prot_S-ischiensis_contig1.152.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.152.1
Unique Nameprot_S-ischiensis_contig1.152.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length145
Homology
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BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.920e-8
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 0 
Query:   46 ATDHSPPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTG-YFAVAGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFL 144
            ATD   P  +  +E  D  WPV+LV G ++ VQW +   F  A+    +   Y  +A   +A+FL     + KAW+   E+D+ AKY F V+ VA +Y L
Sbjct:   19 ATDE--PFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENIGKAWECFCEFDELAKYAFAVLAVAFSYAL 116
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BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.960e-8
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 0 
Query:   46 ATDHSPPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTG-YFAVAGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFL 144
            ATD   P  +  ++  D  WPV+LV G ++ VQW +   F  A+    +   Y  +A + +A+FL     + KAW+   E+D+ AKY F V+ VA +Y L
Sbjct:   18 ATDE--PFADQASDILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAVGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSYAL 115
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP5_ECTSI4.920e-836.00Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE4.960e-835.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..81
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 82..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..109
NoneNo IPR availableTMHMMTMhelixcoord: 63..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:936380..938200 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.152.1mRNA_S-ischiensis_contig1.152.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 936378..938200 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.152.1 ID=prot_S-ischiensis_contig1.152.1|Name=mRNA_S-ischiensis_contig1.152.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
AGHSTHRPAAGSDPGDPSLRQPLQLFKRRTGAATCQVFRSLDAAMATDHS
PPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTGYFAV
AGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFLF
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