mRNA_S-ischiensis_contig1.152.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.152.1
Unique NamemRNA_S-ischiensis_contig1.152.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.920e-8
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:  136 ATDHSPPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTG-YFAVAGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFL 432
            ATD   P  +  +E  D  WPV+LV G ++ VQW +   F  A+    +   Y  +A   +A+FL     + KAW+   E+D+ AKY F V+ VA +Y L
Sbjct:   19 ATDE--PFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENIGKAWECFCEFDELAKYAFAVLAVAFSYAL 116
[Close]
BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.960e-8
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:  136 ATDHSPPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTG-YFAVAGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFL 432
            ATD   P  +  ++  D  WPV+LV G ++ VQW +   F  A+    +   Y  +A + +A+FL     + KAW+   E+D+ AKY F V+ VA +Y L
Sbjct:   18 ATDE--PFADQASDILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAVGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSYAL 115
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP5_ECTSI4.920e-836.00Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE4.960e-835.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:936378..938200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
Ec32 ortholog descriptionFarnesyl pyrophosphate synthase
Ec32 orthologEc-10_003020.1
EC2.5.1.1,2.5.1.10,4.4.1.15
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.152.1prot_S-ischiensis_contig1.152.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 936380..938200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.5706184-CDS-S-ischiensis_contig1:936379..9364631622815389.5706184-CDS-S-ischiensis_contig1:936379..936463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 936380..936463 -
1695739675.7602894-CDS-S-ischiensis_contig1:936379..9364631695739675.7602894-CDS-S-ischiensis_contig1:936379..936463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 936380..936463 -
1622815389.5819092-CDS-S-ischiensis_contig1:937402..9376451622815389.5819092-CDS-S-ischiensis_contig1:937402..937645Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 937403..937645 -
1695739675.7722273-CDS-S-ischiensis_contig1:937402..9376451695739675.7722273-CDS-S-ischiensis_contig1:937402..937645Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 937403..937645 -
1622815389.592855-CDS-S-ischiensis_contig1:938092..9382001622815389.592855-CDS-S-ischiensis_contig1:938092..938200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 938093..938200 -
1695739675.783779-CDS-S-ischiensis_contig1:938092..9382001695739675.783779-CDS-S-ischiensis_contig1:938092..938200Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 938093..938200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.152.1

>prot_S-ischiensis_contig1.152.1 ID=prot_S-ischiensis_contig1.152.1|Name=mRNA_S-ischiensis_contig1.152.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
AGHSTHRPAAGSDPGDPSLRQPLQLFKRRTGAATCQVFRSLDAAMATDHS
PPLGELLAEGADLLWPVVLVSGFIVGVQWMIHARFKPASQRSAMTGYFAV
AGMSSAFFLASRGELAKAWDHVSEYDDQAKYLFTVVTVAAAYFLF
back to top

mRNA from alignment at S-ischiensis_contig1:936378..938200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.152.1 ID=mRNA_S-ischiensis_contig1.152.1|Name=mRNA_S-ischiensis_contig1.152.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1823bp|location=Sequence derived from alignment at S-ischiensis_contig1:936378..938200- (Schizocladia ischiensis KU_0333)
GCGGGGCATTCGACGCATAGGCCAGCAGCGGGGTCCGACCCTGGCGACCC
GAGTTTGCGGCAACCATTACAGCTTTTCAAGAGGAGGACCGGCGCTGCTA
CTTGTCAGGTATGGGGCGAGATAGGCGGCAAGTGCGAACACAGGCGACCG
CACCCGCAGGCGTCACAAATTCTTTGGCGCATGACCATGCTCGTTGTCCG
CCCACCAGCCAGTGCCACCCACACTGCGCGAACGCGTCGGACTGTCGACG
CTACCCTCCATGGATGTAGACCTGCGGGTATTGTGACCTGCATCGGTGAG
TTTGTTTGTTGGTGAGCCATAGCAGATGAAAGGTTCTGCTGCAGCTCTTG
CTGTTCATGTTCACGGCTACGCTCTCCCGTCACAACGGCCCAGAGGTCTA
TTCGTCTCTCTTAGCTTCGCGGAAGTCGCCGTGCTCCAGCAAGGAAGAGG
ATTGCCTTACGTAGCCGGGGCTGCACCACTCGACATCGGCATGGGTGGAC
TGTTCACTGAGAGGCGTATCCTTCCACCCCCTGCCTCCCCAACTCGTGTC
GGCAGGTGTTTCGCTCCCTAGACGCAGCCATGGCGACCGACCATTCGCCC
CCGTTGGGGGAGCTCCTGGCCGAGGGAGCCGACCTCTTGTGGCCCGTGGT
TCTGGTCTCGGGGTTTATCGTGGGCGTGCAGTGGATGATCCATGCCCGAT
TCAAGCCCGCTTCGCAGCGGTCCGCCATGACGGGATACTTTGCGGTGGCT
GGCATGAGCTCCGCCTTTTTCCTGGCTTCGAGAGGGGAGTTGGCCAAGGT
GGGGAGTTTCTCAATTTCTCCTCGTGCGTCGCGCAGCGGAGTGACTGGGC
GTGTGGGCGGGTCCATGGGGCCGGTCGAAGGGGGCAGGGAGAGGGAAGAA
GAGGGAGCGGGGCGACAGCGAAGAGGGGGTTTTGCTGGGCCATGAGGGTT
CAGGAATGTCAATATACCTGCAGCCATCCACACTTCGTATTAGTAAGTAC
CTCTCGCTTAGGGTGACTACTGCTTCGAACTACTACAGTAGATTGAAGTG
ACTTGGTTGGTAGATAGGTGGGCGATTTTCCGGGCCCCATCCCGAATTGG
GACCTCGCCAGAAGCCGTTCTTTCGCTCGCAGGGCACAAAAACAGAGGCA
GAGGAAAATGAAGCACAGGGGGGCGGGAAGGGGGGGGCTCTCTTGTGCCA
CGCCCTGTATTGATTGCATACTCGAGCTCAATTATACCTATACTTGCAAG
TATTCGGTTACCTCCCCATGTTGTTGTAGCCCTCCTCGCCATACTCTGTG
AATACTCGCCATCCACAGCAGGGCCAACCTCCCCACAAGCCTCTCCGCTC
AGCCGCAACCGCCGCTGTCCCCCCACCTGCCCGCGTGCCTGCCTGTGTGC
CTGCCGGCCTGCCTGCATCCCGGCCTGCCGTCCATACACGACCGCCCAGC
CCTGGTCCTGACTTGCCCTCCACATCCCCCGGCAATGCACTGGTACACAC
AAGTTCCCGACTCGCACTCGGGGCAGCTGTCTGCGACAAATAGGTATCTC
CTGTGGTTGTTTTGCCAACTCCCTCCCCCCTTTTCTCCTGCTCCTCCTCC
TCCTCCTCCTCCTCCTTTCCTCCACCCCTCTTCCCCCTTCTCATCGCCCT
TGCCCCGTCTGGGCAACCTCTTGCCCCCCTTCCGCCGCCGCCACCACTCA
ACCTCCCCTTCTTCTCGCCGCGCCCCCCCGCTTCCAGGCCTGGGACCACG
TCTCTGAGTACGACGACCAGGCCAAGTATCTCTTCACGGTGGTCACTGTA
GCAGCCGCTTACTTCCTCTTCAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:936378..938200-

>mRNA_S-ischiensis_contig1.152.1 ID=mRNA_S-ischiensis_contig1.152.1|Name=mRNA_S-ischiensis_contig1.152.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig1:936378..938200- (Schizocladia ischiensis KU_0333)
GCGGGGCATTCGACGCATAGGCCAGCAGCGGGGTCCGACCCTGGCGACCC
GAGTTTGCGGCAACCATTACAGCTTTTCAAGAGGAGGACCGGCGCTGCTA
CTTGTCAGGCGGGGCATTCGACGCATAGGCCAGCAGCGGGGTCCGACCCT
GGCGACCCGAGTTTGCGGCAACCATTACAGCTTTTCAAGAGGAGGACCGG
CGCTGCTACTTGTCAGGTGTTTCGCTCCCTAGACGCAGCCATGGCGACCG
ACCATTCGCCCCCGTTGGGGGAGCTCCTGGCCGAGGGAGCCGACCTCTTG
TGGCCCGTGGTTCTGGTCTCGGGGTTTATCGTGGGCGTGCAGTGGATGAT
CCATGCCCGATTCAAGCCCGCTTCGCAGCGGTCCGCCATGACGGGATACT
TTGCGGTGGCTGGCATGAGCTCCGCCTTTTTCCTGGCTTCGAGAGGGGAG
TTGGCCAAGGTGTTTCGCTCCCTAGACGCAGCCATGGCGACCGACCATTC
GCCCCCGTTGGGGGAGCTCCTGGCCGAGGGAGCCGACCTCTTGTGGCCCG
TGGTTCTGGTCTCGGGGTTTATCGTGGGCGTGCAGTGGATGATCCATGCC
CGATTCAAGCCCGCTTCGCAGCGGTCCGCCATGACGGGATACTTTGCGGT
GGCTGGCATGAGCTCCGCCTTTTTCCTGGCTTCGAGAGGGGAGTTGGCCA
AGGCCTGGGACCACGTCTCTGAGTACGACGACCAGGCCAAGTATCTCTTC
ACGGTGGTCACTGTAGCAGCCGCTTACTTCCTCTTCGCCTGGGACCACGT
CTCTGAGTACGACGACCAGGCCAAGTATCTCTTCACGGTGGTCACTGTAG
CAGCCGCTTACTTCCTCTTC
back to top