mRNA_S-ischiensis_contig9.20504.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.450e-14 Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query: 1 RPPDVRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGRARRVQLAE 180
RPP VRDCN+F+R LGD GR+ +AV AYEAM++AG+ PTIVT+STLISRAG A + LA+
Sbjct: 118 RPPQVRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 2.520e-13 Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 1261 ARRVGEALELLEGMVLRREIPDQAALRSLFEAVQTAEEVEDAVGLIERSRKEGCLPDIDERTYSELLRACGRANSLVKAFLLVKEMKDSGVTPTE 1545
A +V A ++LEGMV RR+ PD L AV TA ++ AV L+ERSR EG +I+E TYS LL ACGRA L +AF +V+ M+++GV PTE
Sbjct: 555 ADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTE 649
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA) HSP 1 Score: 64.7 bits (156), Expect = 3.080e-9 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 19 DCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGRARRVQLAER 183
+CNK +R LGD G ++ V +EAM+ +GVRPT VTY TLISRAG R+ +LA R
Sbjct: 1 ECNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASR 55
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A0G4F8K7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8K7_VITBC) HSP 1 Score: 62.4 bits (150), Expect = 2.010e-6 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 1255 AMARRVGEALELLEGMVLRREIPDQAALRSLFEAVQTAEEVEDAVGLIERSRKEGCLPDIDERTYSELLRACGRANSLVKAFLLVKEMKDSGVTPTE 1545
+ AR + A ++ E M+ +R+ PDQA L++LF+A+ R+ I TYS +L AC RA ++VKAFLL K+M +GVTP E
Sbjct: 378 SQARLLNRAFDMFERMIQQRQAPDQATLQTLFDAIXXXXXXXXXXXXXXXMRES---THISRVTYSAVLGACRRARTIVKAFLLFKDMMAAGVTPGE 471
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Match: A0A7R9UCA5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCA5_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.580e-5 Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 13 VRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAGR 156
V+DCNKFIR LGD G + A AYE+ML VRP +VT STL+SRA +
Sbjct: 72 VKDCNKFIRMLGDCGDVSSARAAYESMLTGYVRPDMVTLSTLMSRAAK 119 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20504.1 >prot_S-ischiensis_contig9.20504.1 ID=prot_S-ischiensis_contig9.20504.1|Name=mRNA_S-ischiensis_contig9.20504.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=591bp RPPDVRDCNKFIRALGDHGRIDEAVVAYEAMLRAGVRPTIVTYSTLISRAback to top mRNA from alignment at S-ischiensis_contig9:835858..848419+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20504.1 ID=mRNA_S-ischiensis_contig9.20504.1|Name=mRNA_S-ischiensis_contig9.20504.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=12562bp|location=Sequence derived from alignment at S-ischiensis_contig9:835858..848419+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:835858..848419+ >mRNA_S-ischiensis_contig9.20504.1 ID=mRNA_S-ischiensis_contig9.20504.1|Name=mRNA_S-ischiensis_contig9.20504.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3546bp|location=Sequence derived from alignment at S-ischiensis_contig9:835858..848419+ (Schizocladia ischiensis KU_0333)back to top |