prot_S-ischiensis_contig107.1892.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig107.1892.1
Unique Nameprot_S-ischiensis_contig107.1892.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length73
Homology
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.870e-39
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            MDVNDNELL LET+HLFVELLESYFSNVCELDIVFNFNKVYNILDE+ILSGEVEESSKREILDRIRE+EKLD
Sbjct:   72 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.520e-35
Identity = 62/72 (86.11%), Postives = 70/72 (97.22%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +DVNDNELL LET+HLFVELL+SYFSNVCELDIVFNFNKVYNILDE+ILSGEV+ES+K EILDR+RELEKL+
Sbjct:   72 VDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.230e-31
Identity = 56/70 (80.00%), Postives = 67/70 (95.71%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEK 70
            +DVNDNELL LETIHLFVELL+ YFSNVCELDIVFNFNKVY ILDE+IL+GE++E+SK+EIL+RI+E+EK
Sbjct:   75 IDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 114 bits (286), Expect = 3.790e-31
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +DV DNEL  LE+IHLFVELL+SYF+NVCELDIVFNFNKVY+ILDEY+L+GE+EE+SK+EILDR++ LEKLD
Sbjct:   71 VDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.760e-31
Identity = 56/72 (77.78%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +D+ DNEL  LETIHLFVELL+SYFSNVCELDIVFNFN+VY ILDEYIL+GE+EE+SK+EILDR++ LEKL+
Sbjct:   79 VDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.180e-31
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +DV DNEL  LETIHLFVELL+SYFSNVCELDIVFNFNKVY+ILDEY+L+GE+EE+SKREILDR++ +EK++
Sbjct:   82 VDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: H3GDE6_PHYRM (AP complex subunit sigma n=27 Tax=Oomycota TaxID=4762 RepID=H3GDE6_PHYRM)

HSP 1 Score: 114 bits (285), Expect = 5.530e-31
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +D+  NELLGLETIHLFVELL+  F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:   72 VDLAANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 143          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.350e-31
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +DV DNEL  LETIHLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+EE+SKREILDR++ LEK++
Sbjct:   82 VDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: G4YSL6_PHYSP (AP complex subunit sigma n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YSL6_PHYSP)

HSP 1 Score: 114 bits (285), Expect = 7.560e-31
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +D+  NELLGLETIHLFVELL+  F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:   83 VDLAANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 154          
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.350e-30
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 72
            +D++ NELL LETIHLFVELL+  FSNVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct:  104 VDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI6.870e-3994.44AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA1.520e-3586.11AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA2.230e-3180.00AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
B8C940_THAPS3.790e-3177.78AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A7S0FJC4_9STRA4.760e-3177.78AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A7S4IKL5_9STRA5.180e-3177.78AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]
H3GDE6_PHYRM5.530e-3179.17AP complex subunit sigma n=27 Tax=Oomycota TaxID=4... [more]
A0A7S3L6S1_9STRA7.350e-3177.78AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
G4YSL6_PHYSP7.560e-3179.17AP complex subunit sigma n=1 Tax=Phytophthora soja... [more]
A0A024GMS7_9STRA1.350e-3079.17AP complex subunit sigma n=1 Tax=Albugo candida Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..71
e-value: 3.5E-24
score: 85.3
NoneNo IPR availableGENE3D3.30.450.60coord: 1..72
e-value: 2.2E-25
score: 91.1
NoneNo IPR availablePANTHERPTHR11753:SF44AP-2 COMPLEX SUBUNIT SIGMAcoord: 2..72
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..72
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 2..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:19096..20769 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1892.1mRNA_S-ischiensis_contig107.1892.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig107 18000..22094 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig107.1892.1 ID=prot_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=73bp
MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILS
GEVEESSKREILDRIRELEKLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf