mRNA_S-ischiensis_contig12.2720.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig12.2720.1
Unique NamemRNA_S-ischiensis_contig12.2720.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig12.2720.1 vs. uniprot
Match: E1ZK54_CHLVA (DUF2428 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZK54_CHLVA)

HSP 1 Score: 53.9 bits (128), Expect = 2.510e-5
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   22 AARRA-TLTEFFRRHPSLHPFLLQHLRQATAEAMEDGAEPANRVTIGRLSGGXXXXXXXXXXXGLHPVLYPILLLLSRL--TPELRVEGVGG 288
            AA+RA T  +FF RHP LHPFLL+ L  AT EA++ GA  A  +          XXXXXXXXX +HP L+P+L+LLSRL  +   R+ G  G
Sbjct: 1548 AAKRAPTAADFFARHPQLHPFLLRQLAAAT-EALDGGAAAAGSIXXXXXX----XXXXXXXXXXMHPSLFPVLVLLSRLRASQHNRLSGSSG 1634
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BLAST of mRNA_S-ischiensis_contig12.2720.1 vs. uniprot
Match: A0A6H5JLY3_9PHAE (DUF2428 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.590e-5
Identity = 44/85 (51.76%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 GSASARRAARRATLTEFFRRHPSLHPFLLQHLRQATAEAMEDGAEPANRVTIGRLSGGXXXXXXXXXXXGLHPVLYPILLLLSRL 255
            GS   R A    T   FF++HP LHPFLL  L +AT    E G   +     G   G   XXXXXXXXX +HPVLYPILLLL+RL
Sbjct: 1141 GSKRPRSARAAVTAEAFFQQHPKLHPFLLSELERATNCTPEAGTGSS-----GEKEGQRAXXXXXXXXXEMHPVLYPILLLLARL 1220
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig12.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
E1ZK54_CHLVA2.510e-550.00DUF2428 domain-containing protein n=1 Tax=Chlorell... [more]
A0A6H5JLY3_9PHAE4.590e-551.76DUF2428 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig12contigS-ischiensis_contig12:2552779..2554614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size498
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.6811886-CDS-S-ischiensis_contig12:2552780..25532071622815635.6811886-CDS-S-ischiensis_contig12:2552780..2553207Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2552781..2553207 -
1695739818.4403992-CDS-S-ischiensis_contig12:2552780..25532071695739818.4403992-CDS-S-ischiensis_contig12:2552780..2553207Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2552781..2553207 -
1622815635.69549-CDS-S-ischiensis_contig12:2554546..25546141622815635.69549-CDS-S-ischiensis_contig12:2554546..2554614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2554547..2554614 -
1695739818.4515347-CDS-S-ischiensis_contig12:2554546..25546141695739818.4515347-CDS-S-ischiensis_contig12:2554546..2554614Schizocladia ischiensis KU_0333CDSS-ischiensis_contig12 2554547..2554614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig12.2720.1prot_S-ischiensis_contig12.2720.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig12 2552781..2554614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig12.2720.1

>prot_S-ischiensis_contig12.2720.1 ID=prot_S-ischiensis_contig12.2720.1|Name=mRNA_S-ischiensis_contig12.2720.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
GSASARRAARRATLTEFFRRHPSLHPFLLQHLRQATAEAMEDGAEPANRV
TIGRLSGGGGGGSSGLGGGGLHPVLYPILLLLSRLTPELRVEGVGGGGGG
AAAAKATPAGVATAVASGPVITDDGPGPGPAGGGPGGSGPGGSGPGEAFV
PAVLRCRGSCNFYVR
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mRNA from alignment at S-ischiensis_contig12:2552779..2554614-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig12.2720.1 ID=mRNA_S-ischiensis_contig12.2720.1|Name=mRNA_S-ischiensis_contig12.2720.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1836bp|location=Sequence derived from alignment at S-ischiensis_contig12:2552779..2554614- (Schizocladia ischiensis KU_0333)
GGGTCCGCGTCGGCGCGCCGGGCCGCGCGCCGGGCGACCCTGACCGAGTT
TTTCCGGCGGCACCCCAGGTGCGGTACAGCTGTAGGTGCTGCGATTTTGT
TGTGGCTGCACTTGCCATGTGTGGAGGGACCGCTTTCTTTTGGGGGGGGG
GGTGATGGTGATGTTGGTGGTGCTCGTGGTCCTCCTGCCCCGCCCCCCAC
TTGTTTTGTGTTGGTGGTGGTCGTTGTCCCGTGAACATACCCGACGGCGT
GGGTCGATTTTGTATTGTGCGAAGCGCTTCGAAGTAAGTACACTAAGTAT
GAAGTCGGCGGTTGCTAGACTGCCGGAGTATCTTCCGACCTGTTTTTCTA
AATGGTAGAGGACGACGACGGCGCGCACGCGTGTCTCGCTATATGCGCCG
GCACTGCATCGTTTCACTACTACAGTCAAGGGAACTAGTTAGAAAAGGAT
TTTCAGATTTTCGGATATCGACCACGGCTGAACCGCTGCCACGATCGCGC
CGCAAATCGACATGGAATGAGGCGGGGGCACGGGCAAGACAGTCCCATCT
CCTCAGCGCCATACTCTCGAAAACGGACGGCGAAGGTGCCCCTGTCATCT
GGAAAAGACGAGTTGTAACTACGTCGACTGACTGCAGTACAGGAGTAGTA
TTTCGCCCCCCCTCCAAGGGTGAGCAAAGGGTGGCGCCTCTGTCTAGGCG
TGGCGGGGTCTCTAGGGGCTTTCGCTCGAACCGTGATTCGCTCAGCACTG
TGTGAACCTTGACCCGCAGGAGGGTTAACACGCGTGCTCGTGGTAGCTCC
CCATACGTAGTTCGGTATACACCTCCCAGGGGGGGGGGGGGTTAAGGATG
GGTTCTTCACTGGGCTTGCCCCGAGCAGCGTCTACATGCCGCTCGAGTAC
AGTGCTCCATGCCGCAAAAAAAGGGGTACATTGTACAGGCACGTGCTGCT
ACTGTACTGCTGCTTTATATGCATGTGCTGTGCTCGTGCTGTGGAGCACT
TCAAGGTACCGTACATGTGCTCTTGACCGCTGCTCTCCTCGTCGAGCCCT
CAAAGTTCTGCTCTGGCCATGATACCTCCAAGCACCCTCCTCCGAGTACA
GGCGTGTACATACAGTACAATAGTTTACCCGCTTTGGACTCTCCGAGCTT
TTCCAATCTCACACACGTGCAATTGTACCTCGTAACAATTTCTACGAATC
GCCGAGCTTTCCACAAGTGACGGGCAGCCCAGGGCGTTCTTGCACCCCTC
GCCGTGGCAGCAATCACCAATCATCAAGCATCGGCATGATGATGACCCCA
TCGGGTTGGCCCGCCCCAGGCACCACACCACCGCAGCCCACCCGCAGTTT
CAGCCGCCACTTCAATGCCGCAATATCCCCCCCTCTCCCCCCCTCAACCC
GCCGCAGCCTGCACCCATTTCTCCTGCAGCACCTCAGGCAAGCAACGGCG
GAGGCCATGGAAGACGGGGCTGAACCAGCCAACAGGGTTACCATAGGCAG
ATTGAGCGGCGGCGGCGGCGGCGGCAGTAGCGGCCTGGGTGGGGGCGGCC
TGCACCCTGTCCTGTACCCCATCCTCCTCCTCCTGTCCCGCCTCACCCCG
GAACTGCGAGTCGAGGGGGTCGGGGGTGGTGGCGGCGGCGCTGCAGCAGC
CAAGGCAACGCCTGCCGGGGTCGCAACGGCGGTCGCGTCGGGCCCGGTGA
TCACGGACGACGGGCCTGGGCCCGGGCCCGCTGGCGGTGGGCCGGGAGGC
AGTGGCCCCGGGGGCAGCGGGCCTGGGGAGGCGTTTGTGCCGGCAGTCCT
CCGTTGTCGGGGCAGCTGCAATTTCTACGTGCGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig12:2552779..2554614-

>mRNA_S-ischiensis_contig12.2720.1 ID=mRNA_S-ischiensis_contig12.2720.1|Name=mRNA_S-ischiensis_contig12.2720.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig12:2552779..2554614- (Schizocladia ischiensis KU_0333)
GGGTCCGCGTCGGCGCGCCGGGCCGCGCGCCGGGCGACCCTGACCGAGTT
TTTCCGGCGGCACCCCAGGGGTCCGCGTCGGCGCGCCGGGCCGCGCGCCG
GGCGACCCTGACCGAGTTTTTCCGGCGGCACCCCAGCCTGCACCCATTTC
TCCTGCAGCACCTCAGGCAAGCAACGGCGGAGGCCATGGAAGACGGGGCT
GAACCAGCCAACAGGGTTACCATAGGCAGATTGAGCGGCGGCGGCGGCGG
CGGCAGTAGCGGCCTGGGTGGGGGCGGCCTGCACCCTGTCCTGTACCCCA
TCCTCCTCCTCCTGTCCCGCCTCACCCCGGAACTGCGAGTCGAGGGGGTC
GGGGGTGGTGGCGGCGGCGCTGCAGCAGCCAAGGCAACGCCTGCCGGGGT
CGCAACGGCGGTCGCGTCGGGCCCGGTGATCACGGACGACGGGCCTGGGC
CCGGGCCCGCTGGCGGTGGGCCGGGAGGCAGTGGCCCCGGGGGCAGCGGG
CCTGGGGAGGCGTTTGTGCCGGCAGTCCTCCGTTGTCGGGGCAGCTGCAA
TTTCTACGTGCGGCCTGCACCCATTTCTCCTGCAGCACCTCAGGCAAGCA
ACGGCGGAGGCCATGGAAGACGGGGCTGAACCAGCCAACAGGGTTACCAT
AGGCAGATTGAGCGGCGGCGGCGGCGGCGGCAGTAGCGGCCTGGGTGGGG
GCGGCCTGCACCCTGTCCTGTACCCCATCCTCCTCCTCCTGTCCCGCCTC
ACCCCGGAACTGCGAGTCGAGGGGGTCGGGGGTGGTGGCGGCGGCGCTGC
AGCAGCCAAGGCAACGCCTGCCGGGGTCGCAACGGCGGTCGCGTCGGGCC
CGGTGATCACGGACGACGGGCCTGGGCCCGGGCCCGCTGGCGGTGGGCCG
GGAGGCAGTGGCCCCGGGGGCAGCGGGCCTGGGGAGGCGTTTGTGCCGGC
AGTCCTCCGTTGTCGGGGCAGCTGCAATTTCTACGTGCGG
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