|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 643 |
| Cds size | 627 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817243.9914107-CDS-S-ischiensis_contig78:354337..354436 | 1622817243.9914107-CDS-S-ischiensis_contig78:354337..354436 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 354338..354436 - |
| 1695740964.3812022-CDS-S-ischiensis_contig78:354337..354436 | 1695740964.3812022-CDS-S-ischiensis_contig78:354337..354436 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 354338..354436 - |
| 1622817244.0026042-CDS-S-ischiensis_contig78:354642..354908 | 1622817244.0026042-CDS-S-ischiensis_contig78:354642..354908 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 354643..354908 - |
| 1695740964.3916178-CDS-S-ischiensis_contig78:354642..354908 | 1695740964.3916178-CDS-S-ischiensis_contig78:354642..354908 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 354643..354908 - |
| 1622817244.014391-CDS-S-ischiensis_contig78:355776..355929 | 1622817244.014391-CDS-S-ischiensis_contig78:355776..355929 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 355777..355929 - |
| 1695740964.402699-CDS-S-ischiensis_contig78:355776..355929 | 1695740964.402699-CDS-S-ischiensis_contig78:355776..355929 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 355777..355929 - |
| 1622817244.0266666-CDS-S-ischiensis_contig78:356754..356863 | 1622817244.0266666-CDS-S-ischiensis_contig78:356754..356863 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 356755..356863 - |
| 1695740964.414113-CDS-S-ischiensis_contig78:356754..356863 | 1695740964.414113-CDS-S-ischiensis_contig78:356754..356863 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig78 356755..356863 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817244.0371234-UTR-S-ischiensis_contig78:356863..356879 | 1622817244.0371234-UTR-S-ischiensis_contig78:356863..356879 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig78 356864..356879 - |
| 1695740964.4251328-UTR-S-ischiensis_contig78:356863..356879 | 1695740964.4251328-UTR-S-ischiensis_contig78:356863..356879 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig78 356864..356879 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig78.19088.1 >prot_S-ischiensis_contig78.19088.1 ID=prot_S-ischiensis_contig78.19088.1|Name=mRNA_S-ischiensis_contig78.19088.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=209bp
MSATMPSSVVIEALTGMAEALQEQGRLAEAREIWQEVSERDAALFGASHP
YAACSQLSVAGLCGRLGDVEQAEGLYRQAEATLARASGLGIHPQLPTALA
NHARLLVEQSRWHEAEALLRGALARWESLGMHGHPPHVGVVALNGLGCCL
AMRGEPDLAEPVLRRALRVCKLQASEGGDVTTADTLHNLSLVLGLVGDTD
GEEEGGRGT back to topmRNA from alignment at S-ischiensis_contig78:354338..356879- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig78.19088.1 ID=mRNA_S-ischiensis_contig78.19088.1|Name=mRNA_S-ischiensis_contig78.19088.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2542bp|location=Sequence derived from alignment at S-ischiensis_contig78:354338..356879- (Schizocladia ischiensis KU_0333)
TTGGGTGCGCGGGTGGATGTCGGCCACCATGCCGTCGTCCGTGGTGATTG
AGGCGCTGACGGGTATGGCAGAGGCGTTGCAGGAGCAAGGGCGGCTGGCC
GAGGCCCGGGAGATTTGGCAGGAGGGTGAGTGAGCTACGGAGGTCAGAGG
TAGCGTCTGTGCTGGGGACGGCGAGCGCCTTTTTTTTGGGGGGGGGGGTG
TGGCTGTTACATGCGCGACGGGGGGAGAGAGAGAGAGAGAGGGGGGGGGA
GAGGGAGAGGGACAGGGAGAGGAGAGGAGAGAGGGGAGGGGGCGGCAGAG
GGCCCCGAAGCACGCCCTCATGGCAGTGATGGAACATCTAAACAAATCAA
CCTATTTATCGATAGTACTGATCTATTTTGAGTGGTTGATAGGCGGCGAG
TTCCAGGCCCCGTGCCAAAAGGCTCATCCCGAAAACAGGACTCAACGAAG
CCCTTCTTCCCCTCGCAGGGCAAAAAGAAAACAAAAAATAAAGAAGGAAA
GAGACTGATGTATATATCTCTCGATAGTCAATAGTCGATAGTTTGACTCA
CACTAAGTCCCACGAGTAGTTGCTTCCCGAAGTAATAGCACCACCCACAG
AATCAGTCGAGCCCCATAACTATCTACTGATCGATATTCCCATCACTCCC
ACAGCTGCTGCCCCTGGGTCCCCCCCCTCGCTGGCCCTGGCCCGCCACCA
CGGGCCGCCGCCCCAACGGCTCTACTTTTCAATGTACTTCGTACAGTTTG
TGTCTGTTGAAGAATAGTGGCGATTACTATCAGTCCGTGGCAGTGACTGT
CGCCGTCTCAAGCCTATCAACCACCCAAAGCCCCACCAGCCCTAGTCTGC
GCCTCACCCGCCCATGGCTACCTGTTAACACCTCTTCTTTGCTCCACAAA
CCTCCGGTTTCGTCCGCCCCGGCGGGTCTACTTTTTCAATGTACCTACAG
TTTCGGAGCGAGATGCTGCGCTCTTCGGCGCCAGCCACCCTTACGCGGCC
TGCTCGCAGCTGAGCGTTGCGGGACTGTGCGGGCGCCTCGGGGACGTGGA
GCAAGCGGAGGGGCTCTATCGACAGGCCGAGGCGACGTTGGCCCGCGCCT
CAGGTAAATAGGAAGGGCTGGGCTGCTGTGTGTGTGCGTTTGGCTGTTGC
TGTGTCGTGTTGTTGTGTGCGCCTGTGCAGCAGCGCAGGGAGATGCTCTC
GGAGAAGTTTAGCGTGCTGTACTGTACTGTGCTGTACTGTGCTGTGCTGT
GCTATGCTGTACCGTGCCGTACCGTACTGTACTGTACTGCACTGTACTGT
CCTTTGAAGTGCTCACGTACCGCTGCTAGCTGTACTACTTCCAAGCACTC
GGTGCTACGAAGGACATGTACAATCAGTACAGTCACTGTGCTTGGAAGCA
CTGCTGCACCGCTGCTAGCTGTACTACTTCCAAGCACTCGGTGCTACTGT
ACAGTGTACTGTACTCGTACGAGTACAGCTGCTGCGGTACGTACTGCTAG
TGCTGCTACTCTTACTACTACTGTACTACGAGGAGTGTCAAATACAAACA
CTGCTTCGAAGTACTACTGTAGCAGTCATGTGTCAAATACGCGCTGTGAA
GTCCTCGTGCATGTGTCGCATTGGAAGGCGCCGCCTTGTCTCACCCCCCC
CCCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCC
TCCCTCCCCTCCCGTCCCCTCCCCTCCCTCCCCTCCCCCCCTCCCTCCCC
TCCCTCCCCTCCCCTCCCTTCCCCTCCCCTCGCCTCCCCTCCCTCCCCTC
TCCTCCCCTTCCCTCCCCCCCTCCCGATCCCACCCAGGGTTGGCACTTAA
CCCCTAACTGGTGCCCTTTTAGGCCCTTAGTTAGAGGCAATCAGGGGTAC
TGTATTTAGACCTAGAATGAAGGCTAATTAGGGCCTAATTAACCTCTAGC
TGCCAACCCTGATCCCACCAGGCCTGGGCATCCACCCGCAGCTGCCTACC
GCCCTGGCGAACCACGCACGCCTCTTGGTGGAGCAGTCCCGCTGGCACGA
GGCCGAGGCACTGCTGCGGGGGGCGCTGGCACGCTGGGAGAGCCTGGGCA
TGCATGGCCACCCCCCGCACGTGGGCGTGGTGGCGCTGAACGGGCTGGGG
TGCTGCCTGGCTATGCGGGGGGAGCCGGACCTGGCGGAGCCCGTGCTGAG
GAGGGCGCTGCGGGTGTGCAAGCTGCAGGCCTCCGAGGTGTGTGTGTGTG
TGTGTGTGTGTACTCAAGTTGGACAGGGGACACCCCGTCCTGTGCATGCC
ACCGACCGTTGACCCCTACCGCGCCTGGTGCACTTCCGGGCCTGACGGCA
AACTGCCACACTGCATCAAGAAAGAATGCCCCCTCCCACCGATGTTGAGT
GTATCCATCCCTACCCCCTGCCCGGGGGTGCTGTGTTCGTCAGGGTGGAG
ATGTCACCACGGCAGACACCCTGCACAACCTGTCCCTGGTGCTGGGGCTG
GTGGGCGATACTGACGGCGAGGAGGAAGGCGGCAGAGGGACC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig78:354338..356879- >mRNA_S-ischiensis_contig78.19088.1 ID=mRNA_S-ischiensis_contig78.19088.1|Name=mRNA_S-ischiensis_contig78.19088.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1254bp|location=Sequence derived from alignment at S-ischiensis_contig78:354338..356879- (Schizocladia ischiensis KU_0333)
ATGTCGGCCACCATGCCGTCGTCCGTGGTGATTGAGGCGCTGACGGGTAT
GGCAGAGGCGTTGCAGGAGCAAGGGCGGCTGGCCGAGGCCCGGGAGATTT
GGCAGGAGGATGTCGGCCACCATGCCGTCGTCCGTGGTGATTGAGGCGCT
GACGGGTATGGCAGAGGCGTTGCAGGAGCAAGGGCGGCTGGCCGAGGCCC
GGGAGATTTGGCAGGAGGTTTCGGAGCGAGATGCTGCGCTCTTCGGCGCC
AGCCACCCTTACGCGGCCTGCTCGCAGCTGAGCGTTGCGGGACTGTGCGG
GCGCCTCGGGGACGTGGAGCAAGCGGAGGGGCTCTATCGACAGGCCGAGG
CGACGTTGGCCCGCGCCTCAGTTTCGGAGCGAGATGCTGCGCTCTTCGGC
GCCAGCCACCCTTACGCGGCCTGCTCGCAGCTGAGCGTTGCGGGACTGTG
CGGGCGCCTCGGGGACGTGGAGCAAGCGGAGGGGCTCTATCGACAGGCCG
AGGCGACGTTGGCCCGCGCCTCAGGCCTGGGCATCCACCCGCAGCTGCCT
ACCGCCCTGGCGAACCACGCACGCCTCTTGGTGGAGCAGTCCCGCTGGCA
CGAGGCCGAGGCACTGCTGCGGGGGGCGCTGGCACGCTGGGAGAGCCTGG
GCATGCATGGCCACCCCCCGCACGTGGGCGTGGTGGCGCTGAACGGGCTG
GGGTGCTGCCTGGCTATGCGGGGGGAGCCGGACCTGGCGGAGCCCGTGCT
GAGGAGGGCGCTGCGGGTGTGCAAGCTGCAGGCCTCCGAGGCCTGGGCAT
CCACCCGCAGCTGCCTACCGCCCTGGCGAACCACGCACGCCTCTTGGTGG
AGCAGTCCCGCTGGCACGAGGCCGAGGCACTGCTGCGGGGGGCGCTGGCA
CGCTGGGAGAGCCTGGGCATGCATGGCCACCCCCCGCACGTGGGCGTGGT
GGCGCTGAACGGGCTGGGGTGCTGCCTGGCTATGCGGGGGGAGCCGGACC
TGGCGGAGCCCGTGCTGAGGAGGGCGCTGCGGGTGTGCAAGCTGCAGGCC
TCCGAGGGTGGAGATGTCACCACGGCAGACACCCTGCACAACCTGTCCCT
GGTGCTGGGGCTGGTGGGCGATACTGACGGCGAGGAGGAAGGCGGCAGAG
GGACCGGTGGAGATGTCACCACGGCAGACACCCTGCACAACCTGTCCCTG
GTGCTGGGGCTGGTGGGCGATACTGACGGCGAGGAGGAAGGCGGCAGAGG
GACC back to top
|