mRNA_S-ischiensis_contig9.20614.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20614.1
Unique NamemRNA_S-ischiensis_contig9.20614.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20614.1 vs. uniprot
Match: D7FMW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMW4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.000e-13
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  243 LTVIAEATELPPFGFHVYWLQERLKERLGFPVSHRAINECLSAYYNLREWQERFFENELPEDAEPF 440
            + V+ EATELPPFGF++  L++RLK RLG  ++  AIN CLS YYNLREW++R+    L  + + F
Sbjct:    1 MAVLDEATELPPFGFNIAVLEQRLKHRLGLEIAQSAINACLSPYYNLREWEDRYVVTSLGSEVQEF 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW4_ECTSI2.000e-1351.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1964451..1965401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002730.1
Exons1
Model size951
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20614.1prot_S-ischiensis_contig9.20614.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1964534..1965076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.2648342-UTR-S-ischiensis_contig9:1964450..19645331622817372.2648342-UTR-S-ischiensis_contig9:1964450..1964533Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1964451..1964533 +
1695741063.746426-UTR-S-ischiensis_contig9:1964450..19645331695741063.746426-UTR-S-ischiensis_contig9:1964450..1964533Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1964451..1964533 +
1622817372.2873604-UTR-S-ischiensis_contig9:1965076..19654011622817372.2873604-UTR-S-ischiensis_contig9:1965076..1965401Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1965077..1965401 +
1695741063.7708027-UTR-S-ischiensis_contig9:1965076..19654011695741063.7708027-UTR-S-ischiensis_contig9:1965076..1965401Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1965077..1965401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.2763426-CDS-S-ischiensis_contig9:1964533..19650761622817372.2763426-CDS-S-ischiensis_contig9:1964533..1965076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1964534..1965076 +
1695741063.7577446-CDS-S-ischiensis_contig9:1964533..19650761695741063.7577446-CDS-S-ischiensis_contig9:1964533..1965076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1964534..1965076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20614.1

>prot_S-ischiensis_contig9.20614.1 ID=prot_S-ischiensis_contig9.20614.1|Name=mRNA_S-ischiensis_contig9.20614.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
MPGEGSRASSTAAQAPRSRQSGSRRTKAAGPAAKKKGQGGMVGRASDLSL
EHKLTVIAEATELPPFGFHVYWLQERLKERLGFPVSHRAINECLSAYYNL
REWQERFFENELPEDAEPFSIPDSLLQDVNLSQDSGDEDRRPAFGPQGNG
SAGSAPSSEATGKAQSHGSAEGRASPRDHS*
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mRNA from alignment at S-ischiensis_contig9:1964451..1965401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20614.1 ID=mRNA_S-ischiensis_contig9.20614.1|Name=mRNA_S-ischiensis_contig9.20614.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=951bp|location=Sequence derived from alignment at S-ischiensis_contig9:1964451..1965401+ (Schizocladia ischiensis KU_0333)
CGCGGGGGGAGTGATTCGGGGCGCGCGTTCGGTTTGCCCGGGTTGCCCAC
CGCAATACCGACCAGGGTGAGGGGCCAGACACCATGCCTGGGGAAGGTTC
CCGGGCGTCCAGCACCGCTGCGCAAGCACCACGTTCGCGGCAGAGCGGGT
CACGGAGGACGAAGGCGGCTGGGCCCGCGGCGAAGAAGAAGGGACAAGGA
GGGATGGTGGGACGGGCGTCAGATCTTTCGCTGGAACACAAGTTGACAGT
GATTGCGGAAGCGACGGAGCTGCCGCCCTTCGGCTTCCACGTCTACTGGC
TCCAGGAGCGTCTCAAGGAGCGGCTGGGCTTCCCCGTGTCCCATCGCGCG
ATAAACGAGTGCCTCTCGGCGTACTACAACCTGAGGGAATGGCAAGAACG
CTTCTTCGAGAACGAGTTGCCAGAAGATGCGGAGCCATTCTCGATTCCAG
ATAGCCTCTTGCAAGATGTTAACCTCTCGCAAGACAGCGGCGACGAAGAC
AGACGGCCGGCGTTCGGGCCTCAGGGGAACGGGTCCGCAGGATCGGCTCC
GAGCTCCGAGGCCACGGGCAAGGCCCAGTCTCACGGATCCGCAGAAGGCA
GGGCATCGCCACGGGATCATTCATGATGGCGAGGCCCAAAGTCGCGGGCT
GGATTGCGGGTGGGCTGACGTGTCGGCCGTTGCCAGTGTGCGGCCCGCTG
CCTCTGGGCTACAGTGCCACGGTGCTCATAATGCCGTGCAGGCATTTGGT
TCAGTGTCCGCACGGGAAAAATAGTGTAACCAGGAGTAGGCCCTCGAACG
AACTGGCCCCTCGGCCGCCGCGCTGGCGCGGCGGCCCTGCTTTGGCGGCC
CGGGGAGATTTGTTCGATGTCGCAGAGCGTGACAACCGTGCCGTGTCACG
CGAATACCTAGTGATAACATTTAATGTTCACTTCGATGAACGCACACACT
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1964451..1965401+

>mRNA_S-ischiensis_contig9.20614.1 ID=mRNA_S-ischiensis_contig9.20614.1|Name=mRNA_S-ischiensis_contig9.20614.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig9:1964451..1965401+ (Schizocladia ischiensis KU_0333)
ATGCCTGGGGAAGGTTCCCGGGCGTCCAGCACCGCTGCGCAAGCACCACG
TTCGCGGCAGAGCGGGTCACGGAGGACGAAGGCGGCTGGGCCCGCGGCGA
AGAAGAAGGGACAAGGAGGGATGGTGGGACGGGCGTCAGATCTTTCGCTG
GAACACAAGTTGACAGTGATTGCGGAAGCGACGGAGCTGCCGCCCTTCGG
CTTCCACGTCTACTGGCTCCAGGAGCGTCTCAAGGAGCGGCTGGGCTTCC
CCGTGTCCCATCGCGCGATAAACGAGTGCCTCTCGGCGTACTACAACCTG
AGGGAATGGCAAGAACGCTTCTTCGAGAACGAGTTGCCAGAAGATGCGGA
GCCATTCTCGATTCCAGATAGCCTCTTGCAAGATGTTAACCTCTCGCAAG
ACAGCGGCGACGAAGACAGACGGCCGGCGTTCGGGCCTCAGGGGAACGGG
TCCGCAGGATCGGCTCCGAGCTCCGAGGCCACGGGCAAGGCCCAGTCTCA
CGGATCCGCAGAAGGCAGGGCATCGCCACGGGATCATTCATGAATGCCTG
GGGAAGGTTCCCGGGCGTCCAGCACCGCTGCGCAAGCACCACGTTCGCGG
CAGAGCGGGTCACGGAGGACGAAGGCGGCTGGGCCCGCGGCGAAGAAGAA
GGGACAAGGAGGGATGGTGGGACGGGCGTCAGATCTTTCGCTGGAACACA
AGTTGACAGTGATTGCGGAAGCGACGGAGCTGCCGCCCTTCGGCTTCCAC
GTCTACTGGCTCCAGGAGCGTCTCAAGGAGCGGCTGGGCTTCCCCGTGTC
CCATCGCGCGATAAACGAGTGCCTCTCGGCGTACTACAACCTGAGGGAAT
GGCAAGAACGCTTCTTCGAGAACGAGTTGCCAGAAGATGCGGAGCCATTC
TCGATTCCAGATAGCCTCTTGCAAGATGTTAACCTCTCGCAAGACAGCGG
CGACGAAGACAGACGGCCGGCGTTCGGGCCTCAGGGGAACGGGTCCGCAG
GATCGGCTCCGAGCTCCGAGGCCACGGGCAAGGCCCAGTCTCACGGATCC
GCAGAAGGCAGGGCATCGCCACGGGATCATTCATGA
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