mRNA_S-ischiensis_contig10.1599.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig10.1599.1
Unique NamemRNA_S-ischiensis_contig10.1599.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: UPI00189DDB5A (tripartite motif containing 35-28 n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189DDB5A)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-8
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  115 EHLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLCKEEI 252
            + L C VC   F +PV+LPC+H+ C EC ++S+EF K CPLC+E +
Sbjct:   19 KDLTCPVCHGIFQDPVLLPCSHSFCRECLQKSIEFNKNCPLCREVV 64
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: A0A0D7B749_9AGAR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B749_9AGAR)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-7
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   85 SLGPGLRHVGEHLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLCK 243
            S  PGLR +   L+C +C   F  PV L C H+ CS+C +Q++  ++ECP C+
Sbjct:   18 STAPGLRALDNALRCTICKELFSGPVSLRCGHSFCSQCIRQALSAKQECPTCR 70
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: A0A7S1J7X5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J7X5_9EUGL)

HSP 1 Score: 55.1 bits (131), Expect = 7.000e-7
Identity = 18/51 (35.29%), Postives = 30/51 (58.82%), Query Frame = 1 
Query:  100 LRHVGEHLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLCKEEI 252
            ++ +   L+C +C+ +F  P++ PCNH  C EC +  +    +CPLCK  I
Sbjct:   27 VQQIANELRCIICYDFFEEPLVTPCNHCFCKECIEHHLRLSSKCPLCKTHI 77
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: UPI001CC6AE6C (BRCA1-associated RING domain protein 1-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC6AE6C)

HSP 1 Score: 53.9 bits (128), Expect = 2.530e-6
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   88 LGPGLRHVGE---HLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLCK 243
            L P L H+ +    L+C VC +    P+++PCNH +CS C  ++ EF  ECP+C+
Sbjct:   13 LNPWLLHLQKMCLELKCSVCLNLLNRPLLMPCNHILCSSCIPRTTEFGSECPVCR 67
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: UPI0010FC8C38 (LON peptidase N-terminal domain and RING finger protein 2-like n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FC8C38)

HSP 1 Score: 53.1 bits (126), Expect = 4.710e-6
Identity = 18/46 (39.13%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:  115 EHLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLCKEEI 252
            E L+C +C+S  Y  +   C H  C +C K+S++FR ECP C++ +
Sbjct:  396 EDLECKICYSILYQAITTDCGHTFCRDCLKRSLDFRPECPYCRQSL 441
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BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Match: UPI001C4F31ED (BRCA1-associated RING domain protein 1-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F31ED)

HSP 1 Score: 51.2 bits (121), Expect = 7.280e-6
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   88 LGPGLRHVGE---HLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKECPLC 240
            L P L H+ +    L+C +C +    P+++PCNH +CS C  +S EF  +CP+C
Sbjct:   13 LNPWLLHLQKMCLELKCPLCLNLLNRPLLIPCNHILCSSCIPRSTEFGSKCPVC 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig10.1599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00189DDB5A3.110e-850.00tripartite motif containing 35-28 n=1 Tax=Sebastes... [more]
A0A0D7B749_9AGAR3.450e-741.51Postreplication repair E3 ubiquitin-protein ligase... [more]
A0A7S1J7X5_9EUGL7.000e-735.29Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001CC6AE6C2.530e-640.00BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
UPI0010FC8C384.710e-639.13LON peptidase N-terminal domain and RING finger pr... [more]
UPI001C4F31ED7.280e-638.89BRCA1-associated RING domain protein 1-like n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig10contigS-ischiensis_contig10:2992666..2993105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog4792.ETI47459
EggNOG free text desc.protein K6-linked ubiquitination
EggNOG OGs3QE84@4776,KOG4362@1,KOG4362@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_004780.1
Exons2
Model size279
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig10.1599.1prot_S-ischiensis_contig10.1599.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig10 2992744..2993105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.546644-UTR-S-ischiensis_contig10:2992665..29927431622815537.546644-UTR-S-ischiensis_contig10:2992665..2992743Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2992666..2992743 +
1695739756.0306873-UTR-S-ischiensis_contig10:2992665..29927431695739756.0306873-UTR-S-ischiensis_contig10:2992665..2992743Schizocladia ischiensis KU_0333UTRS-ischiensis_contig10 2992666..2992743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.5602493-CDS-S-ischiensis_contig10:2992743..29928081622815537.5602493-CDS-S-ischiensis_contig10:2992743..2992808Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2992744..2992808 +
1695739756.04053-CDS-S-ischiensis_contig10:2992743..29928081695739756.04053-CDS-S-ischiensis_contig10:2992743..2992808Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2992744..2992808 +
1622815537.5748131-CDS-S-ischiensis_contig10:2992969..29931051622815537.5748131-CDS-S-ischiensis_contig10:2992969..2993105Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2992970..2993105 +
1695739756.052088-CDS-S-ischiensis_contig10:2992969..29931051695739756.052088-CDS-S-ischiensis_contig10:2992969..2993105Schizocladia ischiensis KU_0333CDSS-ischiensis_contig10 2992970..2993105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig10.1599.1

>prot_S-ischiensis_contig10.1599.1 ID=prot_S-ischiensis_contig10.1599.1|Name=mRNA_S-ischiensis_contig10.1599.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
MESLGPGLRHVGEHLQCCVCFSYFYNPVMLPCNHAMCSECSKQSMEFRKE
CPLCKEEIHNKRSVGRN
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mRNA from alignment at S-ischiensis_contig10:2992666..2993105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig10.1599.1 ID=mRNA_S-ischiensis_contig10.1599.1|Name=mRNA_S-ischiensis_contig10.1599.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=440bp|location=Sequence derived from alignment at S-ischiensis_contig10:2992666..2993105+ (Schizocladia ischiensis KU_0333)
ATTGGTGCCAGGTACAGGCTGTCGCTGGTTGCACAGCGCTAAGCAGAAGC
CTGCGGTATCGCGCAAGCCAGCGCAAGTATGGAGAGCCTCGGCCCCGGGC
TACGGCACGTGGGTGAACACCTACAATGTTGCGTCTGCTTCAGGTGGGCC
CCATCGGCATATTTCCTGCCTGTCGTTAGGGCATGATGCTGTCGTGGAGG
GACGCTCCACTTATCACCTGGTGCATCCTGGCATCGGAGCAAGCCTGACA
CCTCTCCCCCGCGCTCACCCGGTCCCCTGTCGCCCCCTCTGCGAAATATG
TCAGCTACTTCTACAACCCGGTAATGCTTCCGTGCAATCACGCCATGTGC
TCGGAGTGCTCCAAGCAGTCGATGGAGTTTCGGAAAGAGTGCCCCTTGTG
CAAGGAGGAAATACACAACAAGCGCAGCGTAGGGCGCAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig10:2992666..2993105+

>mRNA_S-ischiensis_contig10.1599.1 ID=mRNA_S-ischiensis_contig10.1599.1|Name=mRNA_S-ischiensis_contig10.1599.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig10:2992666..2993105+ (Schizocladia ischiensis KU_0333)
ATGGAGAGCCTCGGCCCCGGGCTACGGCACGTGGGTGAACACCTACAATG
TTGCGTCTGCTTCAGATGGAGAGCCTCGGCCCCGGGCTACGGCACGTGGG
TGAACACCTACAATGTTGCGTCTGCTTCAGCTACTTCTACAACCCGGTAA
TGCTTCCGTGCAATCACGCCATGTGCTCGGAGTGCTCCAAGCAGTCGATG
GAGTTTCGGAAAGAGTGCCCCTTGTGCAAGGAGGAAATACACAACAAGCG
CAGCGTAGGGCGCAACCTACTTCTACAACCCGGTAATGCTTCCGTGCAAT
CACGCCATGTGCTCGGAGTGCTCCAAGCAGTCGATGGAGTTTCGGAAAGA
GTGCCCCTTGTGCAAGGAGGAAATACACAACAAGCGCAGCGTAGGGCGCA
AC
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