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Homology
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 1.740e-5 Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
VSRAR L+ L+EGR HAGRWCRW SSAL AA+
Sbjct: 696 VSRAREVLDALDEGREHAGRWCRWASSALVAAE 728
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 4.000e-5 Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
V+RAR L+ L+EGR HAGRWCRW SSAL AA+
Sbjct: 424 VTRAREVLDALDEGREHAGRWCRWASSALVAAE 456
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 495 |
| Cds size | 495 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815523.2070167-CDS-S-firma_F_contig1000:1281..1414 | 1622815523.2070167-CDS-S-firma_F_contig1000:1281..1414 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 1282..1414 + |
| 1696949385.757097-CDS-S-firma_F_contig1000:1281..1414 | 1696949385.757097-CDS-S-firma_F_contig1000:1281..1414 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 1282..1414 + |
| 1622815523.222365-CDS-S-firma_F_contig1000:1949..2311 | 1622815523.222365-CDS-S-firma_F_contig1000:1949..2311 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 1950..2311 + |
| 1696949385.8377447-CDS-S-firma_F_contig1000:1949..2311 | 1696949385.8377447-CDS-S-firma_F_contig1000:1949..2311 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig1000 1950..2311 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1000.57.1 >prot_S-firma_F_contig1000.57.1 ID=prot_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=165bp
VSRARVALEGLEEGRRHAGRWCRWVSSALAAADAEGGGGAAGSGGQTAAT
TGPFPAGTPGRGDLVASSSPPSGVTETQGGDDTAGGPVRSSDRVAPPPSS
DSDTGLQQKQQQQQQLLERAGALQEELERRVLATHGTPGETSAGGVPALL
AAVEAGLRLQEEKGG back to topmRNA from alignment at S-firma_F_contig1000:1282..2311+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1030bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)
GTCTCGCGCGCCCGTGTAGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCA
TGCCGGCCGGTGGTGCAGGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATG
CGGAAGGTGGCGGTGGTGCTGCGGGGAGTGGAGGTGAGAGTTTCGGTTGT
TGTTGTTGTTGTTGGTGGTGGTGGTGGGTGTGGTGGTGTGTGGCGGTGGT
TGTTGGCTTGTTGTTTTTGGTGGCGTGGTGGTGTCGGTGTCGGTGTTTGA
TGGCTGTTGTTGGTGGCGGGGGTTGTTGTAGGCGGTGGTGGTGATGGTGG
TGGCAGTTGTGTCGTTGGTTGCCGCGGTTTTTAATAAATTTTCTACATCC
GTCAGCCGTATACGTCCGTCCTGTGAATAAGTCGTTCAAGGGGGACTGTT
GTATACACTCACCCTCCCCGTCCCAGCCAACAGCACCAAATCCGATGCTG
TTTTTTATTGCGCAACGTCGGTGGCCAACCGCAGCATCACCGGGAAGACA
CCCGTCCGTACAACAGAGGTATCTTAGCTCATACGTGTAGAAAATCTTGA
TTCCGACACCATCCGTGGTGCATCTGCTGGAGACAGGAGAATAAACTCCT
TACATCCGGCTCGCCATCCTTGCCGCATCCTTGCTGCGTTTCTTGCACTT
CCTCGCAAAACGCATCAGGGCAAACGGCGGCGACGACAGGACCGTTCCCA
GCAGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCTCGCCTCCTTC
GGGGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGGGGTCCCGTAA
GATCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAGCGACACCGGC
TTGCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAAGAGCGGGGGC
TCTGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACACGGGACCCCTG
GAGAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGCGGTCGAAGCG
GGCCTGCGGCTGCAGGAGGAAAAAGGCGGC back to topCoding sequence (CDS) from alignment at S-firma_F_contig1000:1282..2311+ >mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=990bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)
GTCTCGCGCGCCCGTGTAGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCA
TGCCGGCCGGTGGTGCAGGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATG
CGGAAGGTGGCGGTGGTGCTGCGGGGAGTGGAGGTCTCGCGCGCCCGTGT
AGCCCTGGAGGGCTTGGAGGAGGGAAGGAGGCATGCCGGCCGGTGGTGCA
GGTGGGTGTCCTCGGCGCTGGCGGCGGCGGATGCGGAAGGTGGCGGTGGT
GCTGCGGGGAGTGGAGGGCAAACGGCGGCGACGACAGGACCGTTCCCAGC
AGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCTCGCCTCCTTCGG
GGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGGGGTCCCGTAAGA
TCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAGCGACACCGGCTT
GCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAAGAGCGGGGGCTC
TGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACACGGGACCCCTGGA
GAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGCGGTCGAAGCGGG
CCTGCGGCTGCAGGAGGAAAAAGGCGGCGGCAAACGGCGGCGACGACAGG
ACCGTTCCCAGCAGGTACCCCTGGAAGGGGAGACCTCGTAGCCTCTTCCT
CGCCTCCTTCGGGGGTAACGGAAACGCAAGGAGGCGACGACACCGCAGGG
GGTCCCGTAAGATCATCCGATAGAGTTGCGCCTCCCCCCTCCTCCGACAG
CGACACCGGCTTGCAACAAAAGCAGCAGCAGCAGCAGCAGCTGCTGGAAA
GAGCGGGGGCTCTGCAGGAGGAGTTGGAGAGGCGCGTACTGGCGACACAC
GGGACCCCTGGAGAGACTTCGGCGGGCGGCGTGCCGGCCCTGCTTGCTGC
GGTCGAAGCGGGCCTGCGGCTGCAGGAGGAAAAAGGCGGC back to top
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