mRNA_S-ischiensis_contig11.2176.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI) HSP 1 Score: 233 bits (595), Expect = 1.300e-74 Identity = 117/198 (59.09%), Postives = 143/198 (72.22%), Query Frame = 1
Query: 1 EVAAVPAVEIPAAPAVLSGPEYLATLPGAAAPLGIFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYR-GGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQHFG 591
E+ P E P P L+GP+Y+ TL GA+AP FDPL ++ K A VKK+RE+EIKH RV+MLA LG+ VQE+AHPL+ GG+D+GPA H QAV FPL P LL++VG+FE NNIY+GW Q +K GVA LK +EPG+FGFDPLGL PKDEAG AM TKELNNGRLAMIA +GVW QE+ + +TI H
Sbjct: 41 EILQAPEAEEPPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA) HSP 1 Score: 181 bits (459), Expect = 2.990e-54 Identity = 91/173 (52.60%), Postives = 117/173 (67.63%), Query Frame = 1
Query: 82 GAAAPLGIFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGE-DLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEG--VAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQHFG 591
GA AP G FDP+G + D VKK+REAE+KHGRV+MLA LGL++QE HP + GE DLGPA+FH+Q V+ FPL ++L +G+ E+ I GW + ++ VA L + + PG+ FDPL L PKD AG M+TKELNNGRLAMIA LG+W QE+ + QTI HF
Sbjct: 48 GATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 220
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.390e-51 Identity = 88/182 (48.35%), Postives = 118/182 (64.84%), Query Frame = 1
Query: 67 LATLPGAAAPLGIFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYR-GGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEG------VAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQHFG 591
L + GA +P+ +DPLG A KVD ++K+REAE+KHGRV+MLA LG+IVQE HP + G D+GPA FH+Q ++F P +L+L VG+ E I GW Q KE VA LK+ + PG+ GFDPLGL P + ++ KELNNGRLAMIA+ G+W QE+ +H T+ +HF
Sbjct: 47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHFA 228
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA) HSP 1 Score: 174 bits (441), Expect = 3.820e-51 Identity = 92/187 (49.20%), Postives = 125/187 (66.84%), Query Frame = 1
Query: 67 LATLPGAAAPLGIFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIA-HPLY-RGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIK-----EG-VAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQH---FGF 594
L + GA AP+ +DPLG A +VD ++K+REAE+KHGRV+MLA LG+IVQE HP + G DLGPA FH+Q V ++P P+ LL+ VG E+ I GW Q K EG VA LK+ + PG+ GFDPLGL P+ E G +++ KE+NNGRLAMIA+ G+W QE+ + ++++H FGF
Sbjct: 48 LQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEHYQRFGF 234
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.440e-47 Identity = 79/163 (48.47%), Postives = 112/163 (68.71%), Query Frame = 1
Query: 103 IFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGW-KMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMA-MKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQH 585
+FDPLGLA KV +K+++E E+KHGRV+MLAVLG +V E+ HPL+ ++GP+ H Q +E++ P + + +GVFEA+NIY GW K I++G+A LKD + G+FGFDPL L P E M+ KELNNGRLAM A+LG+W QE+ + +F++
Sbjct: 47 VFDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMSFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFEN 209
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.560e-46 Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 1
Query: 67 LATLPGAAAPLGIFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLY-RGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEG------VAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQH---FGF 594
L + GA AP+ +DP GLA KVD ++K+REAE+KHGRV+MLA LG++VQE HP + G D+GPA FH+Q ++F P++L+ VG E I GW KE VA LK+ + PG+ GFDPLGL P ++ KELNNGRLAMIA+ G+W QE+ + + +H FGF
Sbjct: 45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEHYAKFGF 230
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.670e-45 Identity = 87/178 (48.88%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 52 SGPEYLATLPGAAAPLG---IFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTI 576
+G +Y+ATLPGA P G IFDPL L+ D +KKWREAEIKHGRV+MLA LG++V E HPL+ G + +GPA H Q + +P V LL + E N I ++ S G LK+ + PG+ GFDPL L P+DEA MKTKELNNGRLAMI + G+ +QE+ I
Sbjct: 43 AGSDYVATLPGA--PFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADI 218
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 157 bits (398), Expect = 5.310e-45 Identity = 87/182 (47.80%), Postives = 108/182 (59.34%), Query Frame = 1
Query: 52 SGPEYLATLPGAAAPLG-IFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQHFGF 594
+G +Y+ATLPGA G IFDPL L+ +KKWREAEIKHGRV+MLA LG++V E HPL+ G + +GPA H Q + FP LL + E N I + S G LK+ + PG+ GFDPL L P EA MKTKELNNGRLAMI + G+ QE+ Q I +F F
Sbjct: 43 AGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 155 bits (391), Expect = 5.520e-44 Identity = 85/178 (47.75%), Postives = 109/178 (61.24%), Query Frame = 1
Query: 52 SGPEYLATLPGAAAPLG---IFDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTI 576
+G +Y+ATLPGA P G IFDPL L+ + +K WREAEIKHGRV+MLA +G+IV E HPL+ G + +GPA H Q + FP LL + E N I + S G L+D + PG+ GFDPL L PKD+AG M+TKELNNGRLAMI + G+ +QE+ I
Sbjct: 44 AGSDYVATLPGA--PFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADI 219
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 154 bits (390), Expect = 1.040e-43 Identity = 83/188 (44.15%), Postives = 115/188 (61.17%), Query Frame = 1
Query: 40 PAVLSGPEYLATLPGAAAPLGI------FDPLGLAGKVDANSVKKWREAEIKHGRVSMLAVLGLIVQEIAHPLYRGGEDLGPATFHMQAVEQDFPLAPVSLLLLVGVFEANNIYMGWKMQSIKEGVAPLKDGFEPGNFGFDPLGLLPKDEAGAMAMKTKELNNGRLAMIAVLGVWLQEIAEHQTIFQH 585
P + +G +Y A+LPGA P G+ FDP GLA D ++KKWREAE+KHGRVSMLA +G++V E+ HPL+ G +GPA H Q + +PL V+ L ++ E I W S GV LK + PG+ GFDPLGL PKD ++++EL+ GR AMI VLG+ +QE+ + + I +H
Sbjct: 41 PKMTAGSDYAASLPGA--PFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEH 226 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2176.1 >prot_S-ischiensis_contig11.2176.1 ID=prot_S-ischiensis_contig11.2176.1|Name=mRNA_S-ischiensis_contig11.2176.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=199bp EVAAVPAVEIPAAPAVLSGPEYLATLPGAAAPLGIFDPLGLAGKVDANSVback to top mRNA from alignment at S-ischiensis_contig11:1819026..1820130- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2176.1 ID=mRNA_S-ischiensis_contig11.2176.1|Name=mRNA_S-ischiensis_contig11.2176.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1105bp|location=Sequence derived from alignment at S-ischiensis_contig11:1819026..1820130- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:1819026..1820130- >mRNA_S-ischiensis_contig11.2176.1 ID=mRNA_S-ischiensis_contig11.2176.1|Name=mRNA_S-ischiensis_contig11.2176.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1194bp|location=Sequence derived from alignment at S-ischiensis_contig11:1819026..1820130- (Schizocladia ischiensis KU_0333)back to top |