mRNA_S-ischiensis_contig107.1892.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1892.1
Unique NamemRNA_S-ischiensis_contig107.1892.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 8.740e-83
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRFLLLQNRQGKTRLSKWWIPL+DE+EKVRIENEVHRLV+TRDRKYTNF+EYG YK+IYRRYAGLFFT GMDVNDNELL LET+HLFVELLESYFSNVCELDIVFNFNKVYNILDE+ILSGEVEESSKREILDRIRE+EKLD
Sbjct:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.670e-77
Identity = 123/142 (86.62%), Postives = 138/142 (97.18%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRFLLLQNRQGKTRLSKW+IPLYDEQEK +IEN+VHRLV++RDRKYTNFIEY +YK+IYRRYAGLFFTLG+DVNDNELL LET+HLFVELL+SYFSNVCELDIVFNFNKVYNILDE+ILSGEV+ES+K EILDR+RELEKL+
Sbjct:    2 IRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.150e-65
Identity = 109/142 (76.76%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRF LLQNRQGKTRLSKW++P  D+QEK R+ENE+HRLV++RD K+TNFIE+ +YK+IYRRYAGLFF LG+D++ NELL LETIHLFVELL+  FSNVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:   56 IRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 197          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: H3GDE6_PHYRM (AP complex subunit sigma n=27 Tax=Oomycota TaxID=4762 RepID=H3GDE6_PHYRM)

HSP 1 Score: 218 bits (556), Expect = 4.110e-65
Identity = 108/142 (76.06%), Postives = 128/142 (90.14%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRF LLQNRQGKTRLSKW++P  ++QEK R+E E+HRLV+ RD K+TNFIE+ NYK+IYRRYAGLFF LG+D+  NELLGLETIHLFVELL+  F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:    2 IRFFLLQNRQGKTRLSKWYVPPPEDQEKARLEAEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLAANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 4.270e-65
Identity = 108/142 (76.06%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRF L+QNRQGKTRLSKW++P  D+QEK R+E+E+HRLVI+RD K+TNFIE+ +YK+IYRRYAGLFF LG+D++ NELL LETIHLFVELL+  FSNVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:   34 IRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A662WD62_9STRA (AP complex subunit sigma (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WD62_9STRA)

HSP 1 Score: 219 bits (557), Expect = 6.680e-65
Identity = 108/143 (75.52%), Postives = 128/143 (89.51%), Query Frame = 1
Query:    1 QIRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            QIRF LLQNRQGKTRLSKW++P  ++QEK R+E E+HRLV+ RD K+TNFIE+ NYK+IYRRYAGLFF LG+D+  NELL LETIHLFVELL+  F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:   26 QIRFFLLQNRQGKTRLSKWYVPPPEDQEKARLEAEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLTANELLSLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 168          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 216 bits (550), Expect = 3.050e-64
Identity = 110/143 (76.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query:    1 QIRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            QIRF LLQNRQGKTRLSKW+ P     EK RIE EVHRLV +RD+KYTNFIEY NYK+IYRRYAGLFFT+ +DV DNEL  LE+IHLFVELL+SYF+NVCELDIVFNFNKVY+ILDEY+L+GE+EE+SK+EILDR++ LEKLD
Sbjct:    1 QIRFFLLQNRQGKTRLSKWYDPP-PPSEKARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.720e-64
Identity = 105/140 (75.00%), Postives = 128/140 (91.43%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEK 423
            IRF LLQNRQGKTRLSKW++    ++EK R+E E+HRLV+ RDRKYT+FIE+ NYK++YRRYAGLFFT+G+DVNDNELL LETIHLFVELL+ YFSNVCELDIVFNFNKVY ILDE+IL+GE++E+SK+EIL+RI+E+EK
Sbjct:    5 IRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.050e-63
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIPLYD-------EQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRF LLQNRQGKTRLSKW++P          E EK RIE+EVHRLV +RD+KYTNFIEY +YK+IYRRYAGLFFT+ +D+ DNEL  LETIHLFVELL+SYFSNVCELDIVFNFN+VY ILDEYIL+GE+EE+SK+EILDR++ LEKL+
Sbjct:    2 IRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 214 bits (544), Expect = 3.360e-63
Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 1
Query:    4 IRFLLLQNRQGKTRLSKWWIP----------LYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
            IRF LLQNRQGKTRLSKW++P             E EK RIE EVHRLV +RD+KYTNFIEY NYK+IYRRYAGLFFT+ +DV DNEL  LETIHLFVELL+SYFSNVCELDIVFNFNKVY+ILDEY+L+GE+EE+SKREILDR++ +EK++
Sbjct:    2 IRFFLLQNRQGKTRLSKWYVPPPTSTNGTHHSSPEAEKTRIEAEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI8.740e-8392.25AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA5.670e-7786.62AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
F0W4M2_9STRA1.150e-6576.76AP-2 complex subunit sigma n=1 Tax=Albugo laibachi... [more]
H3GDE6_PHYRM4.110e-6576.06AP complex subunit sigma n=27 Tax=Oomycota TaxID=4... [more]
A0A024GMS7_9STRA4.270e-6576.06AP complex subunit sigma n=1 Tax=Albugo candida Ta... [more]
A0A662WD62_9STRA6.680e-6575.52AP complex subunit sigma (Fragment) n=1 Tax=Nothop... [more]
B8C940_THAPS3.050e-6476.92AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A7S2CS13_9STRA3.720e-6475.00AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A7S0FJC4_9STRA3.050e-6373.15AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A7S4IKL5_9STRA3.360e-6372.37AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:18000..22094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D8LQX3
Preferred nameap2s1
KEGG koko:K11481,ko:K11827
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
EggNOG free text desc.protein transporter activity
EggNOG OGsCOG5030@1,KOG0935@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size1757
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1892.1prot_S-ischiensis_contig107.1892.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 19096..20769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.2944548-UTR-S-ischiensis_contig107:17999..181551622815570.2944548-UTR-S-ischiensis_contig107:17999..18155Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 18000..18155 +
1695739776.6221397-UTR-S-ischiensis_contig107:17999..181551695739776.6221397-UTR-S-ischiensis_contig107:17999..18155Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 18000..18155 +
1622815570.3077755-UTR-S-ischiensis_contig107:19038..190951622815570.3077755-UTR-S-ischiensis_contig107:19038..19095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 19039..19095 +
1695739776.633925-UTR-S-ischiensis_contig107:19038..190951695739776.633925-UTR-S-ischiensis_contig107:19038..19095Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 19039..19095 +
1622815570.338739-UTR-S-ischiensis_contig107:20769..220941622815570.338739-UTR-S-ischiensis_contig107:20769..22094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 20770..22094 +
1695739776.6619503-UTR-S-ischiensis_contig107:20769..220941695739776.6619503-UTR-S-ischiensis_contig107:20769..22094Schizocladia ischiensis KU_0333UTRS-ischiensis_contig107 20770..22094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.3187654-CDS-S-ischiensis_contig107:19095..192121622815570.3187654-CDS-S-ischiensis_contig107:19095..19212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 19096..19212 +
1695739776.6431715-CDS-S-ischiensis_contig107:19095..192121695739776.6431715-CDS-S-ischiensis_contig107:19095..19212Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 19096..19212 +
1622815570.329245-CDS-S-ischiensis_contig107:20667..207691622815570.329245-CDS-S-ischiensis_contig107:20667..20769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 20668..20769 +
1695739776.6522613-CDS-S-ischiensis_contig107:20667..207691695739776.6522613-CDS-S-ischiensis_contig107:20667..20769Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 20668..20769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1892.1

>prot_S-ischiensis_contig107.1892.1 ID=prot_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=73bp
MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILS
GEVEESSKREILDRIRELEKLD*
back to top

mRNA from alignment at S-ischiensis_contig107:18000..22094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1892.1 ID=mRNA_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4095bp|location=Sequence derived from alignment at S-ischiensis_contig107:18000..22094+ (Schizocladia ischiensis KU_0333)
CAGATCCGCTTCCTGCTGTTGCAGAACCGGCAGGGGAAGACGCGTCTCTC CAAATGGTGGATACCCCTGTACGATGAGCAGGAGAAGGTGCGAATCGAGA ATGAGGTGCACCGCCTCGTAATCACCAGGGATCGCAAGTACACCAACTTT ATCGAGGTGCGTGGGTCCGCGGTGTACACGGCACGTGATGCATATACATT GAAACGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCGCACTAGT AGTTGTCCCATTTAGGAATTGAGTGTTCTCGTATTAATGATCACATAAGG AACTAAGAGCAAGGAGGGGGGGGGGGGAAGAGTGTGCACACGGCCTGTCG GGAAGTGAGTGGCACCCTGCAACCTGTTGGGCAGGGCTTTCGCTAAATGG GCGGCCGCCTGCCGCACCAAACGGACTTGCCAAGTTCGCTTGCTTGGAGT TTTGAGGGCCGCCGTTGAATTTCGCCGCAGGCTTTGTGCAAAACCCAACC GAAGTTGGCCTGACTGGCCATTGCAGCGCGGCAGCTGTGCCAGCATTTGC GCAGGGGCACACTGCACGTGAGTACAGTGTGTGTATTTTGCCATCCATGA GTCACCACGGCCTAGTTGGGACGCGAGAGTCATGGCTAAATAGCTACTCC TGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGCAAAGTTGA ATGTGTGTGCGTGTGTGTGTGTTGCACAGTACGGCAACTACAAGGTGATC TACCGGCGATACGCTGCCTGTGCATATACATGCAGACCACAACCCTTCTG CACTCAATGTCGTTGAATGTGTGTATGTGTGCGTGTTGCGCAGTACGGCA ACTACAAGGTGATCAAACGGCGATGCACACTGACTTTGGTTGAATGTGTG GGTGTTGTATAGTACGGCAACGACACGGTGAGATCTACCGGCGACACTCA CTGTTGTAGTTAAATGTACGGCAACTACAAGGTGATGTACCGGCGAGACG CACTGATTATAGTTGAATGTGTATGTTGTACTTGTACAGTACGGCAACTA CAAGGTGATCTACCGGCGATATGCGGGTCTGTTCTTCACCCTGGGCATGG ACGTGAACGACAACGAGCTGCTGGGCCTGGAGACAATCCACCTGTTTGTG GAGTTGCTCGAGTCCTACTTCTCCAACGTATGCGAGCTGGACATTGTCTT CAACTTCAATAAGGTGATTTCTTTTTTACTTATTACGAGTATATATATCA CCTGTTTGTGGAGTTGCTGTAGTCATACTTCTCCAACGTATGCGAGCTGG ACATCGTCTTCAATGTCAATACGGTGACACCATTGCTGCCTATTGTTTCA TTCAACTTCAAGAAGGTGATATTGAGCACGGTAGAGGTTGCAAGTGGGAG TGGGCGCGTTTGATTCCCCAATTTTGTACGGTATATTTGGAGTTTCTCTT TTGATGTACCCTTGGAGGACTACAGTCATACTACAGTAGCTCTACAGTAT CTACTCTGTACTGTACGTACAGCACATACAGTACTACCGTAGTAGTAGTA CTTTGAAGTACAGCACTATACAGTAGTATCGCACTCTATGTGATACTGCC TACTCTCTACTGTACGTACAGCACATACAGTACTGGTAGTAGTACTTTGA AGTACAGTACTGTACAGTAGTATCGCACTACTATGTCATACTGCGCTACG CGCTTGACATTGGCATTGAGAGGTGCATTAGAGAGGGCACACTTTTTTGT GTACAGTAGGCTGCTGCATGGTGTTGGCGCTCCCGTGAATGGGCGCGTTG TTGGATATTTTTCCTGGGCGTGTGTTGTCATGTGGAAGTTTTTAACCGTA CTGTGTATCTACTGTGTGGTAGGTGTACAACATGTTTTGCTCACCGTACT GTGTATGTACTGTATGATGGGTGTACAACAATATACCGTATTCGTCGGCT AGATGGACCCGCGGATGCTGGCGAAATCCGGGCCAATCAGATGCACCAGG TCTCAACGTCGGGGTCCAACTCCGGGTTGGACCGATGGGGGTTTCGTTAT GCGTGCAACGGGAGGTCCAAGTCAAACGCCGATCTACGTGTCGAGCGCTC ACAGACGCGCTCTTGGGGCACCAGGACTGCCAGCTGGGGCGGGCGGCATC TGCCCCTGGGCAGGATTGATGTGTGCTATCTGCCGGAGTCGGGAAGGGGG GTCTAGCTCACTGCGGGGGTCCAAAACACCGGCGGATCTCGGGAGAAATG GGAAAATTCGCTTTTCGGGGGGTCCACATCCACATTGGGTCCACCTCAAC GGACGGTCCATCTCTCCGACGAATACGGTACTAGCCGTACTGTGTGTATA CTGTATGGTAGGAGTACAACATTTTGCTAACCGTACTATAGATGTGCTGT ATGGTAGGTGTACAACATGTTACTAACCGTACTAGTGTATCTACTGTGTG GTAGGTGTACAACATGTTGCTAACCGTACTCTGTATCTACCGTATTGTAG GTGTACAACATGTTACTGACCGTACTGTGTATATACTGTATGGTACTGTA GGTGTACAACATGTTGCTAACCGTACTGTGTATATACTGTATGGTAGGTG TATACACTCATACTTCTGAAGTATATACTAATGTGTATCTACTGTATGTG TATTGTATGGTACTGTAGGTGTACAACATCCTGGACGAGTACATCCTCAG CGGGGAGGTGGAGGAGAGCAGCAAGCGGGAAATACTGGACCGCATACGCG AATTGGAGAAGCTGGACTGATCGATTGGTGATATCTACTTGTCTCACGTG CAAGGAAACGCAAGCAAGATCGCGCAACGTTCGGAGGACAATGGTACAGT GATGTGACGCTGTAATCTACTGCACAGCAAGATCGCTGCAACTTTCGGGG TGCTATGGTTCAGTGGTGTGACGCTGCTGCAAGCTACCGCACAGTAGTGC AGTTTGGTGCAGTTTACAGTAGTGTTCCGCCGCCGGGCAATGGCCCACTC CTGCCTCCTGCAGGACGTGGTACTGGGAATGGGAATGGATGGGAGGGAGG CACTGGATGGCGTGTGTAGCGGGTTTGCATACTTGTACAATGTAGACCGT CCCAGCATGGGATGCGTGCTGGCCTCTTGAACAACCCCAACCTCCGCTGG TGTCGTAGGGGTTTCGGCCGTTTCGCGCCGTCCTTGGGGGTTAGGTTGCA TTACAGTACGGTACTTGTACAGTAACAGTGACAGTGCTTGGGGGCGTACA GTGCAGTCTTGTACCGTGCATATTTTGACTGTACTGTACTGTACTGTACA CTGCACTGCACTGTACTGTAGTGCGGGGTATGATGTGCTTACGCGCTGAG TGTCAAGCTATCGCCGCATGTGCAATTTGTGTCGTGTTGGTTTTTGACTG CAGTACACTACTCACTGGCGGCACAGCTGTCTATCTTGTGCGTATTTTAT GTGTGTGTGCGAGCTATTGCGTGTCCGTTTTCAGGCCAGACACGCGGGAT AATCATCGCGCAGTCAGGCAGGACTTGCAATCAAGCACTTCCAAGTACTA TCAACTACTGCCAAGTACGTTCAAGTACTTCCAGGTACATCAAGTACTTC CGAGTATTCAAGTACTTCCAAGTACTTCCAAGTACTCGTAGAGCTCTAGG CGGAGAGGCCCACTGGGCTAGCGATTGGTGTCTGCAGTTACTTGAAGTAC CAGTTGCGCGGTTCCCTGAAGAGGGTGTGGAACCCGAACACACGTGGGGC TTCAAGTTCTTTTTTCCGCAGTTTGACCTGGTGTCCACTGTTTACAAACT GCCAAGGGGAGGAAGCCCGGCACGGGCGTGCCCCCTGGGAGGGCCACCGT CACAGCCAGGGGGGGTGGGAGGGTAACGGTCGCTTTTCATACAAAGCTGT AAAAAAAACAACGTGTCTGAACAGTACTGCAATCGTCGGAGAGATCTTGC CCCCCCATGCCAATTTTCGGTAGAACGTTTCTCGGCGAATACTGGTCAGA TTCGAGCAGGAAAACTCGGAACATCTCCCTCAGGATCTGGGGGAACTTTC TCGGGGGCTTTCGGAACAATCCAGGACCTGTCCGGCTAGAAACAT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig107:18000..22094+

>mRNA_S-ischiensis_contig107.1892.1 ID=mRNA_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=438bp|location=Sequence derived from alignment at S-ischiensis_contig107:18000..22094+ (Schizocladia ischiensis KU_0333)
ATGGACGTGAACGACAACGAGCTGCTGGGCCTGGAGACAATCCACCTGTT
TGTGGAGTTGCTCGAGTCCTACTTCTCCAACGTATGCGAGCTGGACATTG
TCTTCAACTTCAATAAGATGGACGTGAACGACAACGAGCTGCTGGGCCTG
GAGACAATCCACCTGTTTGTGGAGTTGCTCGAGTCCTACTTCTCCAACGT
ATGCGAGCTGGACATTGTCTTCAACTTCAATAAGGTGTACAACATCCTGG
ACGAGTACATCCTCAGCGGGGAGGTGGAGGAGAGCAGCAAGCGGGAAATA
CTGGACCGCATACGCGAATTGGAGAAGCTGGACTGAGTGTACAACATCCT
GGACGAGTACATCCTCAGCGGGGAGGTGGAGGAGAGCAGCAAGCGGGAAA
TACTGGACCGCATACGCGAATTGGAGAAGCTGGACTGA
back to top