mRNA_S-ischiensis_contig68.17691.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig68.17691.1
Unique NamemRNA_S-ischiensis_contig68.17691.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A836CJ86_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ86_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.940e-20
Identity = 84/323 (26.01%), Postives = 139/323 (43.03%), Query Frame = 3 
Query:  153 VFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFANTA*SHMIKKVYKELMIMGLISFGSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQEWAT--GDDEAVADSSXXXXXXXXXXXXXXXXXXXXXXXXXXX----TYGDEGGSTGMEAFTINGYLLLLGTVAFYFLARGSELALPRKAGCTDTASYKAVL 1103
            VFGL ++LD  + +   V V+  T++ E I+  L+ +   T    M+ K+YKELMI+GL+S G                 + I     +  HG      E +   + +           R+  L + VP      +            V    SRLR SMEF IL+  F+  +++P +FDF  YMR ++D  IL  ++++ VTW+++I + L N  R    +     GDD+ +  +                                 Y +   ++G+ +F   G++L+L  V ++F+ RG EL L R+AG      Y+ VL
Sbjct:    4 VFGLASHLDIAISSLALVGVVGFTVIFEHISSKLEHRLEGTPFREMLNKIYKELMIIGLVSLG-----------------VTILENSGNLVHGTAFYSFEAIFFVLQASMVMRFSARLKRQFDLATKVPIDQMAAQLSLQRRTRAYRAVWVPLSRLRDSMEFVILRHQFLRTFEVPLNFDFGLYMRYSIDEYILSLLDIQPVTWLVVIVVLLANWGRTAAMDALDDGGDDQHITAAEEVTHRAMAAATSTSMHDRPHLQYLFNFDLRSVYDNSVHNSGLVSFVAAGWVLVLLAVGYFFVTRGVELKLLRQAGVRRLKDYEQVL 309
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A7S1TPK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPK6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.740e-20
Identity = 95/359 (26.46%), Postives = 156/359 (43.45%), Query Frame = 3 
Query:  150 TVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFANTA*SHMIKKVYKELMIMGLISFG-----------SASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQV--------QEWATG-----------DDEAVADSSXXXXXXXXXXXXXXXXXXXXXXXXXXXTYGDEG--------GSTGMEAFTINGYLLLLGTVAFYFLARGSELALPRKAGCTDTASYKAVLLKY 1112
            +VFG+GA+++    + CF+ ++  T++ E  T +L+ +   T    M+ K+YKELMI+GLISFG            +S  +AFE+AH+L FF+AI+    S +              +VS  +           +    + A      G E    H+     +  + LR + EF+I++ FF  EY LP +FDF+AYM   +D  I   I+V+  TW++L+    LNV RL +         E +TG           DD+  + SS                                G         + G+ +F + G+ L++ ++      R + L L +KAG  D+  Y + L K+
Sbjct:   22 SVFGMGADMEAFKVSLCFMGLVGFTVLFEMFTSYLEMKLQGTHYMEMVNKIYKELMILGLISFGLFMGVQTVSLDQSSYFLAFEYAHVLIFFVAIFLVLQSIA--------------LVSWCSYLKPLFAMADCSTDEEIVAEYDRLTGTEKWWFHNR---FTPFAPLRDATEFRIVRNFFFREYHLPVEFDFSAYMNLAMDHHITALIDVDPTTWIMLMAAMALNVFRLLILYDFDLEKAENSTGESTSRQLASSYDDDCSSSSSYGNDDGYSRRLSDAGFGPSMFWGLARRLASSSGCGDDEPDPAADGLVSFLVAGFFLVVMSLLTLLATRITSLRLLKKAGVNDSDEYISFLRKH 363
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A7S3UM22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM22_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 6.640e-17
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 3 
Query:  141 MGGTVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFANTA*SHMIKKVYKELMIMGLISFG-----------SASVLIAFEFAHILAFFIAI 401
            M G+VFGLGA+L+T + TYC + +IL T++ E +TH ++ +   T    M+ KVYKE+MIMG ISFG               L+AFEFAHI  FF A+
Sbjct:    2 MAGSVFGLGASLNTALTTYCLIGIILFTIIFEAVTHRVEHKLQGTPYMEMLAKVYKEMMIMGFISFGIFMAVQAGGVGHGDTLVAFEFAHIEVFFTAL 99
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A7S3GNH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNH1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.310e-10
Identity = 68/216 (31.48%), Postives = 103/216 (47.69%), Query Frame = 3 
Query:  189 GTYCFVAVILGTLVAEGITHHLDTQFANTA*SHMIKKVYKELMIMGLISFGSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSH--RHGQGRRLALRSNVPAHLPV------GRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQV 812
            GT  FVAV++   V EG+ H L+ +        +IKK+Y+E MI+G ISF    +L+A E +H   F   I+     + H  H V   V    +V  G  S   R+     LA  ++    L +       RG     L +   +      LR  +E+KI+Q FF+  Y LP +F FA YM   L   ++  +EV  ++W+IL     LN+ R++V
Sbjct:   15 GTIVFVAVLVVFTVFEGLLHILEVECNKHGLKGLIKKMYREFMILGFISFA---ILLATELSH---FKTNIW---YDAFHFAHIVILFVGFVFLVQSGLLSTLVRYRNRELLAHDNSSSEELIIDYVAMYNRGGLMKFLFNFGPISIPIPELREKIEYKIIQEFFVRNYNLPPEFKFANYMCGVLRHYVISLVEVRPISWIILACFVCLNLFRVEV 221
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A6A3HBP5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HBP5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.090e-7
Identity = 65/242 (26.86%), Postives = 109/242 (45.04%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVILGT----LVAEGITHHLDTQFA-NTA*SHMIKKVYKELMIMGLISF------------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQE 818
            GG+VF +G     DV  +  V V+ G     LV E   HHL+   A +    HM+KKVY+ELMI+GL+SF            G +  ++AF+ A ++ F +AI             +  + L   ++  G G+ R  +   +  +  V       +G+ +  L ++  V  R           +L+  F+  + LP  F F+ Y+R      I+  IEVE   W++L+ +A    A +++ E
Sbjct:    3 GGSVFQVGK----DVELFRVVVVLSGLAICLLVFEAALHHLEHHLARHDKYQHMLKKVYRELMILGLLSFIIKMLTEVGGIDGYSGTMLAFQVADLIIFILAI------------SLVLQALWVLVLLRG-GNKRADRAELITTQDLVDVLNSSDKGKPSDDLFNDEIVRHR-----------LLRNLFLRRFGLPQLFPFSKYVRRAQANNIVHMIEVEPSMWLLLLGMAWAFSAVVRILE 216
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: H3GQ06_PHYRM (EF-hand domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQ06_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 4.660e-6
Identity = 58/242 (23.97%), Postives = 106/242 (43.80%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFA-NTA*SHMIKKVYKELMIMGLISF------------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSR----LRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQE 818
            GG+VF +G +++         A+ +  L  EG  HHL+   + N+   HM+KKVY+ELMI+GL+SF            G +  ++AF+ A ++ F +AI                 ++   I+          +  R  L   +     V   + + +    +C      +     +  +E ++L+  F+  + LP  F F+ Y+R      I+  IEVE   W++L+ +A    + +Q+ E
Sbjct:    3 GGSVFRVGEDVELYQVVVVLSALAISLLAFEGALHHLEHSLSQNSKYQHMLKKVYRELMILGLLSFIIKMLIEVGGMDGYSGFMLAFQVADLIIFILAI----------------TLIIQAILXXXXXXXXXXRSDRAEL---ITTQDLVDVLQSSDSASSTSCCGGNQPKDSLFKKKIVEHRLLRHLFLRRFGLPQLFPFSKYLRRAQANNIVHMIEVEPSMWLLLLGMAWAFSSVVQIIE 225
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A2P4X948_9STRA (Solute carrier family, facilitated glucose transporter (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X948_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.940e-6
Identity = 62/239 (25.94%), Postives = 106/239 (44.35%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFA--NTA*SHMIKKVYKELMIMGLISF------------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRL--RSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILI--TLALLNVARL 806
            GG+VF +G ++D         A+ +  LV E   HHL+      N    HM+KKVY+ELMI+GL+SF            G + +++AF+ A ++ F +AI       +  +  +   +L         G ++      L    ++   L    G  +       C    +  L  +  ++ ++L+  F+  + LP  F F+ Y+R     TI+  IEVE   W++L+  T A   V R+
Sbjct:    3 GGSVFQVGKDVDLYEVAVLLNALAICLLVFEAALHHLEHHLLAHNDKYQHMLKKVYRELMILGLLSFIIKMLTEVGGIDGYSGLMLAFQVADLIIFILAI-------TLVLQAITVLLLL-------RGYNKRADRAELITTQDLVDVLKSSEGSTSW------CGKQPNGELVKKEIVKLRLLRHLFLQRFGLPQLFTFSKYLRRAQANTIVHMIEVEPSMWLLLLGMTWAFSAVVRI 221
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A329RBJ7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RBJ7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.680e-6
Identity = 63/246 (25.61%), Postives = 109/246 (44.31%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVI----LGTLVAEGITHHLDTQFA--NTA*SHMIKKVYKELMIMGLISF------------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNV--PAHLPVGRGREATALHDEACVMSRSSRLRSSM-EFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQE 818
            GG+VF LG     DV  Y  V V+    +  LV E   H+L+      N    HM+KKVY+ELMI+GL+SF            G +  ++AF+ A ++ F +AI             +  + +  N++    G ++      L    ++  P +     G++           S+ +  +  + + ++L+  F+  + LP  F F  Y+R      I+  IEVE   W++L+ +A    A +Q+ E
Sbjct:    3 GGSVFHLGE----DVALYEVVVVLNALAICLLVFEAALHYLEHHLLAHNDKYQHMLKKVYRELMILGLLSFIIKMLTEVGGIDGYSGTMLAFQVADLIIFILAIT------------LVLQAI--NVLLLLRGYNKRSDRAELITTQDLVDPLNSSEAGGKQ-----------SKGNLFKKDVVKHRLLRHLFLRRFGLPQLFPFTKYLRRAQATNIVHMIEVEPSMWLLLLGMAWAFSAVVQILE 219
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BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A225USB7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225USB7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.800e-5
Identity = 59/238 (24.79%), Postives = 106/238 (44.54%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFA--NTA*SHMIKKVYKELMIMGLISF-----------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQE 818
            GG+VF +G ++D       F  + +  LV E   HHL+ +    N    H++KKVY+ELMI+GL+SF           G + +++AF+ A ++ F +AI       +  +  V   +L         G ++      L    ++   L        TA        +     +  ++ ++L+  F+  + LP  F F+ Y+R      I+  IEVE   W++L+ +A    A +++ E
Sbjct:    3 GGSVFQVGKDVDLHDVVVLFNLLAICLLVFEAALHHLEHRLLAHNDKYQHILKKVYRELMILGLLSFIIKILIEVGIDGYSGLMLAFQVADLIIFILAI-------TLVLQAVTTLLLL-------RGYNKRADRAELITTQDLVDVLKAS----DTATSWFGKQPNDDLFQKKIVKLRLLRHLFLRRFGLPQLFPFSKYLRRAQSNNIVHMIEVEPSMWLLLLGMAWAFSAVVRILE 222
[Close]
BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Match: A0A225WUB3_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUB3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.170e-5
Identity = 59/239 (24.69%), Postives = 106/239 (44.35%), Query Frame = 3 
Query:  144 GGTVFGLGANLDTDVGTYCFVAVILGTLVAEGITHHLDTQFA--NTA*SHMIKKVYKELMIMGLISF------------GSASVLIAFEFAHILAFFIAIYGGPSSSSHGIHGVPKEVL**NIVSEGAGSHRHGQGRRLALRSNVPAHLPVGRGREATALHDEACVMSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEVEQVTWMILITLALLNVARLQVQE 818
            GG+VF +G ++D       F A+ +  LV E   HHL+      N    H++KKVY+ELMI+GL+SF            G + +++AF+ A ++ F +AI       +  +  +   +L         G ++      L    ++   L        TA        +     +  ++ ++L+  F+  + LP  F F+ Y+R      I+  IEVE   W++L+ +A    A +++ E
Sbjct:    3 GGSVFQVGEDVDLYEVVVLFNALAICLLVFEAALHHLEHHLLAHNDKYQHILKKVYRELMILGLLSFIIKILTEVGGIDGYSGLMLAFQVADLIIFILAI-------TLVLQAITVLLLL-------RGYNKRADRAELITTQDLVDVLKAS----DTATSWFGKQPNDDLFQKKIVKLRLLRHLFLRRFGLPQLFPFSKYLRRAQSNNIVHMIEVEPSMWVLLLGMAWAFSAVVRILE 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig68.17691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CJ86_9STRA6.940e-2026.01EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1TPK6_9STRA9.740e-2026.46Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3UM22_HETAK6.640e-1745.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3GNH1_9STRA1.310e-1031.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A3HBP5_9STRA5.090e-726.86Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
H3GQ06_PHYRM4.660e-623.97EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A2P4X948_9STRA4.940e-625.94Solute carrier family, facilitated glucose transpo... [more]
A0A329RBJ7_9STRA8.680e-625.61Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A225USB7_9STRA1.800e-524.79Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A225WUB3_9STRA3.170e-524.69EF-hand domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig68contigS-ischiensis_contig68:276171..281267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog2880.D8LUA9
EggNOG OGs2CKH2@1,2RZVJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size1394
Cds size795
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817114.0362954-UTR-S-ischiensis_contig68:276170..2763761622817114.0362954-UTR-S-ischiensis_contig68:276170..276376Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276171..276376 +
1695740863.4519236-UTR-S-ischiensis_contig68:276170..2763761695740863.4519236-UTR-S-ischiensis_contig68:276170..276376Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276171..276376 +
1622817114.0467787-UTR-S-ischiensis_contig68:276485..2765951622817114.0467787-UTR-S-ischiensis_contig68:276485..276595Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276486..276595 +
1695740863.462389-UTR-S-ischiensis_contig68:276485..2765951695740863.462389-UTR-S-ischiensis_contig68:276485..276595Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276486..276595 +
1622817114.0570521-UTR-S-ischiensis_contig68:276859..2769171622817114.0570521-UTR-S-ischiensis_contig68:276859..276917Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276860..276917 +
1695740863.4723778-UTR-S-ischiensis_contig68:276859..2769171695740863.4723778-UTR-S-ischiensis_contig68:276859..276917Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 276860..276917 +
1622817114.0691772-UTR-S-ischiensis_contig68:277166..2772441622817114.0691772-UTR-S-ischiensis_contig68:277166..277244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 277167..277244 +
1695740863.4824758-UTR-S-ischiensis_contig68:277166..2772441695740863.4824758-UTR-S-ischiensis_contig68:277166..277244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 277167..277244 +
1622817114.082065-UTR-S-ischiensis_contig68:278425..2785721622817114.082065-UTR-S-ischiensis_contig68:278425..278572Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 278426..278572 +
1695740863.4926512-UTR-S-ischiensis_contig68:278425..2785721695740863.4926512-UTR-S-ischiensis_contig68:278425..278572Schizocladia ischiensis KU_0333UTRS-ischiensis_contig68 278426..278572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817114.0924802-CDS-S-ischiensis_contig68:278572..2785891622817114.0924802-CDS-S-ischiensis_contig68:278572..278589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 278573..278589 +
1695740863.5060124-CDS-S-ischiensis_contig68:278572..2785891695740863.5060124-CDS-S-ischiensis_contig68:278572..278589Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 278573..278589 +
1622817114.103591-CDS-S-ischiensis_contig68:279306..2794271622817114.103591-CDS-S-ischiensis_contig68:279306..279427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 279307..279427 +
1695740863.522473-CDS-S-ischiensis_contig68:279306..2794271695740863.522473-CDS-S-ischiensis_contig68:279306..279427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 279307..279427 +
1622817114.1138506-CDS-S-ischiensis_contig68:279788..2800871622817114.1138506-CDS-S-ischiensis_contig68:279788..280087Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 279789..280087 +
1695740863.5344183-CDS-S-ischiensis_contig68:279788..2800871695740863.5344183-CDS-S-ischiensis_contig68:279788..280087Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 279789..280087 +
1622817114.1244605-CDS-S-ischiensis_contig68:280909..2812671622817114.1244605-CDS-S-ischiensis_contig68:280909..281267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 280910..281267 +
1695740863.5444567-CDS-S-ischiensis_contig68:280909..2812671695740863.5444567-CDS-S-ischiensis_contig68:280909..281267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig68 280910..281267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig68.17691.1prot_S-ischiensis_contig68.17691.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig68 278573..281267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig68.17691.1

>prot_S-ischiensis_contig68.17691.1 ID=prot_S-ischiensis_contig68.17691.1|Name=mRNA_S-ischiensis_contig68.17691.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=265bp
MSRSSRLRSSMEFKILQFFFMAEYQLPWDFDFAAYMRDNLDATILDAIEV
EQVTWMILITLALLNVARLQVQEWATGDDEAVADSSHSSSSSSTTTPSSH
RLLGGSTHSSSSSTYGDEGGSTGMEAFTINGYLLLLGTVAFYFLARGSEL
ALPRKAGCTDTASYKAVLLKYQQWNAKREQEHVVLSEAQMAQFKERSQAL
SRLAPVLHHDRPSSAVSSHGHDEAGGGQRALSPRGVLGSVSLRVPGLGSP
RGRVVAGHQDAELAG
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mRNA from alignment at S-ischiensis_contig68:276171..281267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig68.17691.1 ID=mRNA_S-ischiensis_contig68.17691.1|Name=mRNA_S-ischiensis_contig68.17691.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5097bp|location=Sequence derived from alignment at S-ischiensis_contig68:276171..281267+ (Schizocladia ischiensis KU_0333)
AGCGGTTCAATATGGCCACCACACCCAACCCCGCCTGGAAGAGAGTGACC
TTGCGACACTGAGCATGTCTCAGTCGGGGTGGAGGCAAGAGAGGAGGAAA
ATCGGAGATCAGGGGGAGGCAGGGCTCCTGCCGCGGATGCATGGGAGGCA
CCGTGTTCGGCCTCGGGGCTAATCTCGACACAGATGTTGGTACCTACTGC
TTCGTGGTGAGCAAGCCGAACCTGGTCTGCTACAAGCTCACCTGCTGGGC
ATGCGAGTTACGTGTGATTCCGCTCTCACGCCCGCGGCGTCACCGCTTCT
GTTCAACTTTGACAGGCCGTCATCCTCGGCACGCTCGTAGCTGAGGGCAT
CACCCACCACCTGGATACACAGTTTGCAAACACAGCCTAGTCGCATATGA
TCAAGAAGGTCTACAAAGAGCTTATGTGAGTGGGACTTTTACTGTGTCCC
AAACCAGGTGGGTGGGCCCCACACTGAACAAACTGCCGCTCATGCTCCCC
CTGTTTGGAGAATTTGATGATGAACTACCGTGTCTACCCACAGATACGCC
CTTCACATTCTTGCGCAAGAGAGACTGTGTTGCTACCAGCTGCCACAGTA
GCCCCCCCTCTTCTGGGGACACACTGCATGCTTATCAGCATATCTCGCTC
ATACTCTTCCACGCCTTCCGGCCCTCGCTCCCGAGACAGGATAATGGGCC
TGATCTCTTTTGGAAGCGCGAGCGTCCTCATTGCCTTCGAGTTTGCGGTG
CGTTTCATCTGACCTTGTACTTCTATTCTGCCAGATCCTCCGATGGGGAA
GAAAAAGATGTTCCGATTGGCCGCGGCAATGGTTGCGGGATAGACCCGCC
GATGTGATGACAAGGCCTGCTCACATTTTCACGACGTTTGTTTTGCGAAA
TGCTGCATGGCGGTTGAGGCACATACTATAAAAAATTTGAGTCTGACCTG
TTGGCCACCTTGTGCCTCTGTGAACATGTCTTCTCGTGCCGTCCAGCACA
TCCTTGCATTCTTCATAGCAATTTATGGTGGTCCAAGCAGCAGCTCTCAT
GGGATTCACGGTGTTCCAAAAGAGGTGAGTCGACAAGAGGAGGGGGGAGA
GAGGGAGAGAGACCACCCCTTGGCTTGGCTTGCCCGGGAATTGTTCATTC
CATGTACGTGCTTTGAAGTACAGTAGACAGACTAGAGTTTGTTGTTCACA
ACGTCAGTGCTCACACATCTCTGTCTGTCCGAAGTGTGCAAAGCAGTGGC
ATCCAGAGTCCAGAAAGCTTATGTTTGTTGCAGTTGTTTTTCAGACCCCG
CCGGATTCACCTTTACAGACGCGGTGCGAGGTGCAGTGCCCACAGCATTT
GCTTTTGTGGCATTGCCTTCATGAGCCCACTGGACTCCAATTTGATTGGG
CAAAGTGCTCGGACATTACTAGCTAGGCCCCATCACCCAAGCAGCGGGCC
CCTACTGGCTACGGCCCTGTGTGCGATGCCTGTACGGCAGTGCCTCTAGC
TCACCACAGCGCCATTGCTACTCTCAACCTTCTGTCCCGACGAATTCATC
TTGGTGAGGCCCAATATTCTGCGAATATATTCCTCTCACTGTTAGTCCTT
ATCCAGCAGTGCATCACTGATTTTTGTTGCCGTCGTATATCCTTGGTTCC
TTGGCCGGGCTACAGGCCCTGTGCCCCGCCAGGCACGCACTTCCAAGCGT
CTTCAAAGCACTCCGAAGTACTGCAGTTGTCACTTTGCTCCAGCAGCACG
ACAAAATGCAAATTATCAGGGTGCATGCCAAAGAGTGCGCGGGGGTCGCG
CGTGGATGTGCAGACTGTGTGGACACCTTCTCGGAGCATCTGTAGCGAGA
AGAGTCCAACCACAAGCTGGCGGACGATAGCGTGTCGTGTATATATATAT
ACTCACGTGGTCCTTGCCGTAGTCCCAAGACCACTGACCATGCGCCCCTG
TCAAGACGGAGCAGCAGAGCCAGGGGGGGAAGTGGCGGCCACCCCCCCTT
CAGAAGCCGAGGGGTGGCCAAGTCCATACCCCCCCCATCCCCGACTCGTC
ATATGAGTCAGAAAGCACTGAGAAAGCCAGTCTCCAGTGGGCCTCACCCC
CAGCTCGGGACGCTGGACCACATGGGACATGCCCCACCAAGTGGTGGCCC
GGGTAGACACGGGCAGTGTGGGCCTGCACAGCTTGCGAGGGCCCAGTGAT
CGGAGGCTGGTTGATTCGGCTCGTTCCCGCTGCGCTGTCAAATGTGTTGG
CGCAGGTTCTTTGATGAAACATCGTCAGCGAAGGCGCTGGATCTCATCGG
CATGGTCAAGGACGGCGACTGGCGCTACGATCAAACGTACCTGCCCACCT
CCCGGTGGGACGCGGGAGAGAGGCCACGGCGTTGCATGATGAAGCGTGTG
TCATGTCCCGTTCCTCAAGGTGTTGCCCACGCTGTCCTGTTCAACCCTTT
TACCCCTGGGGTCCGTATAATCATAGGGTTTTAGTGTGAAGTCCAGTTTA
CCAGGGGGTAAAGGGTTAAAGGTGAGGCAGACGAGGTGGGGCTGGCTATC
GTGTCGCGCATGGCTTTGGTGACTGAGGGATAGCAGCATGCTTGGAAGTA
CTCATCTTCAAAGAGCTTTGGAGTCCTCCAAGTGCGGGCTGCCGACTCAT
GTCAGGCCAAATCAAATGTGCAGCATTTTCAACGTATTTCTTCCAATCCT
GCTTGGTTAGAGCAGTCCATGCGGCCTGCTGGAATCTGTTTAGTCGTTGT
GACCAGTGTTCCCAGCAAGGACATCTGGAGGGCTTCGAGGAGCCGTTGCC
GGTCACTGTTTGGCCCGGTAATATGCCAACAACCAGCAGTACCAGGTAAT
CGTAGTAACGTTGGGTGAGCCAACCATTCGAGCCAGATAAAAATAGAATG
TATTCGGTCAAGCGCTGCCAACCTACTGCAGAGATCAAGGTACTCTTACG
TTTGACAAGCAAGCTCGTGTCTGCGTGTATTCTCTTCCCAGTATCTCCCA
AGCGGTGTTGCGTCGGTCACTTAGTCCGAGGGTTGCCCGTGAGGTGCATG
CATCAGTCTGCCCCTCCCCCCTCTCTGCACAAGCCAGCTGCCTGGGCGAG
GCAATAAACCACTTGAGCGCCACTTGTGCCTGGCAGGTTGCGCAGCAGCA
TGGAGTTTAAGATACTGCAGTTCTTCTTCATGGCGGAGTATCAGTTGCCC
TGGGACTTTGACTTTGCCGCCTACATGCGGGACAACCTGGATGCTACGAT
TCTCGATGTGAGTGACCGCTAGCCAACCGGCAAAGGCCGCAATTGGCGGG
GGGGGGGGGGACATCATTCGCTCCTTGCTTGTGTACGAGTGTGTTTGTGC
GCCCGTATTTGTTGTGTACGTACGTGCAGGCTCGCTCACACGCATCTGTG
ACAGAGTGAGAGGGAAAGAAAGAGGCTGGGAGTGAGAGGGAGGGAGGGAG
GGAGAGAGGGAGGGAGAGTAAGTAGGCTGTTGACCGTTGGCTGTGTCGGC
CAGGGCTTCAGTTTCCAGAAACCGTCCTTGCCAAATTTGCAGTCATGCAG
CTGGAGGGAGCTGGCCGAGTGCTGTGCACCCGTCACATTGATTGGCTTCC
CGAACAAACGGTGGGCAGGCTATCGAAGTGGAGCAGGTCACGTGGATGAT
CCTCATCACCCTGGCGCTGCTTAACGTGGCCCGGCTGCAAGTGCAAGAGT
GGGCCACTGGAGATGACGAAGCGGTTGCAGATTCCTCACACTCGAGCAGC
AGCAGCAGCACTACCACGCCCAGCAGCCACCGACTGCTGGGTGGTTCCAC
ACATTCCTCCTCCAGCAGCACGTACGGTGACGAGGGCGGCTCCACAGGCA
TGGAGGCATTCACTATCAACGGCTACCTGCTGCTCTTGGGCACAGTGGCC
TTCTACTTCCTCGCAAGGTGTGGTCTGGTGTTGACGGGTTGTCTCTCTGA
GCCTCCAAGTTTCCATGCTGCAATGGCATTCGCCGGTTCCGGGTCCCACC
ATGGCCTGTGCAAGTGTGCTTGGCTGTGGCCAGTTGTTGGATCACGCGCT
GCTGCATGTGACAAATGGTACCCGTGCCTCTCTTCTGCCCCCCCCCCCGT
TGTCACTGCGTGGGTGTCGCCCTGGTATAGTGGTTCATGCGCTGCTGCTG
TGTACTACTACATGGTACGAGTACAGTAGTACCATAGATAAGTAGTCCGA
GGCAGTTCAAGTCTTGTCATCCTGGAGTACTTCGAAGTACTATTTTGAGT
GGTAGACAAGCGGCGAGTTCCAGGCCCCGTGTCAAAACGCTCGTCCCGAA
ACGGAACTCAACGAAGCCCTTCTTCCCCTCGCAGGGCAAAAAGAAGGCAA
AATATAAAGAAGCAACTACAGGCGGGGCAGGGAAAAGGAAAGGGCGGGGA
AGGGGAGTCTCTTGTGCTCACAGTGGGGCATGCGGGTAGGGCAGGCGGGG
GCTAGACCGGACACGAACTCCGAGCTCACGACGTAGCTGTGGGAGCACAC
GTAGACCAGATAGTGTGAGCAAATGCCACAGTGTACTATGTATCTTCCTT
CCAAGATCAAGCAGTGCCATGGTGCGGCTGTGCTGTAGTGCTCCTCCACA
ATACTCTACTTCCACACATGAGCTTGGCGTAAACTGTGCACAGGCACCTC
AGCGCGCCCGTTCTATACCAGGGAGGGATGTGCACCATAGAGCTCTGTAT
AGCGACGCCGACAACCTGTGCCACCCTGCTGCCTGGCAGGGGTTCTGAGC
TGGCGCTCCCCCGCAAAGCGGGCTGCACGGACACGGCGTCGTACAAGGCG
GTGCTGCTCAAGTATCAGCAATGGAACGCCAAGAGGGAGCAGGAGCATGT
CGTCTTGTCCGAGGCGCAGATGGCGCAGTTCAAGGAACGCTCGCAAGCAC
TCTCTCGACTCGCCCCTGTCCTCCACCACGATCGGCCCTCGAGCGCCGTC
TCTAGCCACGGTCACGATGAGGCCGGCGGGGGCCAACGAGCCCTGTCCCC
GCGAGGGGTCCTGGGATCAGTCAGCCTGAGGGTGCCGGGGCTCGGCAGCC
CGAGGGGCAGGGTCGTGGCTGGACACCAAGATGCGGAGCTCGCAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig68:276171..281267+

>mRNA_S-ischiensis_contig68.17691.1 ID=mRNA_S-ischiensis_contig68.17691.1|Name=mRNA_S-ischiensis_contig68.17691.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1590bp|location=Sequence derived from alignment at S-ischiensis_contig68:276171..281267+ (Schizocladia ischiensis KU_0333)
ATGTCCCGTTCCTCAAGATGTCCCGTTCCTCAAGGTTGCGCAGCAGCATG
GAGTTTAAGATACTGCAGTTCTTCTTCATGGCGGAGTATCAGTTGCCCTG
GGACTTTGACTTTGCCGCCTACATGCGGGACAACCTGGATGCTACGATTC
TCGATGTTGCGCAGCAGCATGGAGTTTAAGATACTGCAGTTCTTCTTCAT
GGCGGAGTATCAGTTGCCCTGGGACTTTGACTTTGCCGCCTACATGCGGG
ACAACCTGGATGCTACGATTCTCGATGCTATCGAAGTGGAGCAGGTCACG
TGGATGATCCTCATCACCCTGGCGCTGCTTAACGTGGCCCGGCTGCAAGT
GCAAGAGTGGGCCACTGGAGATGACGAAGCGGTTGCAGATTCCTCACACT
CGAGCAGCAGCAGCAGCACTACCACGCCCAGCAGCCACCGACTGCTGGGT
GGTTCCACACATTCCTCCTCCAGCAGCACGTACGGTGACGAGGGCGGCTC
CACAGGCATGGAGGCATTCACTATCAACGGCTACCTGCTGCTCTTGGGCA
CAGTGGCCTTCTACTTCCTCGCAAGGCTATCGAAGTGGAGCAGGTCACGT
GGATGATCCTCATCACCCTGGCGCTGCTTAACGTGGCCCGGCTGCAAGTG
CAAGAGTGGGCCACTGGAGATGACGAAGCGGTTGCAGATTCCTCACACTC
GAGCAGCAGCAGCAGCACTACCACGCCCAGCAGCCACCGACTGCTGGGTG
GTTCCACACATTCCTCCTCCAGCAGCACGTACGGTGACGAGGGCGGCTCC
ACAGGCATGGAGGCATTCACTATCAACGGCTACCTGCTGCTCTTGGGCAC
AGTGGCCTTCTACTTCCTCGCAAGGGGTTCTGAGCTGGCGCTCCCCCGCA
AAGCGGGCTGCACGGACACGGCGTCGTACAAGGCGGTGCTGCTCAAGTAT
CAGCAATGGAACGCCAAGAGGGAGCAGGAGCATGTCGTCTTGTCCGAGGC
GCAGATGGCGCAGTTCAAGGAACGCTCGCAAGCACTCTCTCGACTCGCCC
CTGTCCTCCACCACGATCGGCCCTCGAGCGCCGTCTCTAGCCACGGTCAC
GATGAGGCCGGCGGGGGCCAACGAGCCCTGTCCCCGCGAGGGGTCCTGGG
ATCAGTCAGCCTGAGGGTGCCGGGGCTCGGCAGCCCGAGGGGCAGGGTCG
TGGCTGGACACCAAGATGCGGAGCTCGCAGGGGGGTTCTGAGCTGGCGCT
CCCCCGCAAAGCGGGCTGCACGGACACGGCGTCGTACAAGGCGGTGCTGC
TCAAGTATCAGCAATGGAACGCCAAGAGGGAGCAGGAGCATGTCGTCTTG
TCCGAGGCGCAGATGGCGCAGTTCAAGGAACGCTCGCAAGCACTCTCTCG
ACTCGCCCCTGTCCTCCACCACGATCGGCCCTCGAGCGCCGTCTCTAGCC
ACGGTCACGATGAGGCCGGCGGGGGCCAACGAGCCCTGTCCCCGCGAGGG
GTCCTGGGATCAGTCAGCCTGAGGGTGCCGGGGCTCGGCAGCCCGAGGGG
CAGGGTCGTGGCTGGACACCAAGATGCGGAGCTCGCAGGG
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