mRNA_S-ischiensis_contig8.19700.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19700.1
Unique NamemRNA_S-ischiensis_contig8.19700.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19700.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.880e-7
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  301 LEAGDEEIDWDHCRMLSFGFFPSVTTDQDM 390
            +EAGDEEIDWDH RMLS GFFPS++TDQD+
Sbjct:  623 MEAGDEEIDWDHTRMLSIGFFPSISTDQDV 652
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9H4_ECTSI4.880e-780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3244692..3246581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMagnesium transporter NIPA
Ec32 orthologEc-28_000930.3
Exons3
Model size548
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19700.1prot_S-ischiensis_contig8.19700.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3244692..3246581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.2398813-CDS-S-ischiensis_contig8:3244691..32448531622817263.2398813-CDS-S-ischiensis_contig8:3244691..3244853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3244692..3244853 -
1695740979.0487883-CDS-S-ischiensis_contig8:3244691..32448531695740979.0487883-CDS-S-ischiensis_contig8:3244691..3244853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3244692..3244853 -
1622817263.25198-CDS-S-ischiensis_contig8:3245585..32458721622817263.25198-CDS-S-ischiensis_contig8:3245585..3245872Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3245586..3245872 -
1695740979.0640457-CDS-S-ischiensis_contig8:3245585..32458721695740979.0640457-CDS-S-ischiensis_contig8:3245585..3245872Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3245586..3245872 -
1622817263.2633767-CDS-S-ischiensis_contig8:3246484..32465811622817263.2633767-CDS-S-ischiensis_contig8:3246484..3246581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3246485..3246581 -
1695740979.0802007-CDS-S-ischiensis_contig8:3246484..32465811695740979.0802007-CDS-S-ischiensis_contig8:3246484..3246581Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3246485..3246581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19700.1

>prot_S-ischiensis_contig8.19700.1 ID=prot_S-ischiensis_contig8.19700.1|Name=mRNA_S-ischiensis_contig8.19700.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
AGEDGGGGGAGDLQSDMQQDLQRMLRLEDSSSEPASSRCVSRAAVGDDAG
LATEAVTESVLAGGGLEMVELEERGRAGAEGRGPLPPPPAAMLPSPPPPD
LEAGDEEIDWDHCRMLSFGFFPSVTTDQDMDLLIHPFDGMEADRVVRRLG
SWCHDGGDATAGPASPSSYFSDGETNGTSDVL
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mRNA from alignment at S-ischiensis_contig8:3244692..3246581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19700.1 ID=mRNA_S-ischiensis_contig8.19700.1|Name=mRNA_S-ischiensis_contig8.19700.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1890bp|location=Sequence derived from alignment at S-ischiensis_contig8:3244692..3246581- (Schizocladia ischiensis KU_0333)
GCGGGGGAGGACGGCGGCGGCGGCGGCGCCGGCGATCTGCAGAGTGACAT
GCAGCAGGACCTGCAGCGTATGCTCCGGCTGGAGGATTCGTCGTCGGGTG
AGGGGAGCTTGTGTGTGTGTGAGCGTGACATGACTGACCTCGGCGGGCTG
TCTGTCTGTCTGTCTGTCTGTCTCTCTCTATATATCTATCAATCTATCTC
TCCCCCTCCCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTCTCTGTGTCCC
CCTCTCTTGGGGGCACCTGCACTACGTCCTCGCCTTTCGCATGTGCTGTT
GCGCTTGCTTTGGCGTAAGAGTGTGCTGCTGGGTGACTGGTATTTCTTGT
GTCTGTGTGTGTGTGTGTGTCTGCCTGTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTGTGTGTGTGTGTGAGAGAGAGAGATCTATCGGGGGGGGTG
GTTGTCCCTCCGTTTGTGCATGCCCGCGAGCTATCCCCACCCCGCCGCCC
CTCTTCCCTGCTTCTTCCCCTCCTGCGGGTTGTGCCTGCGCCAAATCGCC
CCCCCCTCCCTCGTTTCCTGTTCTTTGATGTGATAGTCACTAATGCGAGA
ACACTCCATTCTTAAATGGGATACCCACTAGTCCGAGAACACTCAACCTC
AAACACGTGCGATTGTACCTCGCTACAATTTTTACGAATCACCCCCCGTT
GCCAAACAGAGCCAGCCTCCTCGCGGTGTGTAAGCCGAGCAGCCGTGGGA
GACGATGCCGGCCTGGCCACTGAGGCAGTTACGGAATCGGTCTTGGCCGG
GGGGGGGCTGGAAATGGTGGAGCTAGAGGAACGGGGCCGGGCCGGGGCTG
AGGGGAGGGGTCCGCTGCCGCCGCCACCGGCGGCGATGTTGCCGTCGCCG
CCGCCGCCGGACCTGGAAGCGGGGGACGAGGAGATTGACTGGGACCACTG
CCGCATGCTCAGCTTTGGCTTCTTCCCGAGCGTGACCACAGATCAGGTGG
GTGATTGTTGCTTTGGTAGGTGTGTGTGTCTGTGTGTGTGTGTGCATGTG
TGCACGCGCGTCTGTGTGGGTTTCGCAGATCAGGTTGGTGATTCTTGTTT
TGGTAGTGTGTGTCGATATGTGTGTGTGGTGTGTGTGCGTGTGTGTGTGT
TTTGGGAGACCCTGGAGGTGCTTGGCTTGGTTGTGTGTGTGTGCGTGCGT
GTGTGCGTGTGTGTGCTTATTTTTTTTGTACCTACAAGTACTGCTCCGTC
TCGATGGAGGCGCGTGGTCAATGGTCTCGGGACTTCGGCAAGCACGATGT
GAGTGCATACATACTTGCAAGTATATACTCTGCTTGTTAAGTACAGTGCG
TGTTCGCCCCTGGAGTGACCCCAGCGGTCTCAGCAGGCAGATTGTTTTGG
AGAAGACGTGTGCGGAGGGCAAGAGAAGAGTGCTCTGGATGGCCAAGGAC
TCGGGCAAGGTGCCCCCTGTTGCGCGTGGGCATGGTGCAAGTATCCCATG
TGCTCACCTCGCTCGCGGCTCCGCGCAGCACCCGCCCCCTCTCCTATCCA
ATCATCCAACAATATCCTTCGCTGTCTCTCCTGGTTCCCCCCCGGTCCCC
TCACCACCCCACCCCTCAATTCCCGCCCCGACAACCCCCCCCACCCCCGC
CCCCGCCCCGCTTTCCCTCCACTACCCCGGCCCCCTCCCTCCTTCCACCT
CCGCCGCCGCCGCCGCCACCACCACCAGGACATGGACCTCCTCATCCACC
CCTTTGACGGCATGGAGGCCGACCGCGTGGTGCGGCGCCTGGGCTCTTGG
TGCCACGACGGCGGTGACGCCACCGCCGGCCCCGCCAGCCCCAGCAGCTA
TTTTTCCGACGGCGAGACCAACGGCACAAGTGACGTCCTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3244692..3246581-

>mRNA_S-ischiensis_contig8.19700.1 ID=mRNA_S-ischiensis_contig8.19700.1|Name=mRNA_S-ischiensis_contig8.19700.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig8:3244692..3246581- (Schizocladia ischiensis KU_0333)
GCGGGGGAGGACGGCGGCGGCGGCGGCGCCGGCGATCTGCAGAGTGACAT
GCAGCAGGACCTGCAGCGTATGCTCCGGCTGGAGGATTCGTCGTCGGGCG
GGGGAGGACGGCGGCGGCGGCGGCGCCGGCGATCTGCAGAGTGACATGCA
GCAGGACCTGCAGCGTATGCTCCGGCTGGAGGATTCGTCGTCGGAGCCAG
CCTCCTCGCGGTGTGTAAGCCGAGCAGCCGTGGGAGACGATGCCGGCCTG
GCCACTGAGGCAGTTACGGAATCGGTCTTGGCCGGGGGGGGGCTGGAAAT
GGTGGAGCTAGAGGAACGGGGCCGGGCCGGGGCTGAGGGGAGGGGTCCGC
TGCCGCCGCCACCGGCGGCGATGTTGCCGTCGCCGCCGCCGCCGGACCTG
GAAGCGGGGGACGAGGAGATTGACTGGGACCACTGCCGCATGCTCAGCTT
TGGCTTCTTCCCGAGCGTGACCACAGATCAGAGCCAGCCTCCTCGCGGTG
TGTAAGCCGAGCAGCCGTGGGAGACGATGCCGGCCTGGCCACTGAGGCAG
TTACGGAATCGGTCTTGGCCGGGGGGGGGCTGGAAATGGTGGAGCTAGAG
GAACGGGGCCGGGCCGGGGCTGAGGGGAGGGGTCCGCTGCCGCCGCCACC
GGCGGCGATGTTGCCGTCGCCGCCGCCGCCGGACCTGGAAGCGGGGGACG
AGGAGATTGACTGGGACCACTGCCGCATGCTCAGCTTTGGCTTCTTCCCG
AGCGTGACCACAGATCAGGACATGGACCTCCTCATCCACCCCTTTGACGG
CATGGAGGCCGACCGCGTGGTGCGGCGCCTGGGCTCTTGGTGCCACGACG
GCGGTGACGCCACCGCCGGCCCCGCCAGCCCCAGCAGCTATTTTTCCGAC
GGCGAGACCAACGGCACAAGTGACGTCCTTGACATGGACCTCCTCATCCA
CCCCTTTGACGGCATGGAGGCCGACCGCGTGGTGCGGCGCCTGGGCTCTT
GGTGCCACGACGGCGGTGACGCCACCGCCGGCCCCGCCAGCCCCAGCAGC
TATTTTTCCGACGGCGAGACCAACGGCACAAGTGACGTCCTT
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