mRNA_S-ischiensis_contig13.2918.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig13.2918.1 vs. uniprot
Match: D8LHX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX3_ECTSI) HSP 1 Score: 251 bits (641), Expect = 8.800e-72 Identity = 146/373 (39.14%), Postives = 197/373 (52.82%), Query Frame = 1
Query: 304 NIAVVAVGRPFFVFTIGGMVLSIILGVTALVMGVSEGYFTYELDRCDCVPEGEA--------------------------CAEGVDFMEVGFGWQDMTISGSGSTTTC---------------------------LLDAGYEEGAKFPLADPLGEGFEVNGMPKAAEGFMVMMCITSGLAFLTHSVVKASYVGNGSHCSIGLTTFARLCFLSSLISLALAVSYWWLLDGRFGDDSDSVPARLTEGVLEECSKDWDVTAES--------CPDRPWQLTLGGWALMVAMAQVGLFFITSLGLVWRAPIIEGMLDGSIDDKGNPMQPRRVEVELVVGKALATDGDPDYDIPQNIMYEGNSTMVRPYPLPVTAKQAK 1239
N AVVAVGR FF I G LS + ++++GVS+GYF +E+DRC CV E EA C G DF +V GW++ T T C D Y +F D + E NG +A G + M + + + LT+ ++KASY+ NGSHCSIGL RL L + + A VS+WWL++GRFGD+ ++ L + +EC W TA+ CP RPW T G +M+ + QVGLF + +L +VW+AP +EG+LDGS+D G ++PR VEVE+VVGKALATDGDPDYD +N +Y G +TM+RPYPLP +AK AK
Sbjct: 6 NAAVVAVGRTFFRVAIVGYTLSGLAMFPSVILGVSKGYFEWEMDRCTCVVEQEAAATTGQPIVSSSSLSGTGTTAGASSSCVFGQDFAKVSIGWKEFTYDKLVHTVGCPIATAFYEANPALDDDDLNLDNERSLYFFDEVYPLDGEFQKTDNPTQADESNGGSEAGGGVVAMQVVLTFFSILTYKMLKASYLSNGSHCSIGLALMTRLNLLVGVGTAAAIVSFWWLIEGRFGDEQKALTTALENILFDEC---WGETADDDAAGLQTFCPVRPWTFTGPGLPMMLGIFQVGLFLLMTLYMVWKAPTVEGVLDGSMDPTGVVLKPRVVEVEMVVGKALATDGDPDYDS-ENPLYNGAATMIRPYPLPKSAKAAK 374
BLAST of mRNA_S-ischiensis_contig13.2918.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 152 bits (384), Expect = 8.110e-36 Identity = 106/312 (33.97%), Postives = 153/312 (49.04%), Query Frame = 1
Query: 493 VGFGWQDMTISGSGSTTTCLLDAGYEEGAKFPLADPLGEGFEV-------NGMPKAAEGFMVMMCITSGLAFLTHSVVKASYVGNGSHCSIGLTTFARLCFLSSLISLALAVSYWWLLDGRFGDDSDSVPARLTEGVLEECSKDWDVTA------ES----CPDRPWQLTLGGWALMVAMAQVGLFFITSLGLVWRAPIIEGMLDGSIDDKGNPMQPRRVEVELVVGKALATDGDPDYDIPQNIMYEGNST-MVRPYPLPVTAKQAKGAAVQPQATEPAADEEGGSPTVFQRENFFYVGGHRATSAEAARGG 1374
V GW+ I + ST CL G+E G K + P G+G NG AA+ + + +++ +A + VK SY G GS SIGL A +C L S+ S ++W + G+ GD S+ A L L+ C DWD ES C +PW + +A A+A V + F+TS+ ++ ++ ++EG+LDGS G + PR VE E VG+ALAT DPDYD+ N +Y G + M+RPYPLP + K+ AA P +GGSP ++N G + A GG
Sbjct: 26 VDIGWKSFVIDKAYSTEGCL--DGWE-GTK-DIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEA--LVSPLRKMQGGSPK-HTKDNTLRTGERAGVRPKIALGG 330 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.2918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig13.2918.1 >prot_S-ischiensis_contig13.2918.1 ID=prot_S-ischiensis_contig13.2918.1|Name=mRNA_S-ischiensis_contig13.2918.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=464bp MPNIAVVAVGRPFFVFTIGGMVLSIILGVTALVMGVSEGYFTYELDRCDCback to top mRNA from alignment at S-ischiensis_contig13:595508..605025+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig13.2918.1 ID=mRNA_S-ischiensis_contig13.2918.1|Name=mRNA_S-ischiensis_contig13.2918.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=9518bp|location=Sequence derived from alignment at S-ischiensis_contig13:595508..605025+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig13:595508..605025+ >mRNA_S-ischiensis_contig13.2918.1 ID=mRNA_S-ischiensis_contig13.2918.1|Name=mRNA_S-ischiensis_contig13.2918.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2784bp|location=Sequence derived from alignment at S-ischiensis_contig13:595508..605025+ (Schizocladia ischiensis KU_0333)back to top |