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Homology
BLAST of mRNA_S-ischiensis_contig11.2040.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI) HSP 1 Score: 195 bits (496), Expect = 7.000e-50 Identity = 119/289 (41.18%), Postives = 164/289 (56.75%), Query Frame = 2
Query: 71 WSCPICGTKVGDAVCGSCVSVEAGRRRKELQERQGVLREIRARALSTSQCHKDALHQEAALEREAANASRLKEEILGVTELVRRDRINLASSSFTLQQRQALQAEVEAKLAAEGRAAKHVFEAVLWGLKRHMEEVRRALRRRCWEKVSQLFVVLPIHASVPG---WSEGGER--GGGPRGE------------------------------------VGGISTVAYLPLPNNGDYRHVPAEVLMSALVLVARVTVAAADYLGVSLPHPIYPASSTTYATVAVDQSQRKR 814
W C +C K GD VCG+CV+ EA RRR E +R G L +R A +Q A+ +A L++E A+ RLK+ + V + V +RI +AS++F L+ + L A E+ L+ E +A + EA+L GL+RH E+ R LR+R W KV QLFV+LP+ S+P W G++ GGG V G+ST+ LPLPNNGDY VPA+VLM++L LVAR+ A A LGVSLPHP++PA+ST YAT++VD S R+R
Sbjct: 8 WKCGVCNAKAGDLVCGACVTREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMPPRREWPLRGKKNLGGGDHSPGTAPSTAESEEGREVTRLPXXXXXXXXXXXXXXXEVVSGVSTLVDLPLPNNGDYSQVPADVLMASLALVARLVAAVASCLGVSLPHPLFPAASTRYATISVDSSPRER 296
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 201.4 |
| Seed ortholog evalue | 6.2e-49 |
| Seed eggNOG ortholog | 2880.D8LT64 |
| EggNOG OGs | 2E6RT@1,2SDEH@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | UV radiation resistance protein/autophagy-related protein 14 |
| Ec32 ortholog | Ec-12_005410.1 |
| Exons | 5 |
| Model size | 2939 |
| Cds size | 960 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.4097092-UTR-S-ischiensis_contig11:610976..612903 | 1622815591.4097092-UTR-S-ischiensis_contig11:610976..612903 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 610977..612903 - |
| 1695739789.747644-UTR-S-ischiensis_contig11:610976..612903 | 1695739789.747644-UTR-S-ischiensis_contig11:610976..612903 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 610977..612903 - |
| 1622815591.47373-UTR-S-ischiensis_contig11:615699..615751 | 1622815591.47373-UTR-S-ischiensis_contig11:615699..615751 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 615700..615751 - |
| 1695739789.8155828-UTR-S-ischiensis_contig11:615699..615751 | 1695739789.8155828-UTR-S-ischiensis_contig11:615699..615751 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 615700..615751 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.422594-CDS-S-ischiensis_contig11:612903..613102 | 1622815591.422594-CDS-S-ischiensis_contig11:612903..613102 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 612904..613102 - |
| 1695739789.756863-CDS-S-ischiensis_contig11:612903..613102 | 1695739789.756863-CDS-S-ischiensis_contig11:612903..613102 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 612904..613102 - |
| 1622815591.4340672-CDS-S-ischiensis_contig11:614000..614157 | 1622815591.4340672-CDS-S-ischiensis_contig11:614000..614157 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 614001..614157 - |
| 1695739789.7645497-CDS-S-ischiensis_contig11:614000..614157 | 1695739789.7645497-CDS-S-ischiensis_contig11:614000..614157 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 614001..614157 - |
| 1622815591.4437852-CDS-S-ischiensis_contig11:614820..615153 | 1622815591.4437852-CDS-S-ischiensis_contig11:614820..615153 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 614821..615153 - |
| 1695739789.7731395-CDS-S-ischiensis_contig11:614820..615153 | 1695739789.7731395-CDS-S-ischiensis_contig11:614820..615153 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 614821..615153 - |
| 1622815591.4538944-CDS-S-ischiensis_contig11:615311..615417 | 1622815591.4538944-CDS-S-ischiensis_contig11:615311..615417 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 615312..615417 - |
| 1695739789.7914815-CDS-S-ischiensis_contig11:615311..615417 | 1695739789.7914815-CDS-S-ischiensis_contig11:615311..615417 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 615312..615417 - |
| 1622815591.4649746-CDS-S-ischiensis_contig11:615534..615699 | 1622815591.4649746-CDS-S-ischiensis_contig11:615534..615699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 615535..615699 - |
| 1695739789.804343-CDS-S-ischiensis_contig11:615534..615699 | 1695739789.804343-CDS-S-ischiensis_contig11:615534..615699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 615535..615699 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2040.1 >prot_S-ischiensis_contig11.2040.1 ID=prot_S-ischiensis_contig11.2040.1|Name=mRNA_S-ischiensis_contig11.2040.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=320bp
MKENKRWSCPICGTKVGDAVCGSCVSVEAGRRRKELQERQGVLREIRARA
LSTSQCHKDALHQEAALEREAANASRLKEEILGVTELVRRDRINLASSSF
TLQQRQALQAEVEAKLAAEGRAAKHVFEAVLWGLKRHMEEVRRALRRRCW
EKVSQLFVVLPIHASVPGWSEGGERGGGPRGEVGGISTVAYLPLPNNGDY
RHVPAEVLMSALVLVARVTVAAADYLGVSLPHPIYPASSTTYATVAVDQS
QRKRWRRRACSGGWSPCATPWGLSTRPWTCWAGAVIHIHCNEVRVQSHVC
EIDCSRITLLAGKYSKSAS* back to topmRNA from alignment at S-ischiensis_contig11:610977..615751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2040.1 ID=mRNA_S-ischiensis_contig11.2040.1|Name=mRNA_S-ischiensis_contig11.2040.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4775bp|location=Sequence derived from alignment at S-ischiensis_contig11:610977..615751- (Schizocladia ischiensis KU_0333)
AGCAGACCACGGGCCGACAGCTCGCAGTTGGGGTGTGTGTGACGGTCACC
CGATGAAGGAAAATAAGCGTTGGAGCTGTCCCATCTGTGGCACGAAGGTC
GGGGATGCGGTCTGCGGATCGTGCGTGTCTGTGGAGGCCGGGAGGCGCAG
AAAAGAGCTCCAGGAGCGGCAGGGCGTTCTACGGGAGATCCGGGCACGCG
CGCTGTCTACGTCGCAGGTACGCCTCTCGTCGACCATGGTGGATGAAGTT
ATGCCACTGTATTGCCGAGACCCCCAGGCTGGAGCCTGAGGATGGCCCTA
TCGCTGGCCTCTGCTCCACCTCGTGTCTGCACAGTGCCACAAAGACGCAC
TGCATCAAGAGGCGGCCCTGGAAAGGGAGGCGGCCAATGCTTCGCGTTTG
AAGGAGGAGATCCTTGGTGTCACGGAGCTCGTCCGACGAGGTGAGTTGGT
GGGCCGGCTGTGCTGGTGGCCGTCTCTTCCGCTTAACCGGCCTTGCTGGC
AACCGCCCCCGCCCTCTCTCCCCACCCCCTCCTCCCCCGCCGGACCCCCT
CCCATAAACAAAGCAATCCAACGGAGCCGCAACTTCCACACCCCCCAGAC
AGAATCAACCTGGCGAGCTCTTCTTTCACCCTGCAGCAGCGCCAGGCCCT
GCAGGCCGAGGTGGAGGCCAAGCTAGCCGCGGAGGGCAGGGCCGCCAAAC
ACGTTTTCGAGGCCGTCCTTTGGGGCCTGAAGCGACACATGGAGGAGGTT
CGGCGCGCGCTCCGCCGCCGCTGCTGGGAGAAGGTCTCGCAGCTGTTTGT
GGTGCTTCCCATCCACGCCTCCGTCCCCGGGTGGAGCGAGGGGGGCGAGC
GCGGCGGCGGCCCCCGCGGGGAGGTCGGAGGCATCAGCACCGTGGCGTAC
CTCCCCCTGCCCAACAACGGCGACTACCGCCGTGAGTGCTTTTTCTTTCC
CGTCTCGGCTGAGGAAGGAAGAACGCGTGCGGGCGTGCACTCACTGTGAT
GATTTGTGTGACGACAGGTGCTAGTGATAACGCTACTTTCTGTGCTCAAG
TGATACTTTGAAGTACATGCATACCCGGAATCACCGCGAATTGCCAGAGT
GACCCCCAGGTGGGGGTCGTGCTTCGTTCGTGGCAGGTGCCGCGCCCCCC
CCCGGTGTCAGGAGGATACTGTAGTGCGCCTACAATACACGTCCACCCAA
GCTTGGGGTGCGCTTCCGTCCGTCATGGGCCCCCTGCACCCCCGTCCCCG
CAATCCCTCTGCTCGTCAAAGCCCCCCTCAATTGGTTTTGTCTCAATGGC
ACAACAAGTGATACTGCACAGTACCCTCTCGTACAGTGTAGGGCTCTTCT
GAGGTCAGAGATACTCACTATGAGGGCACCCTTCCCCGGGGTGTAAAGTG
ATACTGCACAGTACTCCAACAGTGTAGGGCTCTTCTGTACGTCAGAGTTA
CTCACTATGAGGGCACGCACTGTTCCCCGGGGTGTAAAACGGCTACCTAA
CCCTGCCTCTGCCCCGTTTTGCTGCGCCCCCTACTTGCACACCCCTCCTC
GCGCGCGTGGGGTCGCTCGCGCGTCTCTCCGCTCCTGTCTGCAGACGTGC
CGGCAGAGGTGCTCATGTCGGCCCTGGTGCTTGTCGCCCGTGTGACGGTG
GCGGCGGCGGACTACCTGGGCGTGTCGCTGCCCCACCCCATCTACCCGGC
CTCCAGCACGACGTACGCCACCGTCGCCGTCGACCAGTCCCAGCGGAAAA
GGTCAGACAGAGCTCTCTCGCGCGTCGCCCGGCGCCTGTTTTTACTTGTA
GCAAACGCAGCCGTCGACCAGCCCCAGCGGCAAGGTCAGAGCTCTCTCAC
GTGTACTTGTGTAGTGTGCAGCTCACATGTCGCCCGGCGCCTGTTTTTGC
TCCACCATCGCCGTGGACCAGTCCCAGCGGAAAAGATCGCTCGCCCGGCG
CCTGTTTTTACTTGTACAGTAGGCAAGCGCGGCCGTCGGCGTACTTGCAG
GTGCTCGAGTGCTGCGGTTGACACGCCAGCTGCAGTGAGCGTGCACACGC
GGGTAAGCTATCTGCAGGCAGGTGGCCAAAGGTACCGAAAACCGTAACAA
GTACTCTGAAGTACCTACTTTGAGAAGCATCCTGCTGCTATGTAGTACAG
TGTTGAAGTTGAAGTTACTTCGAAGTACTTAGTTGAGGAGGGCCATTTGT
GCGCCCCCCCCCCCCCGTCTCGTGCCACCAAGCAACAGACGGGGCACGAG
GCATGAACGTAGACAGGGGGGGGGGGGGTTTCAACGAGCCGCCCGTGTGG
GTCCCTTGTCCCGGCACCGGGGCCTGCCTCACGCTGGCTCGGCTGAGCTG
GCGTCGAACCTTTCGCGCCCTCATCGTGCACACACCAGCCCCCTCCCGCC
CATGCCACGCCGACCGAGATCAGCACGCCTCAGCCGCCCGCGCGCACTGC
CCCAGCCAATTCCCATCGCTCACCTCAGAGAGTAAACTCGAGTTTGTCTA
TCACCTGGCCCCGGGCCCGGTCCCCCGGCCGCCTAACCTACCAGCCTGCC
CGGCCTTTTCCTGCCTATTGTATCCCCCCCCAATCCCTGCCCGGGGTATA
TATATATATATGCAGGGCGAACCAATACCCGCTGTGCCCCCTCTCCAAGG
TGGCGGAGACGGGCGTGCTCGGGGGGTTGGAGTCCGTGTGCAACACCGTG
GGGGCTTTCGACACGGCCTTGGACCTGCTGGGCAGGTGCGGTGATTCATA
TACATTGTAACGAGGTACGAGTACAATCGCACGTGTGTGAGATTGACTGT
TCTCGTATTACTCTTCTGGCCGGAAAGTATTCAAAAAGTGCTTCATAACT
TTTGAAGGAGGGCTCGGATGATTAAACGGCTTGTTGATTTGGAATCCTTG
GCAATGTTTACATCAAATGGCCAAGTTTCATGCCCCAAGTCCCACAGGCA
ATATCTGTGGGGCCTTGAATTTGTGGACATGCTCCCGCTACGGCCATTTG
GTGATACATCTAGCCGGCAACTGCCTCTGCTTTCACCTCAGCTCCTCGGC
TGACAAATTGCGCCCGTGGCAAACTAACACTTGATTGCACACCTCACACT
GGCCCCTCCCAACCTTGCAAAGTGTGATGGTACATTTTCTTTAGCCATGG
TCAAAATTCTACATTTCAAGCGCCGAAATTGACGTGCTCCGCGCCCCCCA
AATTGGGGTCTGAAAGGACTCAAAAGGCCACAACTTTCCTAAAAGAGGTC
CGATACGCGCGAAACTTGAGATACAAGTCCCTCACTAGGCCAGACATTGT
TTCGCCAAGTTTCAGGAATTGTGGGTTGTCCTGGACTGTGCAAGGGGCCG
TGCCGCCCCACTGAACTGTGAACAAGTCATTCAGCCAAAACATCTTGTTC
AGGATTTCGGGAAAATGAGTGATCCCCACCCACTTTTTGCATCATGCACG
GCCAATGGTATCCTAAACCATTTCCATAGACCTGTTTTCGTGCCATGGGC
TGTATCTGTCGGCGACTGTGACGTCATAAACCTCCATCGGGCCCGGGTTT
TTGCCTACTTCGGCGGGTTTTGCCACAGAAACCACAATTGGTGTCGAGAC
GCAGTGCAACGCCGCCCAGACCTCCACTACGAGGTCGGCTACACAGCGCG
AGCCGAAGTCTATGCTCGTGTGCCGCTGGTCGCGAGTTCTGGGCCGAAAC
ATGGCGTCACCCAAATGCCCCCTCCAGGAGGCCCGCGCAGCCAATCGCCA
TTTTCTTGGCCCCGAGGTGGATTTTGGGCGCGAAACTTTGGGAGCGTGTG
CTACGTGCCCTAAAGAACAGTGTACATTCCTTGTTTGCGGTCGATGGTGC
TCGGCGGGCTCGGCATCGCTGTGCAACACCTCCTCTGACCCCTCCAAAAT
CCCGCAAAAATGCCCATTTTCGGCGGCTCTGTTCGCCGCGGGAACAAAAA
ATCGAGAAAAAAGAACATCGGCATTGAGTTCACCTCCCGATGAGTCGATT
TCATTATAGTGGCTCGGCCCCGTTCGTTCGCCGCGAGCTGTCGAAACACT
TTTCGAATACTTTCCGGCCAGAGGAGTAGTACAGTAGTTGTCCCATTTAA
GAATTGAGTGTTCTCATATTAGTGCGGAAACGGTCTGGTCCGCTACTTGT
ATGGCCAGTTTAGGGACCCGGGCGAGGTTCCTCACGATGAGGACGACTCC
AGGGGGGGCAATGAAAAATCGCCCTAACAGTTTGCGGCCTGGTGGCGGTC
AACATACTGTACGAGTACGAGTACAAGTAGTGGGGGCCGTGGAACAAATG
GATTGTGATTGCAGATGCACAGTGCTTGTATGTAGTATTTGTCCATTTTG
GCCTCCGGGGGACGCACACACGCACGGGCGCATTATTCTCGTGCACCCCC
CCAAAAATCAATCGCGTTAGACCTCCAATTGGCCGTGAAGTTGGGTCCGG
CCTGTGGAAAGACAACCCACTCGCAGCCACCTCTAAGTAGCAAGGCCCAA
CTGGGCCTGGGGGTGGGGGGCACCCAGCCAGCCAACGAGCCACAGCCAAG
GCGTAAGTAGCCCCGCCCCGCCACACAGCTCGGGGCTAACTACCACTGTT
TCATGGTACTGAAGGGGCAGCCTCCGCCGCCCGGGGCTGTGCACGCCTTG
GCCTGCACCGTTCGGCAGGCATTGTCGGCGTGGCCGACCTCTGGATGCCT
GACACGACAGCAACCCATTGTTGCCTCGGCCACGGCCCGCTTGCTCACTG
GCCATTGCCTACTGTACTTATCGTT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:610977..615751- >mRNA_S-ischiensis_contig11.2040.1 ID=mRNA_S-ischiensis_contig11.2040.1|Name=mRNA_S-ischiensis_contig11.2040.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1920bp|location=Sequence derived from alignment at S-ischiensis_contig11:610977..615751- (Schizocladia ischiensis KU_0333)
ATGAAGGAAAATAAGCGTTGGAGCTGTCCCATCTGTGGCACGAAGGTCGG
GGATGCGGTCTGCGGATCGTGCGTGTCTGTGGAGGCCGGGAGGCGCAGAA
AAGAGCTCCAGGAGCGGCAGGGCGTTCTACGGGAGATCCGGGCACGCGCG
CTGTCTACGTCGCAGATGAAGGAAAATAAGCGTTGGAGCTGTCCCATCTG
TGGCACGAAGGTCGGGGATGCGGTCTGCGGATCGTGCGTGTCTGTGGAGG
CCGGGAGGCGCAGAAAAGAGCTCCAGGAGCGGCAGGGCGTTCTACGGGAG
ATCCGGGCACGCGCGCTGTCTACGTCGCAGTGCCACAAAGACGCACTGCA
TCAAGAGGCGGCCCTGGAAAGGGAGGCGGCCAATGCTTCGCGTTTGAAGG
AGGAGATCCTTGGTGTCACGGAGCTCGTCCGACGAGTGCCACAAAGACGC
ACTGCATCAAGAGGCGGCCCTGGAAAGGGAGGCGGCCAATGCTTCGCGTT
TGAAGGAGGAGATCCTTGGTGTCACGGAGCTCGTCCGACGAGACAGAATC
AACCTGGCGAGCTCTTCTTTCACCCTGCAGCAGCGCCAGGCCCTGCAGGC
CGAGGTGGAGGCCAAGCTAGCCGCGGAGGGCAGGGCCGCCAAACACGTTT
TCGAGGCCGTCCTTTGGGGCCTGAAGCGACACATGGAGGAGGTTCGGCGC
GCGCTCCGCCGCCGCTGCTGGGAGAAGGTCTCGCAGCTGTTTGTGGTGCT
TCCCATCCACGCCTCCGTCCCCGGGTGGAGCGAGGGGGGCGAGCGCGGCG
GCGGCCCCCGCGGGGAGGTCGGAGGCATCAGCACCGTGGCGTACCTCCCC
CTGCCCAACAACGGCGACTACCGCCACAGAATCAACCTGGCGAGCTCTTC
TTTCACCCTGCAGCAGCGCCAGGCCCTGCAGGCCGAGGTGGAGGCCAAGC
TAGCCGCGGAGGGCAGGGCCGCCAAACACGTTTTCGAGGCCGTCCTTTGG
GGCCTGAAGCGACACATGGAGGAGGTTCGGCGCGCGCTCCGCCGCCGCTG
CTGGGAGAAGGTCTCGCAGCTGTTTGTGGTGCTTCCCATCCACGCCTCCG
TCCCCGGGTGGAGCGAGGGGGGCGAGCGCGGCGGCGGCCCCCGCGGGGAG
GTCGGAGGCATCAGCACCGTGGCGTACCTCCCCCTGCCCAACAACGGCGA
CTACCGCCACGTGCCGGCAGAGGTGCTCATGTCGGCCCTGGTGCTTGTCG
CCCGTGTGACGGTGGCGGCGGCGGACTACCTGGGCGTGTCGCTGCCCCAC
CCCATCTACCCGGCCTCCAGCACGACGTACGCCACCGTCGCCGTCGACCA
GTCCCAGCGGAAAAGACGTGCCGGCAGAGGTGCTCATGTCGGCCCTGGTG
CTTGTCGCCCGTGTGACGGTGGCGGCGGCGGACTACCTGGGCGTGTCGCT
GCCCCACCCCATCTACCCGGCCTCCAGCACGACGTACGCCACCGTCGCCG
TCGACCAGTCCCAGCGGAAAAGGTGGCGGAGACGGGCGTGCTCGGGGGGT
TGGAGTCCGTGTGCAACACCGTGGGGGCTTTCGACACGGCCTTGGACCTG
CTGGGCAGGTGCGGTGATTCATATACATTGTAACGAGGTACGAGTACAAT
CGCACGTGTGTGAGATTGACTGTTCTCGTATTACTCTTCTGGCCGGAAAG
TATTCAAAAAGTGCTTCATAAGTGGCGGAGACGGGCGTGCTCGGGGGGTT
GGAGTCCGTGTGCAACACCGTGGGGGCTTTCGACACGGCCTTGGACCTGC
TGGGCAGGTGCGGTGATTCATATACATTGTAACGAGGTACGAGTACAATC
GCACGTGTGTGAGATTGACTGTTCTCGTATTACTCTTCTGGCCGGAAAGT
ATTCAAAAAGTGCTTCATAA back to top
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