prot_S-ischiensis_contig9.20504.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20504.1
Unique Nameprot_S-ischiensis_contig9.20504.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length591
Homology
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BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.450e-14
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:    1 RPPDVRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGRARRVQLAE 60
            RPP VRDCN+F+R LGD GR+ +AV AYEAM++AG+ PTIVT+STLISRAG A +  LA+
Sbjct:  118 RPPQVRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
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BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.520e-13
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 0 
Query:  421 ARRVGEALELLEGMVLRREIPDQAALRSLFEAVQTAEEVEDAVGLIERSRKEGCLPDIDERTYSELLRACGRANSLVKAFLLVKEMKDSGVTPTE 515
            A +V  A ++LEGMV RR+ PD      L  AV TA  ++ AV L+ERSR EG   +I+E TYS LL ACGRA  L +AF +V+ M+++GV PTE
Sbjct:  555 ADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTE 649
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BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 3.080e-9
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:    7 DCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGRARRVQLAER 61
            +CNK +R LGD G ++  V  +EAM+ +GVRPT VTY TLISRAG  R+ +LA R
Sbjct:    1 ECNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASR 55
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BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-6
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:  419 AMARRVGEALELLEGMVLRREIPDQAALRSLFEAVQTAEEVEDAVGLIERSRKEGCLPDIDERTYSELLRACGRANSLVKAFLLVKEMKDSGVTPTE 515
            + AR +  A ++ E M+ +R+ PDQA L++LF+A+                R+      I   TYS +L AC RA ++VKAFLL K+M  +GVTP E
Sbjct:  378 SQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMRES---THISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGE 471
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BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A7R9UCA5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCA5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.580e-5
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:    5 VRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGR 52
            V+DCNKFIR LGD G +  A  AYE+ML   VRP +VT STL+SRA +
Sbjct:   72 VKDCNKFIRMLGDCGDVSSARAAYESMLTGYVRPDMVTLSTLMSRAAK 119
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CEM1_9STRA5.450e-1466.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSJ6_ECTSI2.520e-1350.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D4Z0_9EUKA3.080e-956.36Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0G4F8K7_VITBC2.010e-638.14Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7R9UCA5_9STRA1.580e-560.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 79..109
e-value: 1.1E-5
score: 23.3
coord: 216..249
e-value: 3.2E-9
score: 34.4
coord: 251..284
e-value: 1.4E-7
score: 29.2
coord: 181..215
e-value: 3.7E-10
score: 37.3
coord: 111..145
e-value: 4.8E-7
score: 27.6
coord: 8..39
e-value: 5.6E-5
score: 21.0
coord: 147..179
e-value: 4.3E-7
score: 27.7
coord: 482..514
e-value: 2.9E-6
score: 25.1
coord: 41..75
e-value: 1.1E-7
score: 29.6
coord: 517..548
e-value: 2.0E-6
score: 25.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 3..48
e-value: 1.1E-7
score: 31.9
coord: 248..297
e-value: 6.3E-11
score: 42.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 166..227
e-value: 8.9E-16
score: 57.7
coord: 63..121
e-value: 1.0E-13
score: 51.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..314
score: 6.73
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 214..248
score: 12.507
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 10.589
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 109..143
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 74..108
score: 11.652
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 514..548
score: 10.928
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 479..513
score: 11.312
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 179..213
score: 13.351
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 144..178
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 442..476
score: 7.136
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 11.005
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 11.301
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 497..565
e-value: 1.3E-10
score: 41.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..154
e-value: 1.6E-40
score: 141.4
coord: 419..583
e-value: 3.0E-29
score: 104.3
coord: 156..325
e-value: 3.1E-53
score: 183.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 14..279
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 70..245
coord: 105..314
coord: 3..108
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 431..562
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 431..562
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 70..245
coord: 105..314
coord: 3..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:835858..848417 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20504.1mRNA_S-ischiensis_contig9.20504.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 835858..848419 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20504.1 ID=prot_S-ischiensis_contig9.20504.1|Name=mRNA_S-ischiensis_contig9.20504.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=591bp
RPPDVRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRA
GRARRVQLAERFYREMLVQGIRPDVQAVNSLINAFAKAGRAARALETFAE
MRGLGITPSIITFNSMMDACAKAGDSSRAAEVLSLLQASGLRPNERTFSI
VMHLHALQGQVEEAFSILGEMRREGLRPNSVTYSALINACGRAGQLDRAL
RTLDDMCKDGVEPNVVTWTTLIDACGKQNELQKGFDLFKQMRAKGTRPNG
VTCSALMDACLKAGEIDLAFSVLQHMLDCGLQPTQVTYTSLLTECARLGQ
ADRAAMVLGALQLKPRGGRGTGGGGGGGGGSRGAASFDDGRLPPAAAHAN
PRGAAGSLVGGGGGGGSRGAASFDDGRLPSATAHANPTGPTGTLAGVGGG
GGGGAGARPPGGGSVSPDAMARRVGEALELLEGMVLRREIPDQAALRSLF
EAVQTAEEVEDAVGLIERSRKEGCLPDIDERTYSELLRACGRANSLVKAF
LLVKEMKDSGVTPTEQTYATLMQVCGAAEDSEAAVDVFKQMERSGVQPGL
PTYTSLLEIFCDDNARRAWAANRKERRPQADGPGPGGGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf