mRNA_S-ischiensis_contig8.19702.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19702.1
Unique NamemRNA_S-ischiensis_contig8.19702.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19702.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-7
Identity = 24/32 (75.00%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:  193 WAMGVLINVAGSVAINLGTNIMKLSHKMEKGE 288
            WA+G +IN++GS+AINLGTN+MKLSHKM+KGE
Sbjct:    5 WAIGTMINISGSIAINLGTNLMKLSHKMKKGE 36
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BLAST of mRNA_S-ischiensis_contig8.19702.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-7
Identity = 24/32 (75.00%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:  193 WAMGVLINVAGSVAINLGTNIMKLSHKMEKGE 288
            WA+G +IN++GS+AINLGTN+MKLSHKM+KGE
Sbjct:    5 WAIGAMINISGSIAINLGTNLMKLSHKMKKGE 36
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BLAST of mRNA_S-ischiensis_contig8.19702.1 vs. uniprot
Match: A0A0L0FCY9_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCY9_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 2.070e-6
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:  181 GVPPWAMGVLINVAGSVAINLGTNIMKLSHKMEKGEI 291
            GVPPW +G  +NV GS+AINLGTN++KLSH  +K E+
Sbjct:    2 GVPPWIIGATVNVVGSLAINLGTNVIKLSH--DKAEV 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6Y8_9PHAE1.330e-775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9H4_ECTSI1.360e-775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0FCY9_9EUKA2.070e-662.16Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3253393..3254669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size324
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19702.1prot_S-ischiensis_contig8.19702.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3253395..3254669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.292903-CDS-S-ischiensis_contig8:3253394..32534421622817263.292903-CDS-S-ischiensis_contig8:3253394..3253442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3253395..3253442 -
1695740979.0961359-CDS-S-ischiensis_contig8:3253394..32534421695740979.0961359-CDS-S-ischiensis_contig8:3253394..3253442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3253395..3253442 -
1622817263.3051898-CDS-S-ischiensis_contig8:3254171..32543451622817263.3051898-CDS-S-ischiensis_contig8:3254171..3254345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3254172..3254345 -
1695740979.112302-CDS-S-ischiensis_contig8:3254171..32543451695740979.112302-CDS-S-ischiensis_contig8:3254171..3254345Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3254172..3254345 -
1622817263.3175085-CDS-S-ischiensis_contig8:3254570..32546691622817263.3175085-CDS-S-ischiensis_contig8:3254570..3254669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3254571..3254669 -
1695740979.1287959-CDS-S-ischiensis_contig8:3254570..32546691695740979.1287959-CDS-S-ischiensis_contig8:3254570..3254669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3254571..3254669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19702.1

>prot_S-ischiensis_contig8.19702.1 ID=prot_S-ischiensis_contig8.19702.1|Name=mRNA_S-ischiensis_contig8.19702.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
SRCWTTVARCARRRQAKRLPLCRSSCLAALAFEAASSERSPENQGGVGPT
GPQPELMSGGGVPPWAMGVLINVAGSVAINLGTNIMKLSHKMEKGEITLP
LITGNTH
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mRNA from alignment at S-ischiensis_contig8:3253393..3254669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19702.1 ID=mRNA_S-ischiensis_contig8.19702.1|Name=mRNA_S-ischiensis_contig8.19702.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1277bp|location=Sequence derived from alignment at S-ischiensis_contig8:3253393..3254669- (Schizocladia ischiensis KU_0333)
TCTCGCTGCTGGACAACTGTCGCACGCTGCGCCCGGCGGAGGCAAGCAAA
GCGGCTTCCCTTATGCCGCTCCTCTTGTTTGGCGGCCTTGGCGTTTGAGG
TGAGTCCCGCTTCCCGCCCCAACAACCGAGAAATTTGGTCGCAACGCTTG
CCCCGGGCAGGTCGCGCGACAGATGCATGTCCGCGAAACGGGTGCCATGC
CCGAGCGCCTGCCGAGCGACTTCCTAGGCCTGCGGCACCGCAGGACATTG
GTTCGGCCCAGTGACCGCTCGGGGATTCGCACCTGCCGCGACGCCCACTC
TCGCGTGCAACTGACAACCAGCAGGCTGCTTCCAGTGAGAGGAGCCCCGA
GAATCAAGGAGGCGTCGGGCCCACGGGCCCGCAGCCCGAACTCATGAGTG
GCGGAGGTGTGCCACCGTGGGCTATGGGTGTGCTGATCAACGTGGCGGGG
TCTGTGGCCATCAATCTGGGCACCAACATAATGAAACTCAGCCACAAGGT
GCGCGCCGTGGGTGCTCTACGGCTTTGGCGCAGCACACCAGGGTGGTCCT
ATTCGCCAACTGAACATCCATCGTTCCGTGCGTATGTGTTGGTGTACTTC
TGGATTGCCGCGGCTTGGGGGGGTGTGCTTTTTCCGCCGACATGTTGTCT
CGCGAGCGTACAATACTTCCGGGCATGGCCATCTGCGTTGTTGTACCATG
CCCGGGGTGGGCATGGCCGCAGCTCTTGGCCATAGCCCCCTCGCACCCAC
ACCAGTGTGGCATGCATACTACGAGCGACAGCATCAGCGCTTCCCTCTGC
CTCAGTTCGGGGGTTGATCGCTTCTTTCAAGTTGATTGGGAGGACGCCGA
AATGCAGCGACGGTGCAGTGGCACCCGATGCCATCCTGGCAGTCCCTCCC
CGCATCCTTCTCTCGTCCTTTTGCGATATATCACCCCACACGTCCTCCCC
TCCCCCTCCGATTTTCCTTGTGCTTACAACAGTTGAGGCGATCATTTGCT
GCGTGGGCCGCATCTCTCCTCGTGGTTGCTTGTAAAATGCTGTGCAGGGC
TATTTTCTTCCACGCGAATACAGCCCCCCACCAGTGCTTCGAAACCGCCG
CAAGTACTTCGAAGTACAGTACTTGGAAGTACTATATTGCTTATCTTCCC
TTGGCTCTTCTCTCGTCCCATCCGCCGGCCCGACAAATCCACGTATGTCA
CGTCACGGCGATGTCCGCCCCATGCAGATGGAGAAGGGTGAGATCACGCT
CCCCTTGATCACGGGCAACACACACGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3253393..3254669-

>mRNA_S-ischiensis_contig8.19702.1 ID=mRNA_S-ischiensis_contig8.19702.1|Name=mRNA_S-ischiensis_contig8.19702.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig8:3253393..3254669- (Schizocladia ischiensis KU_0333)
TCTCGCTGCTGGACAACTGTCGCACGCTGCGCCCGGCGGAGGCAAGCAAA
GCGGCTTCCCTTATGCCGCTCCTCTTGTTTGGCGGCCTTGGCGTTTGAGT
CTCGCTGCTGGACAACTGTCGCACGCTGCGCCCGGCGGAGGCAAGCAAAG
CGGCTTCCCTTATGCCGCTCCTCTTGTTTGGCGGCCTTGGCGTTTGAGGC
TGCTTCCAGTGAGAGGAGCCCCGAGAATCAAGGAGGCGTCGGGCCCACGG
GCCCGCAGCCCGAACTCATGAGTGGCGGAGGTGTGCCACCGTGGGCTATG
GGTGTGCTGATCAACGTGGCGGGGTCTGTGGCCATCAATCTGGGCACCAA
CATAATGAAACTCAGCCACAAGGCTGCTTCCAGTGAGAGGAGCCCCGAGA
ATCAAGGAGGCGTCGGGCCCACGGGCCCGCAGCCCGAACTCATGAGTGGC
GGAGGTGTGCCACCGTGGGCTATGGGTGTGCTGATCAACGTGGCGGGGTC
TGTGGCCATCAATCTGGGCACCAACATAATGAAACTCAGCCACAAGATGG
AGAAGGGTGAGATCACGCTCCCCTTGATCACGGGCAACACACACATGGAG
AAGGGTGAGATCACGCTCCCCTTGATCACGGGCAACACACAC
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