mRNA_S-ischiensis_contig83.19987.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig83.19987.1
Unique NamemRNA_S-ischiensis_contig83.19987.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig83.19987.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.510e-7
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   22 QVNFAVDASELISTGEKLMGPFRASSALLSVPGMLRASFNSKTVRLQRLELSFDPQLVAAQLA 210
            +V + VD  E++   +  M PF A S  L VPGML+ASF++K+ RL  ++ SFDP + A QLA
Sbjct:  507 RVYYVVDPKEVMGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLA 569
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig83.19987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRD8_9PHAE6.510e-746.03BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig83contigS-ischiensis_contig83:262730..264335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003405.1
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817328.3739145-CDS-S-ischiensis_contig83:262729..2628241622817328.3739145-CDS-S-ischiensis_contig83:262729..262824Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 262730..262824 +
1695741030.3680081-CDS-S-ischiensis_contig83:262729..2628241695741030.3680081-CDS-S-ischiensis_contig83:262729..262824Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 262730..262824 +
1622817328.3858755-CDS-S-ischiensis_contig83:264183..2643341622817328.3858755-CDS-S-ischiensis_contig83:264183..264334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 264184..264334 +
1695741030.3789768-CDS-S-ischiensis_contig83:264183..2643341695741030.3789768-CDS-S-ischiensis_contig83:264183..264334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig83 264184..264334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig83.19987.1prot_S-ischiensis_contig83.19987.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig83 262730..264334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig83.19987.1

>prot_S-ischiensis_contig83.19987.1 ID=prot_S-ischiensis_contig83.19987.1|Name=mRNA_S-ischiensis_contig83.19987.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
GAGGNRGQVNFAVDASELISTGEKLMGPFRASSALLSVPGMLRASFNSKT
VRLQRLELSFDPQLVAAQLAGGSGVSPAAAAS
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mRNA from alignment at S-ischiensis_contig83:262730..264335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig83.19987.1 ID=mRNA_S-ischiensis_contig83.19987.1|Name=mRNA_S-ischiensis_contig83.19987.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1606bp|location=Sequence derived from alignment at S-ischiensis_contig83:262730..264335+ (Schizocladia ischiensis KU_0333)
GGGGCCGGCGGCAATCGTGGGCAAGTTAACTTTGCGGTGGACGCTTCGGA
GTTGATCTCTACGGGGGAGAAGCTCATGGGTCCTTTCCGTGCCAGGTGTG
CAAGTGTAGGAGGGTGCGAATGTGTTCACTGCTCACTAGTACTGTACTCG
TACGGGTACATGTGCTTCGAAGTACTGCTCCGTCTCGACCGAGGCGCGTG
GTCAATGGTCTCGGGACTACAGCAAGCACAACGTGAGTACATATGTATAC
TGTACTGTATTGCACTGTACGGGAGTGTGTGAGAGCGCGAGGTGTGCACT
GTGCACGAGTTTGTTCGAAGGGGGGAAGTGCCGTGGCGGGCTGGTGAGGC
CAAAGATGAATGCGACCGACTAAGCACCGGCTCGGTGCAAATGCAGCTCC
ACTGCTGGCTGGTTGTACTTCGAAGTATACTCCCAAGGATTCGTGTGCGC
TGCAAGGACAGTACAGGGCAGCACCTTGGCTAGTATTTGTATCTCAACCC
TTGGAGGAAGGTGGTACTGTAGTAAGTACTATACAAGGTACTGTATTGTA
CCGTACACCAGATGGCCGGGTTACAAGAGCATATTGTGCTTCCGGAAGTA
TATCGGACGGCAAACCTGAAGTTTCGACTCCAGGCGGTCGGCAAGACAGC
CAATGAGTACAGATGTATTTGTACTTCGGAAGTAGGATATATGTGCTGTC
CGGCGACCTATATAGCGGTCGGGATCAATCGTCTACTCCCGATTGTTCCC
CCCGAGACTGTCGGGTTGCCGGTGCGCCCGAGAGCACCTCTGTTAACCGC
GAAGAGACGCGCAAGTGCTCGCCGACGGCGACGCTTTGTCGGAGTCCAGG
GAACGGCCCCTCGCCCGGCTTACGGACGCCAAGGCATCGTGGCATTCCGG
GCTTGGCCAGTGCGCGGCCTGGCCGGTGCAAACCGGGCATGCTCCATCCC
GGCCTAGTTGGGATGCGAGAGTCAATGGCTAGATAGCTACTGTAGGTACT
GTACTCCTGTCGGAGGGCAACCCCAGGAAAATTTTACGTGGGGCTGTCAG
CAGGCACGTGAGGGTATGTCGCAAACAACCACTCTTAAGCCAGTGAGTGC
ATACACATGTGCATCATGATACTCGTATATACACAACACTACAGTACCTA
CAGTACGAGTACAGTACTGTAATGTAGTATGCGAGTACTTCGTACACTGC
AGTACGTGGGACGAGTGTACCACAGGCACAATAATCCGAGGGCAAACTTC
AAGCAATGCCTTGACCAACCATTGCCCCTCCCCCTCCCCCTCTCCCTCCC
CTCCCCCGCCCCCCctCCCCCTCCCCATCCCCATCCCCCTCTCCCCCCCC
CCACCCACCCCCCTCCCCCCCTCCCCATCCCCAACCCCCGCCCCCCCCCA
CCCCCTCCCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCTCCCT
CCAGCTCGGCGCTGCTCTCTGTGCCGGGGATGCTGCGCGCCTCCTTCAAC
AGCAAGACCGTCCGCCTCCAGCGCCTGGAGCTGTCCTTCGACCCGCAGCT
GGTGGCCGCGCAGCTCGCCGGCGGAAGCGGCGTGTCCCCCGCCGCCGCCG
CGAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig83:262730..264335+

>mRNA_S-ischiensis_contig83.19987.1 ID=mRNA_S-ischiensis_contig83.19987.1|Name=mRNA_S-ischiensis_contig83.19987.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig83:262730..264335+ (Schizocladia ischiensis KU_0333)
GGGGCCGGCGGCAATCGTGGGCAAGTTAACTTTGCGGTGGACGCTTCGGA
GTTGATCTCTACGGGGGAGAAGCTCATGGGTCCTTTCCGTGCCAGGGGGC
CGGCGGCAATCGTGGGCAAGTTAACTTTGCGGTGGACGCTTCGGAGTTGA
TCTCTACGGGGGAGAAGCTCATGGGTCCTTTCCGTGCCAGCTCGGCGCTG
CTCTCTGTGCCGGGGATGCTGCGCGCCTCCTTCAACAGCAAGACCGTCCG
CCTCCAGCGCCTGGAGCTGTCCTTCGACCCGCAGCTGGTGGCCGCGCAGC
TCGCCGGCGGAAGCGGCGTGTCCCCCGCCGCCGCCGCGAGCCTCGGCGCT
GCTCTCTGTGCCGGGGATGCTGCGCGCCTCCTTCAACAGCAAGACCGTCC
GCCTCCAGCGCCTGGAGCTGTCCTTCGACCCGCAGCTGGTGGCCGCGCAG
CTCGCCGGCGGAAGCGGCGTGTCCCCCGCCGCCGCCGCGAGC
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