mRNA_S-ischiensis_contig9.20703.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20703.1
Unique NamemRNA_S-ischiensis_contig9.20703.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20703.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.880e-43
Identity = 90/183 (49.18%), Postives = 110/183 (60.11%), Query Frame = 1 
Query:    4 EKALRAGLDRLVMDTSRSEAVRRCAAVLRELCRHEKAALFVHAVDRLEMPEYYRIISHPVTIKSLLTGLEASVYEAEVGGAAASALEGERSEVENSGGGVGGSGGGLAADPVAGFAANVRRMWENCWCFNHEGSEAWAAAARLSQVFERLLREWVLRASPPPPDLAELVRQDARPCSACGEFD 552
            E  LR  L  L  D  + EAVRRCA VLRE+ RH    +F+  +DR++ PEYY +I  P+T+ SLL  LE         G  A A EG RS+ E              A  V  F  +VRRMWENCW +NHEG++AW AA RLS VFERLLREW+LRA+P PP L +L+  + RPCSACG  D
Sbjct: 1308 ETVLRRRLHGLAEDEGKPEAVRRCAVVLREIARHRLGGVFLFPMDRMQSPEYYAVIEEPITVLSLLDFLEGWSC-----GGTAEASEGGRSKAE------------AEAGLVDEFTISVRRMWENCWSYNHEGTKAWVAAVRLSSVFERLLREWILRATPAPPGLPQLLGGETRPCSACGAVD 1473
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BLAST of mRNA_S-ischiensis_contig9.20703.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.830e-42
Identity = 89/183 (48.63%), Postives = 109/183 (59.56%), Query Frame = 1 
Query:    4 EKALRAGLDRLVMDTSRSEAVRRCAAVLRELCRHEKAALFVHAVDRLEMPEYYRIISHPVTIKSLLTGLEASVYEAEVGGAAASALEGERSEVENSGGGVGGSGGGLAADPVAGFAANVRRMWENCWCFNHEGSEAWAAAARLSQVFERLLREWVLRASPPPPDLAELVRQDARPCSACGEFD 552
            E  LR  L  L  D  + EAVRRCA VLRE+ RH    +F+  +DR++ PEYY +I  P+T+ SLL  LE         G  A A EG  S  E              A  V  F  +VRRMWENCW +NHEG++AW AA RLS VFERLLREW+LRA+P PP L +L+  +ARPCSACG  +
Sbjct:  904 EAVLRRRLHGLAEDEGKPEAVRRCAVVLREIARHRLGGVFLFPMDRMQSPEYYAVIEEPITVLSLLDFLEGWSC-----GGTAEASEGGESTAE------------AEAGLVDEFTISVRRMWENCWSYNHEGTKAWLAAVRLSSVFERLLREWILRATPAPPGLPQLLGSEARPCSACGAVE 1069
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BLAST of mRNA_S-ischiensis_contig9.20703.1 vs. uniprot
Match: A0A7S3QEU5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEU5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.020e-5
Identity = 39/149 (26.17%), Postives = 66/149 (44.30%), Query Frame = 1 
Query:   28 DRLVMDTSRS-EAVRRCAAVLRELCRHEKAALFVHAVDRLEMPEYYRIISHPVTIKSLLTGLEASVYEAEVGGAAASALEGERSEVENSGGGVGGSGGGLAADPVAGFAANVRRMWENCWCFNHEGSEAWAAAARLSQVFERLLREWVL 471
            D    D  R+ E +RRC AVLR LC    A  F++ VD     +YY  +  P+++  +   L+ ++ E           +G+  ++                  VA FA  +R + +N  CF+  G    + A  + ++FERL  +W+L
Sbjct: 1121 DEFCADAPRAPELLRRCLAVLRNLCMSSPADTFLYPVDPQANLKYYESVLRPMSLYDVGRSLQNTIQE----------YQGKWKDI-------------CVESVVAEFARKIRIIGKNPICFSPVGGPLISTAEEMLRIFERLFFDWIL 1246
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE2.880e-4349.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI13_ECTSI1.830e-4248.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3QEU5_9STRA4.020e-526.17Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2715045..2716705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue6.8e-38
Seed eggNOG ortholog2880.D8LI13
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0825@1,KOG0825@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size601
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20703.1prot_S-ischiensis_contig9.20703.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2715045..2716703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.5977132-CDS-S-ischiensis_contig9:2715044..27150971622817396.5977132-CDS-S-ischiensis_contig9:2715044..2715097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715045..2715097 +
1695741083.134233-CDS-S-ischiensis_contig9:2715044..27150971695741083.134233-CDS-S-ischiensis_contig9:2715044..2715097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715045..2715097 +
1622817396.609862-CDS-S-ischiensis_contig9:2715301..27153951622817396.609862-CDS-S-ischiensis_contig9:2715301..2715395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715302..2715395 +
1695741083.145408-CDS-S-ischiensis_contig9:2715301..27153951695741083.145408-CDS-S-ischiensis_contig9:2715301..2715395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715302..2715395 +
1622817396.6216035-CDS-S-ischiensis_contig9:2715772..27160631622817396.6216035-CDS-S-ischiensis_contig9:2715772..2716063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715773..2716063 +
1695741083.1548567-CDS-S-ischiensis_contig9:2715772..27160631695741083.1548567-CDS-S-ischiensis_contig9:2715772..2716063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2715773..2716063 +
1622817396.6340373-CDS-S-ischiensis_contig9:2716544..27167031622817396.6340373-CDS-S-ischiensis_contig9:2716544..2716703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2716545..2716703 +
1695741083.1639967-CDS-S-ischiensis_contig9:2716544..27167031695741083.1639967-CDS-S-ischiensis_contig9:2716544..2716703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2716545..2716703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20703.1

>prot_S-ischiensis_contig9.20703.1 ID=prot_S-ischiensis_contig9.20703.1|Name=mRNA_S-ischiensis_contig9.20703.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=199bp
SEKALRAGLDRLVMDTSRSEAVRRCAAVLRELCRHEKAALFVHAVDRLEM
PEYYRIISHPVTIKSLLTGLEASVYEAEVGGAAASALEGERSEVENSGGG
VGGSGGGLAADPVAGFAANVRRMWENCWCFNHEGSEAWAAAARLSQVFER
LLREWVLRASPPPPDLAELVRQDARPCSACGEFDRGVVASVVSGGGAGG
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mRNA from alignment at S-ischiensis_contig9:2715045..2716705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20703.1 ID=mRNA_S-ischiensis_contig9.20703.1|Name=mRNA_S-ischiensis_contig9.20703.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1661bp|location=Sequence derived from alignment at S-ischiensis_contig9:2715045..2716705+ (Schizocladia ischiensis KU_0333)
TCAGAGAAGGCCTTGCGGGCAGGGCTGGACCGTCTCGTCATGGACACCTC
CAGGTCGGCAGTGATGGAATATTTAAGCAAACCAACGTATTTATCGACGT
ACTGATAAATCTATCTATCGATAGTCGATGTTCGATAGTTTGGCCCACAC
TGAATCCGAATACTTCCGGAAGTAGTTAGTAGCGCCACCCACTAAGTCAG
TCGAGCCCGATATCTATCTCCTGTAGAGCTCTACTGATCGATATTCCATC
ACTGCAGGTCGGAGGCGGTGCGGCGGTGCGCGGCGGTGCTGCGGGAGCTG
TGCCGCCACGAGAAGGCGGCACTGTTTGTGCACGCCGTGGACAGGCTCGA
GGTGGGTGCGAACAGTAGTGATGGGATATCGATTGACGGATCGCTAAGTT
AGATAGGTGTCAGCCTGCTCGGTCGATGTGTTTTGTCCGTGGTACCAACT
ACGAGTACATACGTTTGCATGATTTATTAGCCTGTCCTTAGGATGGCGAG
AGCCAGGCATGGCCCGTTCGCCCGGGTGCCGCTCGCACGTGTAACTGTCA
ACCTGCTTGTACGTACTCGAGTAAACGCCTCCGTCTGCCTCACACCTATC
CCCCACAATTGCCCCCCCCCCCCCCCGCCCCGCCGCCTCCTCTCCGCGAA
CCACCTCCCCCTCCCTCCTCCCCCCGCCCCCCCACTACCGCCGCCGCCAC
CCACCGGTGCGTGGACCGCGCCGCCCAGATGCCCGAGTATTATCGCATCA
TCTCCCACCCCGTCACCATCAAATCTCTCCTCACGGGCCTCGAGGCCAGC
GTCTATGAGGCCGAGGTCGGGGGGGCGGCGGCGTCCGCATTAGAGGGGGA
GAGGTCGGAGGTTGAAAACTCTGGGGGAGGCGTTGGTGGCAGTGGCGGTG
GTCTGGCGGCGGACCCGGTGGCTGGGTTTGCTGCCAATGTCCGCCGCATG
TGGGAGAACTGCTGGTGCTTCAACCACGAGGGCAGCGAGGCGTGGGCGGC
CGCCGCGCGCCTGTCGCAGGTGAGCGCCGCGGACAGACACGCAGGCAGAA
CGAGCGGGTACGGATGCGTACTCCGTAGTACCATGTAATGTACAGTACTG
TTCATTCGGTAGTGCACGGTATGTCTCGATCGAGGCACGTGGTCAATGGT
CTCGGGACTACGGCTGCATAGCGCGAGTGCATACTCTATACTTCAAAGTA
TATACTTGTAGCCACCCCAGGCTGAGTTTCTTTCCTTTTTTTGTGGGCTG
CGGTGGCGGACCCTCTCTTGTTCCTTGCCCCACTATGGTGGATCGCGTGG
AGATTGTCTTTCGAGGACGTGACAATTGGGGCGATTGCTTTGCCCGTTTC
AGTGTTTGACATGTACTTCCGGAAGTACTTTACGTGGGCATTGTCCGGCG
ACCTACTCGCACCCGTCAGGAGCTCAATTCTCGCGCGAAGGCCGTCGACC
ATGCCCACGCAAACCACCCGACAACACGACGCGTGCCCCCGCCCCCCCAG
GTGTTTGAGCGGCTGCTCCGCGAGTGGGTCCTCCGCGCCTCCCCGCCGCC
CCCCGACCTGGCGGAGCTCGTGCGCCAGGACGCCCGCCCCTGCTCCGCCT
GCGGGGAGTTCGACCGGGGGGTGGTGGCGTCTGTGGTTTCTGGCGGTGGT
GCAGGAGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2715045..2716705+

>mRNA_S-ischiensis_contig9.20703.1 ID=mRNA_S-ischiensis_contig9.20703.1|Name=mRNA_S-ischiensis_contig9.20703.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1194bp|location=Sequence derived from alignment at S-ischiensis_contig9:2715045..2716705+ (Schizocladia ischiensis KU_0333)
TCAGAGAAGGCCTTGCGGGCAGGGCTGGACCGTCTCGTCATGGACACCTC
CAGTCAGAGAAGGCCTTGCGGGCAGGGCTGGACCGTCTCGTCATGGACAC
CTCCAGGTCGGAGGCGGTGCGGCGGTGCGCGGCGGTGCTGCGGGAGCTGT
GCCGCCACGAGAAGGCGGCACTGTTTGTGCACGCCGTGGACAGGCTCGAG
GTCGGAGGCGGTGCGGCGGTGCGCGGCGGTGCTGCGGGAGCTGTGCCGCC
ACGAGAAGGCGGCACTGTTTGTGCACGCCGTGGACAGGCTCGAGATGCCC
GAGTATTATCGCATCATCTCCCACCCCGTCACCATCAAATCTCTCCTCAC
GGGCCTCGAGGCCAGCGTCTATGAGGCCGAGGTCGGGGGGGCGGCGGCGT
CCGCATTAGAGGGGGAGAGGTCGGAGGTTGAAAACTCTGGGGGAGGCGTT
GGTGGCAGTGGCGGTGGTCTGGCGGCGGACCCGGTGGCTGGGTTTGCTGC
CAATGTCCGCCGCATGTGGGAGAACTGCTGGTGCTTCAACCACGAGGGCA
GCGAGGCGTGGGCGGCCGCCGCGCGCCTGTCGCAGATGCCCGAGTATTAT
CGCATCATCTCCCACCCCGTCACCATCAAATCTCTCCTCACGGGCCTCGA
GGCCAGCGTCTATGAGGCCGAGGTCGGGGGGGCGGCGGCGTCCGCATTAG
AGGGGGAGAGGTCGGAGGTTGAAAACTCTGGGGGAGGCGTTGGTGGCAGT
GGCGGTGGTCTGGCGGCGGACCCGGTGGCTGGGTTTGCTGCCAATGTCCG
CCGCATGTGGGAGAACTGCTGGTGCTTCAACCACGAGGGCAGCGAGGCGT
GGGCGGCCGCCGCGCGCCTGTCGCAGGTGTTTGAGCGGCTGCTCCGCGAG
TGGGTCCTCCGCGCCTCCCCGCCGCCCCCCGACCTGGCGGAGCTCGTGCG
CCAGGACGCCCGCCCCTGCTCCGCCTGCGGGGAGTTCGACCGGGGGGTGG
TGGCGTCTGTGGTTTCTGGCGGTGGTGCAGGAGGGGTGTTTGAGCGGCTG
CTCCGCGAGTGGGTCCTCCGCGCCTCCCCGCCGCCCCCCGACCTGGCGGA
GCTCGTGCGCCAGGACGCCCGCCCCTGCTCCGCCTGCGGGGAGTTCGACC
GGGGGGTGGTGGCGTCTGTGGTTTCTGGCGGTGGTGCAGGAGGG
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