prot_S-ischiensis_contig80.19844.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig80.19844.1
Unique Nameprot_S-ischiensis_contig80.19844.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length94
Homology
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 8.260e-54
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            MSSSVEEPLDLIRLSLDERI+VKCRGERELRGKL +YDQHLNMVLGDVEETVT VEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPP+RTT
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.250e-49
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            ++ SVEEPLDLIRLSLDERIYVKCRG+RELRGKL AYDQHLNMVLGDVEETVT  E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.890e-49
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT 93
            SVEEPLDLIRLSLDERIYVKCRG+RELRGKL AYDQHLNMVLGDVEETVT  E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRTT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.990e-47
Identity = 76/92 (82.61%), Postives = 88/92 (95.65%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            MSSSV+EPLDLIRLSL+ERIYVKCRGERELRGKL A+D+HLNM+LG+VEETVT  E+DE+T EEI+RTS+R++EMLFVRGDVVILVSPPLRT
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A485K5Q3_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485K5Q3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.720e-46
Identity = 73/90 (81.11%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            +++ EPLDLI+LSLDERIYVKCRGERELRGKLQAYDQHLNMVL DVEETVT+VE+D++TYEEIV+ +KR +EMLFVRGDVVIL++PPLRT
Sbjct:    2 ATITEPLDLIKLSLDERIYVKCRGERELRGKLQAYDQHLNMVLSDVEETVTSVELDQETYEEIVKQAKRQVEMLFVRGDVVILIAPPLRT 91          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC)

HSP 1 Score: 150 bits (380), Expect = 9.730e-46
Identity = 71/90 (78.89%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            +S++EPLDLI+LSLDERIYVKCRG+RELRGKLQAYDQHLNM+L DVEETVT+ EVD++TYEEIV+ +KR +EMLFVRGDV++LV+PPLRT
Sbjct:    2 ASIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 149 bits (375), Expect = 5.990e-45
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 0
Query:    2 SSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            S+ V+EP+DL+RLSLDERI+VK RG+RELRGKL AYDQHLNMVLGDVEE VT VEVDE+TYEEI++TSKR IEMLFVRGD VIL+SPPLRT
Sbjct:    3 STLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: K3ZB54_SETIT (U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=Poaceae TaxID=4479 RepID=K3ZB54_SETIT)

HSP 1 Score: 148 bits (373), Expect = 1.320e-44
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            +V+EPLDLIRLSLDERIYVK R ERELRGKL AYDQHLNM+LGDVEETVT VE+D++TYEEIVRTSKR+I  LFVRGD VILVSPPLRT
Sbjct:    8 AVKEPLDLIRLSLDERIYVKLRSERELRGKLHAYDQHLNMILGDVEETVTTVEIDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRT 96          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: A0A383W7B2_TETOB (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7B2_TETOB)

HSP 1 Score: 147 bits (371), Expect = 2.510e-44
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            ++V+EPLDLI+LSLDERIYVKCRGERELRG+L AYDQHLNM+LG+VEETVT VE+D++TYEEI++T KRSI  LFVRGD VIL+SPPLR+
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHAYDQHLNMILGEVEETVTTVEIDDETYEEIIKTQKRSIPFLFVRGDSVILISPPLRS 95          
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 147 bits (370), Expect = 4.550e-44
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEETVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 92
            + S+VEEPLDLIRLSLD+RIYVK RGERELRGKL AYDQHLNMVLGDVEETVT VE+DE+T EEI++  KR++EMLFVRGD VILVSPP+RT
Sbjct:   11 LGSTVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRKRTVEMLFVRGDGVILVSPPVRT 102          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS6_ECTSI8.260e-5494.62U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA1.250e-4988.17U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA2.890e-4991.11U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A4D9CUN8_9STRA2.990e-4782.61U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A485K5Q3_9STRA3.720e-4681.11U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=S... [more]
A0A067C375_SAPPC9.730e-4678.89U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=S... [more]
A0A0M0JVC1_9EUKA5.990e-4581.32U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
K3ZB54_SETIT1.320e-4484.27U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=P... [more]
A0A383W7B2_TETOB2.510e-4477.78U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=T... [more]
L8HA54_ACACA4.550e-4480.43U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..88
e-value: 4.5E-20
score: 82.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 12..88
e-value: 7.2E-20
score: 70.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..90
e-value: 2.4E-30
score: 106.2
NoneNo IPR availablePANTHERPTHR13110:SF11coord: 3..92
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 3..92
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:662060..665511 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19844.1mRNA_S-ischiensis_contig80.19844.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig80 661913..665538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig80.19844.1 ID=prot_S-ischiensis_contig80.19844.1|Name=mRNA_S-ischiensis_contig80.19844.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=94bp
MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLQAYDQHLNMVLGDVEE
TVTAVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR040002Sm-like_LSM3
IPR010920LSM_dom_sf