mRNA_S-firma_F_contig1000.57.1 (mRNA) Sphaerotrichia firma ET2_F female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 1.740e-5 Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
VSRAR L+ L+EGR HAGRWCRW SSAL AA+
Sbjct: 696 VSRAREVLDALDEGREHAGRWCRWASSALVAAE 728
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 4.000e-5 Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 Query: 1 VSRARVALEGLEEGRRHAGRWCRWVSSALAAAD 99
V+RAR L+ L+EGR HAGRWCRW SSAL AA+
Sbjct: 424 VTRAREVLDALDEGREHAGRWCRWASSALVAAE 456 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1000.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1000.57.1 >prot_S-firma_F_contig1000.57.1 ID=prot_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=165bp VSRARVALEGLEEGRRHAGRWCRWVSSALAAADAEGGGGAAGSGGQTAATback to top mRNA from alignment at S-firma_F_contig1000:1282..2311+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1030bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1000:1282..2311+ >mRNA_S-firma_F_contig1000.57.1 ID=mRNA_S-firma_F_contig1000.57.1|Name=mRNA_S-firma_F_contig1000.57.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=990bp|location=Sequence derived from alignment at S-firma_F_contig1000:1282..2311+ (Sphaerotrichia firma ET2_F female)back to top |