mRNA_S-ischiensis_contig8.19764.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19764.1
Unique NamemRNA_S-ischiensis_contig8.19764.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 2.160e-76
Identity = 137/267 (51.31%), Postives = 161/267 (60.30%), Query Frame = 2 
Query:  377 LRFSSYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCGDPSAVSSLCQALELLRGTRERGGA 1177
            LRFSSYSLL+GG     SLGLPTGALFAPFA + P+P R+ RQPVLC  C AYPSPFC VDP +G W CCFC + NPCY EDFIGS+PA H +S+PEM+ K VEYAEQ LT V+ GLS  S   G                             A++ VVDGNM E AL  LA SV +VL  +D +A++ LV FTGVVSVYRL + G  VAD LPG E L+   +   L  G+  HF   R G      +LC  L+LLRG     GA
Sbjct:   10 LRFSSYSLLEGGDTAAGSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFPEMACKAVEYAEQDLTGVLNGLSALSLATGPHRRRDRQAAAP-----------------AHLLVVDGNMREDALVDLARSVDEVLGKMDPEALISLVVFTGVVSVYRLGRPGAAVADVLPGGETLSDQDVDRRLSEGEKDHFVSVRGGR----EALCTILKLLRGVGNGTGA 255
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.810e-34
Identity = 98/267 (36.70%), Postives = 127/267 (47.57%), Query Frame = 2 
Query:  365 DEAALRFSSYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMR--GLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCGDPSAVSSLCQALELLRGT 1159
            D   LRF + S ++GG+      GLP GA+ +PFA+V P PP +   P LCL C AY +PFC  D ASG W CCFC  SNP Y+E   G          PE++  VVEY +Q   + +   G+ L +                                 A   V+DGN    ALA LA S+A+VLP LD  + V L+ FTGVV+V+RLA+ G  VA  LP    L P    A L +  G  F   R       + L Q L  L+G+
Sbjct:   25 DTPLLRFGARSAVEGGRQ-----GLPCGAVLSPFAHVHPPPPALHLAPALCLNCAAYINPFCSTDSASGTWRCCFCKHSNPGYSERSKG----------PELASSVVEYIQQDAHSQIHTAGVQLAT--------------GPHRRRGSEATTAAASGTHAIALVIDGNACGQALADLAGSIAEVLPQLDQGSSVALLVFTGVVTVFRLARDGAAVAHVLPATRVLPPAATLAALGSAAGATFGTLRWDG----AKLAQILSSLKGS 258
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.860e-19
Identity = 74/190 (38.95%), Postives = 92/190 (48.42%), Query Frame = 2 
Query:  665 EMSFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDAGKGRHFTDARCG-------DPSAVSS------------LCQALELLRGTRERGGA 1177
            EM+ K VEYAEQ LT V+ GLS  S   G                             A+V VVDGNM E AL  LA SV +VL  +D +A++ LV FTGVVSVYRL + G  VAD LPG E L+   +   L  G+  HF   R G       +P A+++            L Q L+LLRG  +  GA
Sbjct:   60 EMACKAVEYAEQDLTGVLNGLSALSLATGPHRRRDRQAAAP-----------------AHVLVVDGNMREDALVDLARSVDEVLSKMDPEALISLVVFTGVVSVYRLGRSGAAVADVLPGGETLSDQDVDRRLSEGEKDHFVPVRGGREALCTVEPEALAAATDYFEDLGEKALSQVLKLLRGVGDGTGA 232
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A7S1NFL3_9EUGL (Protein transport protein SEC23 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NFL3_9EUGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.610e-6
Identity = 57/220 (25.91%), Postives = 88/220 (40.00%), Query Frame = 2 
Query:  413 KDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSN--PCYTEDFIGSTPAAH-HESYPEMSFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYL 1063
            K++ + + LP   L+ P    S   P ++ +PVLC GC A  +P C VD  S  W C FC   N  P +        PA++  E YP+ +  ++EY             +  P  G+                             Y F +D  M    L  L  S+ Q L  L  DA+VG+V F  +V+V+ +    +  +  L G +  + D +  YL
Sbjct:   25 KEHAQHMVLPLSLLYTPLKAKSSTLPLLETEPVLCKGCKAILNPSCRVDWTSRLWVCPFCLTRNALPPHYAGVNPQNPASYPRELYPQNT--IIEYL------------IKRPPTGNP---------------------------VYFFCIDTCMQTDELESLKDSILQSLSLLPEDALVGVVTFGAMVTVWEVGFTELHKSYVLGGGKEYSTDQMSDYL 203
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A7S4G9U1_9EUGL (Protein transport protein SEC23 (Fragment) n=3 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G9U1_9EUGL)

HSP 1 Score: 60.5 bits (145), Expect = 3.400e-6
Identity = 59/223 (26.46%), Postives = 84/223 (37.67%), Query Frame = 2 
Query:  413 KDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSN---PCYTEDFIGSTPAAHHESYPEM---SFKVVEYAEQSLTAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYL 1063
            KD   S+ LP   LF P    S     +Q +P +C GC A  +P C VD  S  W C FC   N   P Y E        A  ++YP+    +   VEYA            ++ P  G                              Y F +D +MP   L  L  S+ Q    L  +A+VG+V F  +V+V+ L    +  +    GH+    + +  YL
Sbjct:   25 KDQANSMVLPLALLFTPLKVKSTNLAVLQYEPTMCKGCKAVLNPQCRVDWTSKLWICPFCLTRNQLPPQYAE--------ATQQNYPKELLPNSATVEYA------------MNRPSAGPP---------------------------VYFFCIDTSMPVEELESLKDSIVQSFSLLPEEALVGVVTFGSMVTVWELGFNELHKSYLFGGHKEYPIEQVAEYL 200
[Close]
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Match: A0A1U8BD21_NELNU (Protein transport protein SEC23 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8BD21_NELNU)

HSP 1 Score: 57.0 bits (136), Expect = 4.400e-5
Identity = 68/211 (32.23%), Postives = 92/211 (43.60%), Query Frame = 2 
Query:  389 SYSLLQGGKDNPESLGLPTGALFAPFANVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTEDFIG----STPAAHHESYPEMSFKVVEYAEQSL--------TAVMRGLSLDSPGLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYVFVVDGNMPEVALAQLAASVAQVLPSLDNDAVVGLVAFTGVVSVYRL 985
            S++     K    SL +P   +  P    +  P  +   P++C  C A  +P+  VD  S  W C FC + NP +   + G    + PA   E +P  S     +  + L         A+  G  L S  L S   XXXXXXXXXXX             A +VFVVD   PE  L  L   +  V+  L  +A+VGLV F  +VSVY L
Sbjct:   15 SWNSWPASKSEASSLVIPLSVMCTPLMEFTELP-LLPYDPLVCSRCGAVLNPYARVDYQSRLWVCPFCYQKNP-FPRSYAGIGENNLPA---ELFPTYSTVEYHHGRKGLGLGSNINSNAIWGGNRLSSSSLSSLMSXXXXXXXXXXXSSLSCTDSRGNGPA-FVFVVDTCSPEEELRALKNELLLVVAQLPENALVGLVTFDSMVSVYDL 219
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE2.160e-7651.31Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A835ZAM5_9STRA8.810e-3436.70Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
D8LGM0_ECTSI1.860e-1938.95Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A7S1NFL3_9EUGL2.610e-625.91Protein transport protein SEC23 n=1 Tax=Eutreptiel... [more]
A0A7S4G9U1_9EUGL3.400e-626.46Protein transport protein SEC23 (Fragment) n=3 Tax... [more]
A0A1U8BD21_NELNU4.400e-532.23Protein transport protein SEC23 n=1 Tax=Nelumbo nu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3744660..3752812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog3218.PP1S196_14V6.1
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
EggNOG free text desc.transport) protein
EggNOG OGs37NTS@33090,3GEAK@35493,COG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size1192
Cds size873
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.3644836-CDS-S-ischiensis_contig8:3744659..37447161622817302.3644836-CDS-S-ischiensis_contig8:3744659..3744716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3744660..3744716 -
1695741009.7070677-CDS-S-ischiensis_contig8:3744659..37447161695741009.7070677-CDS-S-ischiensis_contig8:3744659..3744716Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3744660..3744716 -
1622817302.375951-CDS-S-ischiensis_contig8:3746106..37462741622817302.375951-CDS-S-ischiensis_contig8:3746106..3746274Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3746107..3746274 -
1695741009.7249393-CDS-S-ischiensis_contig8:3746106..37462741695741009.7249393-CDS-S-ischiensis_contig8:3746106..3746274Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3746107..3746274 -
1622817302.3883684-CDS-S-ischiensis_contig8:3747004..37470611622817302.3883684-CDS-S-ischiensis_contig8:3747004..3747061Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3747005..3747061 -
1695741009.7357614-CDS-S-ischiensis_contig8:3747004..37470611695741009.7357614-CDS-S-ischiensis_contig8:3747004..3747061Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3747005..3747061 -
1622817302.3997781-CDS-S-ischiensis_contig8:3749340..37495851622817302.3997781-CDS-S-ischiensis_contig8:3749340..3749585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3749341..3749585 -
1695741009.749047-CDS-S-ischiensis_contig8:3749340..37495851695741009.749047-CDS-S-ischiensis_contig8:3749340..3749585Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3749341..3749585 -
1622817302.4099576-CDS-S-ischiensis_contig8:3751718..37519771622817302.4099576-CDS-S-ischiensis_contig8:3751718..3751977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3751719..3751977 -
1695741009.7604558-CDS-S-ischiensis_contig8:3751718..37519771695741009.7604558-CDS-S-ischiensis_contig8:3751718..3751977Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3751719..3751977 -
1622817302.4200683-CDS-S-ischiensis_contig8:3752406..37524931622817302.4200683-CDS-S-ischiensis_contig8:3752406..3752493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3752407..3752493 -
1695741009.7721672-CDS-S-ischiensis_contig8:3752406..37524931695741009.7721672-CDS-S-ischiensis_contig8:3752406..3752493Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3752407..3752493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.4303172-UTR-S-ischiensis_contig8:3752493..37528121622817302.4303172-UTR-S-ischiensis_contig8:3752493..3752812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3752494..3752812 -
1695741009.7933831-UTR-S-ischiensis_contig8:3752493..37528121695741009.7933831-UTR-S-ischiensis_contig8:3752493..3752812Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3752494..3752812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19764.1prot_S-ischiensis_contig8.19764.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3744660..3752493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19764.1

>prot_S-ischiensis_contig8.19764.1 ID=prot_S-ischiensis_contig8.19764.1|Name=mRNA_S-ischiensis_contig8.19764.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=291bp
MAGAEAAAEGVGDGADEAALRFSSYSLLQGGKDNPESLGLPTGALFAPFA
NVSPAPPRVQRQPVLCLGCWAYPSPFCEVDPASGAWTCCFCGRSNPCYTE
DFIGSTPAAHHESYPEMSFKVVEYAEQSLTAVMRGLSLDSPGLGSGGGHG
GGAGSSRGIGSSGGGGGGGGCGAAYVFVVDGNMPEVALAQLAASVAQVLP
SLDNDAVVGLVAFTGVVSVYRLAQRGVLVADTLPGHEALAPDGIGAYLDA
GKGRHFTDARCGDPSAVSSLCQALELLRGTRERGGAITTNG
back to top

mRNA from alignment at S-ischiensis_contig8:3744660..3752812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19764.1 ID=mRNA_S-ischiensis_contig8.19764.1|Name=mRNA_S-ischiensis_contig8.19764.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8153bp|location=Sequence derived from alignment at S-ischiensis_contig8:3744660..3752812- (Schizocladia ischiensis KU_0333)
GGACATTGTACAATCAGCAACACGCCGTGCGAAGCGCAGCAGCAGCTGCA
GCAGGCGCCCTGGTTGCGACATTATAGTTTTTTTGGGATGACAGGCTCCC
GAGCGTGATACTTCAGTAGAATCAGTACTACCTGCTGCTAAGTTACTCCA
GTTGCCAAGTCGGTGTGTGTGTGCACGAGGATCTCTGCACCAGTGCAGCA
TCTTGTGTTCCGCAAGACGTGGCCTGAGGCAGGTTTAAGGGTACCGGCCT
TATTGCGAAGCCCAGGGACGGCGGTGGCGTTTTCCGGCCACCGCGGCAGC
AGGGGTGGCACGTGGGACCATGGCGGGAGCGGAGGCTGCCGCGGAAGGGG
TAGGGGACGGCGCAGATGAGGCAGCTCTACGTTTCTCCTCCTATTCGCTG
CTGCAGGTGATCAGCGTGTCGGTGCAACAACATGGAAAAGCTACCCTTGC
GTGCGGTTGTATTTGTTATTCGCTGCAGTAGCGCAGCAGCCTTAGGCCGC
CACATCAAACTCAGCAGCGGCTGTACGCTACATCATCAGGCCAGGGGTTG
TCCGGCCCCACTCGGCAGAGCGAGAAACTGCTGGTGGGGCAGGAGGCAGG
CAGGCAGGCAGGGTAGTACATGGCACGAACAAAAAACTTTCGATACTTTG
CGGTAAAGCGGTGCGGTGATCTAGCACGATTCGCCTGATCCCCACTGACA
ACGTTTGCATGCTGGTTGATACAGCCACCACGGAGTCCAACACAACGACG
AGTTCCGAGTAGCCAACCAGGCATCAGTATTCCATGCCCCCCCCCCCCCG
CCCCTCCTGCTGCTGCTGCTGCCCCCGGCCGGCAGGGTGGAAAAGACAAC
CCAGAGAGCCTGGGGTTGCCCACCGGGGCCCTTTTTGCGCCCTTTGCGAA
TGTGAGCCCGGCCCCGCCTCGTGTTCAGCGGCAGCCAGTCCTCTGCCTTG
GGTGCTGGGCCTACCCCAGCCCCTTCTGTGAGGTGGACCCGGCTTCCGGG
GCCTGGACCTGCTGCTTCTGCGGTCGGTCCAACCCGTGCTACACGGAGGA
CTTCATTGGCTCCACGCCCGCCGCGCACCATGAGTCCTACCCAGGTGCTG
CAATGTCATACTGTGTACTTCGAAGTATGCACTCACGTGGTGCTTGCCGT
AGTCCCGAGACCATTGACCACGCGCCTCGGTCGAGACATATTTCGGGGGC
GTATTAGGTCTCATTGGCTCGTCCTGCGACAAAGCCGTGCGTGCACAACT
TAGTCGACGGCCCGAAGTTCAACTTTGGGTTTGCCCTCCTGCAGGAGCAG
CTTTTTCGGCATTGGCTCTCAACTATTGTATACTACTCTATGCATGGATA
CGGTCAAACCGTTTGAGTACTACTAACTATACTACTCTATACTGTTAAGT
CAAAACTTTGGGTTTGCCATCCTGCAGGAGCAGCAATTTCGGCATGGGCT
CTCTACTGCACTACTCTATGCATGGATACAGTCAAACCATTTAAGTGCTA
CTACTAGTATCTATACTCTATAGTTAGGTCAAAACTTTGGGTTTGCCCTC
CTGCAGGAGCAGCTCGTTTGGCATCGACTCTCAACTACACTACTCTATGC
ATGGATGCAGTCAAACATTTGAGTGGTACTACTGTAACTGTCCTACAGTA
CAGTACGTACTTGAGTCAAAACTTTGTGTTTGCCCTCCTGCAGGAGTATC
TATTCAGGCGCTGACTTGCGCGGGTCCCAACTAATAGTGGGCCGAGACAC
ACTTACAGCAATGTACTGTAGTGTGCTTCGAAGTGTGTGTACTGTTCTCA
CACCTAACAGTGCCTGCCGTAAGTCCCGAGACCATTGACCACGCGCCCCA
CCCCCCTCCCTCCCCTGGCAATGTATTCGGTGTTCTCACTCATGCATGCG
CTGTACTGTGTGTGTACTCACGTTTGGACGAGGTTTATCGCTGTGTTGTA
CGAAACATTTTCGGCACCGCACGGGTTGCGCATGCCACTGGCGGGTAGGC
GTTACGTAGGCCGTGTATCCACCGGCCAGCCCCTCACCGAAGTCCCTTGC
CAGGGAAGTTGGACGTTGTATCACTTGCCTTGGAATTGATATACCAAGTA
GTGTTTCAACCACGCCTGGCTGCACCAGAGTGTCTGCATGCGGAAGTTAA
GTGCAGGGTACTGTACTAGTATGCAATACAGTACGGCCCTACGCCTTGTT
CCGAGCATATTTGGTACTTCGTACATTATTCGCCTTGGGCATGCCGTAGC
CCAGAAATGATTGGCCACGCGACCTCTTCTGAAATCGGAGCAATGAAGGC
ATGTGCGCTGTACGCTATGTACTTGTTGTGAGCACAGTAGCACATAAATA
GGCATTGCTGCTGCTGCTCTGCCGTAGGAGGCTGCCAAGCCATTTTCAAA
GCGCAGTGCATGGCTGCTCCGTCTCGATCGAGGCGCGTGGTCAATGGTCT
CGGGACTACGGCAAGCACAACGTGAGTACATATACTATTCTTTGTATATA
TATATATACGAAGCACTAGCCTGCTCTGTCTCGACCGAGGCGCATGGTCA
ATGGTCTCGGGACTACGGCAAGCACCACGTGAGCGAGTACATATCCTATA
TATTTACGATGTACGAAGTACTGAATAGGTGTACTGTAGGCATTGCTTGC
TTACTCCGCTCAGGAGGGTGCAAGGCCAGCGGCCGCCAGCCTGCATTGAG
CACAGCGTGAGTACACTGCACATACATGGACTTGGCCGCCCCTCCGCTTC
TGGCGGTGGGGTGGCCACCCCCTCCCACCCTGGCTCTGCCCGGGGAGGGA
GGGGGCCTGCTCCGTCTCGACCAAGGCGCGTGGTCAATGGGACTACGGCA
AGCACAACGTGAGTACATGCTACGTAAGTAGTATATACTACTTCGAAGTA
CTTAGTTTACACAGACACGTGCACAGACACGCATGCTCGCAAACACACGC
CAACACACACACATGCTCACACATAAAAACACACACGCACACACAGAGCC
CAGCCCGGCACACATAGGCACACACTCATTCCGGTCCCAACCTCCTAACA
TCCCGGTCCGCGCCCCGCCTCGCTCTTCGCCGCAACACTATATGTACTCA
CGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGTGCGAG
ACTGCTACTTATAAAGAAAAATCACTCGCTGAGCTTGTATTCGAAACACA
ACAAACAATGCCATTACGTGCGGGCAGAAATGTCTTTCAAGGTGGTGGAG
TATGCAGAGCAGTCCCTGACAGCGGTCATGAGAGGTCTCTCCCTGGACAG
CCCCGGCCTTGGCAGCGGCGGCGGTCATGGTGGTGGCGCGGGCAGCAGTC
GTGGCATTGGCAGCAGTGGGGGCGGCGGCGGCGGCGGCGGGTGTGGGGCA
GCCTATGTGTTCGTGGTGGATGGAAACATGCCTGAGGTAGCGCTGGCCCA
GCTTGCCGCCTCTGTGGCACAGGTCAGTGAGGGCTACTCGAGTACATGGA
CAACTGCATATATATATGCACTCATGCTCTGCTTGCCGTAGTCCCGAGAC
CATTGACCAAACGCCTCGGTCGAGACGGAGCAGGACCCCTCCCTCCCCTG
GCAGCACGCCCCCCATCCCCGTACCTACAGTAGTATATAGAGGACTAAAA
TGGTGCTGTAAGGTGGGTGGCATGCCAGGACACAGGGGGGAACCTCTCCG
ACATATTTCCGGAAGTACTTGGAAGTACATGTAGAAGTAGTGCATATGTG
TCGGACAGGTTACCGCGGGCACCCTGTGCATGCCACCGGCCGGTGCCATG
TGATGTCACGCGATGTGATGTCAAACTACGGGACAACATCAGAGTACACA
TGACATCATATCACATGTGATGTCAAACCACATTACATTAGAGTGCACAT
CGCATCACATCACACCACACCACATGCGATTTCAAACCACGGTACATCAG
AGTACACACCACATCATATCACATGCGATGTCAAACCACACTACATTAGA
GTGCACATCATGTCACATCACATCACATCACATGTGATATCAAACTACGG
TACATCAGAGTACACATCACATCATATCACATGTGATGTCAAACCACATT
ACATTAGAGTGCACATCGCATCACATCAACTCACATCACACCACATGTGA
TATCAAACTACGGTGCATCAAGAGTACACATCAAATCGTATCACATGTGA
TGTCAAACCACATCACACTAGAGTGCACATCGTATCACATCACATCACAT
CACACCACATGTGATATCAAACTACGGTGCATCGAGAGTACGCATCACAT
CATATCACATGTGATGTCAAACCACACTACTTCAGTACTTCCAAGTACTT
CGAAGTACACTAGAGTGCGCAGCACATCGCATCACATCACACCACATGTG
TTGTCAAATTACGGTACATCAGAGTGCACATCACATCACATCACATGTGA
TGTCAAACCACACTACATTAGAGTGCACATCACATCACACCACGTGTTAC
GTCAAACTACGGTACACCAGAGTATACTACGTAGTATGTATACAACATAC
TCGTATTGTGCTTGCCATAGTCCCGAGACCATTGACCACGCGCCTCAGTC
GAGACGGAGCAGGCTACATGTCACATCACATCACACTACCATAGAGCTAG
TATGCTGCCGTACGTGCTGGACCGCTGGCCACCCCCACTCGTGTGCATGT
GCAAAGTCCCTCTAGAAGTAGCCATGCAGTGATGGAATATCGACCAGTGG
ATAGCTGTTGGGATCGACTAATTTTGGTGGTGGCGTTACTAGCTACTTGG
AAATACTTCGAAGTAGTGTGGGCCAAACTATCGAATATCGACTTTCGATA
GATAATCGATCAATACTGTCGAAAAATTGGTTTATTTGCTTGGATATTCA
TCACTGTAGCCATGTGGCCGCTGGCCTCGTGTCCTAGGTACCTACTGTGC
CGGGGGGAGCATGCTGGATGTAGGTATACCGCCCAAGGGCGGGTTGCGCA
CCGATTTTGCACCTGCCATTTGTTACGTCACCGTACTGCCACTGTACTAC
TGCGCTGTACTGTACTGTACTGTGCTTTGCGGTATGGCACTGTACGGTGC
GGTACTGTACTGCACTGTTCTGCTTTGACTTGGTTCTCTTACACACATGG
ACTTGGCCACCCCTCCGCGTCTGGCGGGGGGGTGGCCACCCCCTCCCACC
CTGGCTCTGCCAGGGGAGGGAAGGGTCCTGCTCCGCCTCGCACGAGGCGC
GGGGTAAATGGTCTTGGGACTACGGCAAGCACCACGTGAGTACATTACAT
ATATATATATACACACACATGCTATACTCTATTGTAGTTGAACACACCTC
ACATCACGCGGGTGACGATAGCAAGTACGGTGCTGCACTGTACTGCACTC
AGCCGAGGCCCGGAGACCAGTGATGGAATATCGATCAGTAGATAGTTATC
GGGCTCGAATTATTTTGCGGGTGGCGTTACTAACTACCTGGATTTAGTGT
GGGCCAAACTATCGAATATCGACTATTGAAAGCTACACAGATCAGTACTG
TCGATAAATAGGTTCGTTTGCTTAGATATTCCATCACTGCGGCAATGCAG
CTCGCGAATACCCCCCCCCCCCTGCCCCCGCTCCATCATCCTACCGATGC
CGCGTCCGGGCGGTGGAAATCAATCGATGGCACGTGGTGATGTGATTGGC
CGGTGGCGTACTGTACATCTGCCCGGCGCTCGGCTTGGGGTGTGTTTGCA
GGTACTACCTTCCCTGGACAACGACGCGGTGGTTGGCCTGGTGGCCTTCA
CAGGCGTGGTGAGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGT
GTGTGCATGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGTGTGTGTGTGC
GTGTGTGTGTGTGTGTGCGCGCGTGCGTGTGTGTGTGTGATGTGATGCGA
TGTGCACGGAGCAGTTTGGCCGTGAGTGTTGGGTGCGTGTGTGATGTGAT
GCGATGTGCACACACAAACGCAGTATTGCTAGCAGGAACAACACAGGGCG
AGGTGCTGGCCACGTCACTGAAGAACTCAACAGTGGCCCTTGCTTATAGC
TCGCCAGCGGAAGCTTGTGTCACGGTGGGGAAGGGGAGAAAAGGACTACT
GTAGTACAGTGGCCGACAATCTGCCCAGGCCACTCCTACAATTGTACTCT
GTTCTTGTTTCATTTTCACGACAAGAAACGAAAACAACCGACGTGGATAT
GGACCAGGTGTCGGTGTACCGGCTGGCCCAGCGGGGGCACTCGGACTGTT
CTGTACTCTGCTGTAGTGTAGCGGCAGACCCGCCGCCCAGACCACTCCTA
CCTACGTACTCCGTTCTTGTGTCTCGTTTTCACGACAAGAAACGAAAACA
ACCACCGTGAAGGCGAGTGAAAGGAAGGGCTCCCGGGGAGGTGGGGCCCT
GCGCTCGCTTAGGTAGGGATACCTCTTCTTTCCCACTCGCTTGTTTATCT
TCATACCCCCCCCCACAAAACAACGTGGAATGGACCAGGTGTCCGTATAC
CGCCTGGCCCAGCGGGGCGTGCTGGTGGCCGACACCCTTCCCGGCCATGA
GGCGCTCGCGCCCGACGGGATTGGAGCCTACTTGGATGCCGGGAAGGGGC
GGCACTTTACGGACGCCCGTTGTGGGGACCCGTCCGCTGTCAGCAGCTTG
TGCCAGGTGACTTAACCCTTTTACCCCTGGGGTCCGTATGATCATAGGGG
TTTAGTGTGTAATCCAGTTTAGCAGGGGTAAAAGGGTTAGAGAATGTGCT
GTCGAGTAGGTAGGATGCTGCCCTCGGGAGTGATTCATATAAATTGTAAC
GAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGTATTGATGGTTA
TCCCATGTAAGGATTGAGTGTTCTTATATTGTTTAGTGATTATCAGATCA
AAGAATCAACAACTGCCCTCGGGAATTCTGTGGCAATATGACAGATCACA
AGCGAGCGGGAGAAGGGAGAGATTCAGTACTACTATAGCAGGTGTCCCCA
CTGTGCTTCAAAGCGTGTGGTTATGTTTTACCCGTGCGTGGTGAACTGCT
CACGTCGTGCGTGCTTACCGTAGTTGCCGAGTCCATTGGGAGTGCTGTAG
CAGTAGCAGGCGTCTGCCGCACCGCATGAGCAGGTACAGGTACCCGTACT
TACTTACCGTGCGTCTAAAGCAGCGCTGCACGCCCGCGAGCGCAGCGTCA
TTTCGGTGGGCAGCTTTCGCCCCCCTGGCTACGTGGTCAAATTGGGGGCG
GCCTCTCGACGTATCCAATTTCTTCGAAGCATTGCCTGGAACAGCACGGG
GTGAGGTGCAGGCCACGTCACTAGTGACCTCAGCAGTGGCCCTTTCCTTA
TAGCTCGCCAGGGGACTTGTGCGGGGAAGGGGAGAAAAGGAGGAGGGGGA
GGTGGACTAAGTAGTTGAGTCGGAGTGCCTACTGTAGAGAGCTCTACGGC
TGCGTGGTCCCTCCATCCCACACCTAATATGGCTTGCCAGGGGCGGGAGG
GACTTTGCTCCGTCTCGGCAGAGGCGCGTGGTCAATGGTCTCGGGACTAC
GGCAAGCACAACGTGAGTACATATATATGTACCGCAGGCGTTCATAGCGC
TACATTGTTCTGTAACGTCTGTACTCGTACTCGAGTACGAAATACTCATT
TGTAGCTGAACTGTGCAGTGGTCATTTTGTGTGTGCTACTGCACTGTATA
ATGGATATCTACAGTATAGCTCTACTATACTGTACAGTTGTCATTTGTAG
CTTTACTGTACTGCGCAGTAGTCATTTGCAGGTGTACTGTGCGGTAGCCA
TTTGCAGATGTGCTGTACAGTGGAAATTTGTACTTCGAAGTAGATCTACA
AGTGCTTGTTTAGTTGAGTGGTTCAGGAATAGCCCGAAGGTCGCGGTTTC
GAATCCCCAGGGGGCCGCGAATGCATGCCGCATTGCACCTACTTGTACAG
TAGCGCCTCCCCTATCTCTGCACAAACACACACACACCCGTACTGCTCCC
CCCGTCCTGCTCCTCCTCCCCCCCGTCCCCCGGCTGTGCTTGCCAGGCGT
TGGAGCTCCTTCGCGGCACACGTGAGAGGGGCGGCGCAATCACTACCAAC
GGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3744660..3752812-

>mRNA_S-ischiensis_contig8.19764.1 ID=mRNA_S-ischiensis_contig8.19764.1|Name=mRNA_S-ischiensis_contig8.19764.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1746bp|location=Sequence derived from alignment at S-ischiensis_contig8:3744660..3752812- (Schizocladia ischiensis KU_0333)
ATGGCGGGAGCGGAGGCTGCCGCGGAAGGGGTAGGGGACGGCGCAGATGA
GGCAGCTCTACGTTTCTCCTCCTATTCGCTGCTGCAGATGGCGGGAGCGG
AGGCTGCCGCGGAAGGGGTAGGGGACGGCGCAGATGAGGCAGCTCTACGT
TTCTCCTCCTATTCGCTGCTGCAGGGTGGAAAAGACAACCCAGAGAGCCT
GGGGTTGCCCACCGGGGCCCTTTTTGCGCCCTTTGCGAATGTGAGCCCGG
CCCCGCCTCGTGTTCAGCGGCAGCCAGTCCTCTGCCTTGGGTGCTGGGCC
TACCCCAGCCCCTTCTGTGAGGTGGACCCGGCTTCCGGGGCCTGGACCTG
CTGCTTCTGCGGTCGGTCCAACCCGTGCTACACGGAGGACTTCATTGGCT
CCACGCCCGCCGCGCACCATGAGTCCTACCCAGGGTGGAAAAGACAACCC
AGAGAGCCTGGGGTTGCCCACCGGGGCCCTTTTTGCGCCCTTTGCGAATG
TGAGCCCGGCCCCGCCTCGTGTTCAGCGGCAGCCAGTCCTCTGCCTTGGG
TGCTGGGCCTACCCCAGCCCCTTCTGTGAGGTGGACCCGGCTTCCGGGGC
CTGGACCTGCTGCTTCTGCGGTCGGTCCAACCCGTGCTACACGGAGGACT
TCATTGGCTCCACGCCCGCCGCGCACCATGAGTCCTACCCAGAAATGTCT
TTCAAGGTGGTGGAGTATGCAGAGCAGTCCCTGACAGCGGTCATGAGAGG
TCTCTCCCTGGACAGCCCCGGCCTTGGCAGCGGCGGCGGTCATGGTGGTG
GCGCGGGCAGCAGTCGTGGCATTGGCAGCAGTGGGGGCGGCGGCGGCGGC
GGCGGGTGTGGGGCAGCCTATGTGTTCGTGGTGGATGGAAACATGCCTGA
GGTAGCGCTGGCCCAGCTTGCCGCCTCTGTGGCACAGAAATGTCTTTCAA
GGTGGTGGAGTATGCAGAGCAGTCCCTGACAGCGGTCATGAGAGGTCTCT
CCCTGGACAGCCCCGGCCTTGGCAGCGGCGGCGGTCATGGTGGTGGCGCG
GGCAGCAGTCGTGGCATTGGCAGCAGTGGGGGCGGCGGCGGCGGCGGCGG
GTGTGGGGCAGCCTATGTGTTCGTGGTGGATGGAAACATGCCTGAGGTAG
CGCTGGCCCAGCTTGCCGCCTCTGTGGCACAGGTACTACCTTCCCTGGAC
AACGACGCGGTGGTTGGCCTGGTGGCCTTCACAGGCGTGGTACTACCTTC
CCTGGACAACGACGCGGTGGTTGGCCTGGTGGCCTTCACAGGCGTGGTGT
CCGTATACCGCCTGGCCCAGCGGGGCGTGCTGGTGGCCGACACCCTTCCC
GGCCATGAGGCGCTCGCGCCCGACGGGATTGGAGCCTACTTGGATGCCGG
GAAGGGGCGGCACTTTACGGACGCCCGTTGTGGGGACCCGTCCGCTGTCA
GCAGCTTGTGCCAGGTGTCCGTATACCGCCTGGCCCAGCGGGGCGTGCTG
GTGGCCGACACCCTTCCCGGCCATGAGGCGCTCGCGCCCGACGGGATTGG
AGCCTACTTGGATGCCGGGAAGGGGCGGCACTTTACGGACGCCCGTTGTG
GGGACCCGTCCGCTGTCAGCAGCTTGTGCCAGGCGTTGGAGCTCCTTCGC
GGCACACGTGAGAGGGGCGGCGCAATCACTACCAACGGCGCGTTGGAGCT
CCTTCGCGGCACACGTGAGAGGGGCGGCGCAATCACTACCAACGGC
back to top