTCAAGTTCCTGCAGCACGGGCTCCC
ACGACGAGGCGGTGGCGGCGGCGGCGGCCGCCAGGGCGTCGGAGGAGCTC
CAGCAGGAGCTGCAGGAGGCCCGCGACGCGCTGCGGAAGGAGGAGGCCGG
CAAGGCCGTGCTCAAGGAGCAGATGATCGCCGGGGTGTCCAAGTTCAGGG
CCCTCGAGGCCCAGGAGAAGGCCTCCAGGAAGCGGCTGGAGCAGGCGGAG
GCGGAGCAGAGGGTCGCCGTGAGCGCGGCCGTGAAGATGAAGGAGAAGGA
CCACGAGCGCAAGCTCAAGTTCCTGCAGGAGGAAAACGTGCAGCTGTTCA
GCGAGATAACGGCGAGCAAGGCCAAGATGGCGGAGTACACGGCCGAGATA
AAGACGAGGAAAACGTGCAGCTGTTCAGCGAGATAACGGCGAGCAAGGCC
AAGATGGCGGAGTACACGGCCGAGATAAAGAC
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