prot_S-ischiensis_contig8.19764.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19764.1
Unique Nameprot_S-ischiensis_contig8.19764.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length291
Homology
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 3.230e-78
Identity = 137/267 (51.31%), Postives = 161/267 (60.30%), Query Frame = 0
Query:   20 LRFSSYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCGDPSAVSSLCQALELLRGTRERGGA 286
            LRFSSYSLL+GG     SLGLPTGALFAPFA + P+P R+ RQPVLC  C AYPSPFC VDP +G W CCFC + NPCY EDFIGS+PA H +S+PEM+ K VEYAEQ LT V+ GLS  S   G                             A++ VVDGNM E AL  LA SV +VL  +D +A++ LV FTGVVSVYRL + G  VAD LPG E L+   +   L  G+  HF   R G      +LC  L+LLRG     GA
Sbjct:   10 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFPEMACKAVEYAEQDLTGVLNGLSALSLATGPHRRRDRQAAAP-----------------AHLLVVDGNMREDALVDLARSVDEVLGKMDPEALISLVVFTGVVSVYRLGRPGAAVADVLPGGETLSDQDVDRRLSEGEKDHFVSVRGGR----EALCTILKLLRGVGNGTGA 255          
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.250e-35
Identity = 103/285 (36.14%), Postives = 134/285 (47.02%), Query Frame = 0
Query:    5 EAAAEGVGDGA-------DEAALRFSSYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMR--GLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCGDPSAVSSLCQALELLRGT 280
            EA AEG+   +       D   LRF + S ++GG+      GLP GA+ +PFA+V P PP +   P LCL C AY +PFC  D ASG W CCFC  SNP Y+E   G          PE++  VVEY +Q   + +   G+ L +                                 A   V+DGN    ALA LA S+A+VLP LD  + V L+ FTGVV+V+RLA+ G  VA  LP    L P    A L +  G  F   R       + L Q L  L+G+
Sbjct:    7 EADAEGINSASEQQQQQNDTPLLRFGARSAVEGGRQ-----GLPCGAVLSPFAHVHPPPPALHLAPALCLNCAAYINPFCSTDSASGTWRCCFCKHSNPGYSERSKG----------PELASSVVEYIQQDAHSQIHTAGVQLAT--------------GPHRRRGSEATTAAASGTHAIALVIDGNACGQALADLAGSIAEVLPQLDQGSSVALLVFTGVVTVFRLARDGAAVAHVLPATRVLPPAATLAALGSAAGATFGTLRWDG----AKLAQILSSLKGS 258          
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.660e-20
Identity = 74/190 (38.95%), Postives = 92/190 (48.42%), Query Frame = 0
Query:  116 EMSFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCG-------DPSAVSS------------LCQALELLRGTRERGGA 286
            EM+ K VEYAEQ LT V+ GLS  S   G                             A+V VVDGNM E AL  LA SV +VL  +D +A++ LV FTGVVSVYRL + G  VAD LPG E L+   +   L  G+  HF   R G       +P A+++            L Q L+LLRG  +  GA
Sbjct:   60 EMACKAVEYAEQDLTGVLNGLSALSLATGPHRRRDRQAAAP-----------------AHVLVVDGNMREDALVDLARSVDEVLSKMDPEALISLVVFTGVVSVYRLGRSGAAVADVLPGGETLSDQDVDRRLSEGEKDHFVPVRGGREALCTVEPEALAAATDYFEDLGEKALSQVLKLLRGVGDGTGA 232          
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A7S1NFL3_9EUGL (Protein transport protein SEC23 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NFL3_9EUGL)

HSP 1 Score: 58.5 bits (140), Expect = 5.800e-6
Identity = 56/220 (25.45%), Postives = 85/220 (38.64%), Query Frame = 0
Query:   32 KDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIGSTPAAHHESYPEMSFK---VVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYL 248
            K++ + + LP   L+ P    S   P ++ +PVLC GC A  +P C VD  S  W C FC   N      + G  P  +  SYP   +    ++EY             +  P  G+                             Y F +D  M    L  L  S+ Q L  L  DA+VG+V F  +V+V+ +    +  +  L G +  + D +  YL
Sbjct:   25 KEHAQHMVLPLSLLYTPLKAKSSTLPLLETEPVLCKGCKAILNPSCRVDWTSRLWVCPFCLTRNA-LPPHYAGVNPQ-NPASYPRELYPQNTIIEYL------------IKRPPTGNP---------------------------VYFFCIDTCMQTDELESLKDSILQSLSLLPEDALVGVVTFGAMVTVWEVGFTELHKSYVLGGGKEYSTDQMSDYL 203          
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A1U8BD21_NELNU (Protein transport protein SEC23 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8BD21_NELNU)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-5
Identity = 70/215 (32.56%), Postives = 95/215 (44.19%), Query Frame = 0
Query:   20 LRFSSYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIG----STPAAHHESYPEMSFKVVEYAEQSL--------TAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRL 222
            LR+S ++     K    SL +P   +  P    +  P  +   P++C  C A  +P+  VD  S  W C FC + NP +   + G    + PA   E +P  S     +  + L         A+  G  L S  L S   XXXXXXXXXXX             A +VFVVD   PE  L  L   +  V+  L  +A+VGLV F  +VSVY L
Sbjct:   12 LRWS-WNSWPASKSEASSLVIPLSVMCTPLMEFTELP-LLPYDPLVCSRCGAVLNPYARVDYQSRLWVCPFCYQKNP-FPRSYAGIGENNLPA---ELFPTYSTVEYHHGRKGLGLGSNINSNAIWGGNRLSSSSLSSLMSXXXXXXXXXXXSSLSCTDSRGNGPA-FVFVVDTCSPEEELRALKNELLLVVAQLPENALVGLVTFDSMVSVYDL 219          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE3.230e-7851.31Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A835ZAM5_9STRA3.250e-3536.14Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
D8LGM0_ECTSI2.660e-2038.95Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A7S1NFL3_9EUGL5.800e-625.45Protein transport protein SEC23 n=1 Tax=Eutreptiel... [more]
A0A1U8BD21_NELNU1.400e-532.56Protein transport protein SEC23 n=1 Tax=Nelumbo nu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 63..97
e-value: 1.1E-7
score: 31.8
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 173..279
e-value: 1.3E-10
score: 43.0
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 174..240
NoneNo IPR availableGENE3D2.30.30.380coord: 57..104
e-value: 1.1E-7
score: 33.9
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 20..251
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 52..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3744660..3752493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19764.1mRNA_S-ischiensis_contig8.19764.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3744660..3752812 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19764.1 ID=prot_S-ischiensis_contig8.19764.1|Name=mRNA_S-ischiensis_contig8.19764.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=291bp
MAGAEAAAEGVGDGADEAALRFSSYSLLQGGKDNPESLGLPTGALFAPFA
NVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTE
DFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMRGLSLDSPGLGSGGGHG
GGAGSSRGIGSSGGGGGGGGCGAAYVFVVDGNMPEVALAQLAASVAQVLP
SLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDA
GKGRHFTDARCGDPSAVSSLCQALELLRGTRERGGAITTNG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006895Znf_Sec23_Sec24
IPR036465vWFA_dom_sf
IPR037364Sec23
IPR036174Znf_Sec23_Sec24_sf