mRNA_S-ischiensis_contig107.1892.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI) HSP 1 Score: 264 bits (675), Expect = 8.740e-83 Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRFLLLQNRQGKTRLSKWWIPL+DE+EKVRIENEVHRLV+TRDRKYTNF+EYG YK+IYRRYAGLFFT GMDVNDNELL LET+HLFVELLESYFSNVCELDIVFNFNKVYNILDE+ILSGEVEESSKREILDRIRE+EKLD
Sbjct: 2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA) HSP 1 Score: 249 bits (636), Expect = 5.670e-77 Identity = 123/142 (86.62%), Postives = 138/142 (97.18%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRFLLLQNRQGKTRLSKW+IPLYDEQEK +IEN+VHRLV++RDRKYTNFIEY +YK+IYRRYAGLFFTLG+DVNDNELL LET+HLFVELL+SYFSNVCELDIVFNFNKVYNILDE+ILSGEV+ES+K EILDR+RELEKL+
Sbjct: 2 IRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA) HSP 1 Score: 222 bits (565), Expect = 1.150e-65 Identity = 109/142 (76.76%), Postives = 130/142 (91.55%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRF LLQNRQGKTRLSKW++P D+QEK R+ENE+HRLV++RD K+TNFIE+ +YK+IYRRYAGLFF LG+D++ NELL LETIHLFVELL+ FSNVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct: 56 IRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 197
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: H3GDE6_PHYRM (AP complex subunit sigma n=27 Tax=Oomycota TaxID=4762 RepID=H3GDE6_PHYRM) HSP 1 Score: 218 bits (556), Expect = 4.110e-65 Identity = 108/142 (76.06%), Postives = 128/142 (90.14%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRF LLQNRQGKTRLSKW++P ++QEK R+E E+HRLV+ RD K+TNFIE+ NYK+IYRRYAGLFF LG+D+ NELLGLETIHLFVELL+ F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct: 2 IRFFLLQNRQGKTRLSKWYVPPPEDQEKARLEAEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLAANELLGLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 143
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA) HSP 1 Score: 219 bits (559), Expect = 4.270e-65 Identity = 108/142 (76.06%), Postives = 130/142 (91.55%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRF L+QNRQGKTRLSKW++P D+QEK R+E+E+HRLVI+RD K+TNFIE+ +YK+IYRRYAGLFF LG+D++ NELL LETIHLFVELL+ FSNVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct: 34 IRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A662WD62_9STRA (AP complex subunit sigma (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WD62_9STRA) HSP 1 Score: 219 bits (557), Expect = 6.680e-65 Identity = 108/143 (75.52%), Postives = 128/143 (89.51%), Query Frame = 1
Query: 1 QIRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
QIRF LLQNRQGKTRLSKW++P ++QEK R+E E+HRLV+ RD K+TNFIE+ NYK+IYRRYAGLFF LG+D+ NELL LETIHLFVELL+ F+NVCELDIVFNFNKVY++LDEYIL GEV+E+SKRE+LDRIRELEKL+
Sbjct: 26 QIRFFLLQNRQGKTRLSKWYVPPPEDQEKARLEAEIHRLVVARDAKHTNFIEFRNYKLIYRRYAGLFFILGVDLTANELLSLETIHLFVELLDQQFANVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 168
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS) HSP 1 Score: 216 bits (550), Expect = 3.050e-64 Identity = 110/143 (76.92%), Postives = 127/143 (88.81%), Query Frame = 1
Query: 1 QIRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
QIRF LLQNRQGKTRLSKW+ P EK RIE EVHRLV +RD+KYTNFIEY NYK+IYRRYAGLFFT+ +DV DNEL LE+IHLFVELL+SYF+NVCELDIVFNFNKVY+ILDEY+L+GE+EE+SK+EILDR++ LEKLD
Sbjct: 1 QIRFFLLQNRQGKTRLSKWYDPP-PPSEKARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA) HSP 1 Score: 216 bits (550), Expect = 3.720e-64 Identity = 105/140 (75.00%), Postives = 128/140 (91.43%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEK 423
IRF LLQNRQGKTRLSKW++ ++EK R+E E+HRLV+ RDRKYT+FIE+ NYK++YRRYAGLFFT+G+DVNDNELL LETIHLFVELL+ YFSNVCELDIVFNFNKVY ILDE+IL+GE++E+SK+EIL+RI+E+EK
Sbjct: 5 IRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA) HSP 1 Score: 214 bits (544), Expect = 3.050e-63 Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLYD-------EQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRF LLQNRQGKTRLSKW++P E EK RIE+EVHRLV +RD+KYTNFIEY +YK+IYRRYAGLFFT+ +D+ DNEL LETIHLFVELL+SYFSNVCELDIVFNFN+VY ILDEYIL+GE+EE+SK+EILDR++ LEKL+
Sbjct: 2 IRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA) HSP 1 Score: 214 bits (544), Expect = 3.360e-63 Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIP----------LYDEQEKVRIENEVHRLVITRDRKYTNFIEYGNYKVIYRRYAGLFFTLGMDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSGEVEESSKREILDRIRELEKLD 429
IRF LLQNRQGKTRLSKW++P E EK RIE EVHRLV +RD+KYTNFIEY NYK+IYRRYAGLFFT+ +DV DNEL LETIHLFVELL+SYFSNVCELDIVFNFNKVY+ILDEY+L+GE+EE+SKREILDR++ +EK++
Sbjct: 2 IRFFLLQNRQGKTRLSKWYVPPPTSTNGTHHSSPEAEKTRIEAEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIEETSKREILDRVKFMEKME 153 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig107.1892.1 >prot_S-ischiensis_contig107.1892.1 ID=prot_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=73bp MDVNDNELLGLETIHLFVELLESYFSNVCELDIVFNFNKVYNILDEYILSback to top mRNA from alignment at S-ischiensis_contig107:18000..22094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig107.1892.1 ID=mRNA_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4095bp|location=Sequence derived from alignment at S-ischiensis_contig107:18000..22094+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig107:18000..22094+ >mRNA_S-ischiensis_contig107.1892.1 ID=mRNA_S-ischiensis_contig107.1892.1|Name=mRNA_S-ischiensis_contig107.1892.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=438bp|location=Sequence derived from alignment at S-ischiensis_contig107:18000..22094+ (Schizocladia ischiensis KU_0333)back to top |