prot_S-ischiensis_contig9.20804.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20804.1
Unique Nameprot_S-ischiensis_contig9.20804.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length234
Homology
BLAST of mRNA_S-ischiensis_contig9.20804.1 vs. uniprot
Match: A0A6H5KPL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.370e-13
Identity = 61/166 (36.75%), Postives = 83/166 (50.00%), Query Frame = 0
Query:   80 NIMLAPRAGSGVGVGPSFSLRAGA-VGRHEVPSLVYISNS-----SRADQRMLPSPDSHLTVESAG-DGAVSIMSPRGHTGSLRFGCGDRPDSGSLSVYQGRQADE-DRLVLGLQASPTRLVASAAGHLGVGHFPSDLGAAFPRDPAAVFHV---IGLPNVLQGEG 234
            +++LAP AGSGVG+G  FS R  A      +P+L+Y++N+     S   QRM PS D+ + +ES+G D  VS++SPRG              SG L V    +    D LVL L +SP R+V  A G  G+G  P       P   +A  HV   + LP V    G
Sbjct: 1062 HVLLAPGAGSGVGIGRGFSSRHLARAAAGTIPTLLYVTNATDHPTSHQRQRMAPSLDALVAMESSGGDAGVSVLSPRG--------------SGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGIGAVPDADATGVPPQLSAALHVFAAVSLPTVAAPSG 1213          
BLAST of mRNA_S-ischiensis_contig9.20804.1 vs. uniprot
Match: D7FMV2_ECTSI (Similar to kinesin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV2_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.730e-5
Identity = 57/175 (32.57%), Postives = 74/175 (42.29%), Query Frame = 0
Query:   66 GAGTVGIRLTTQQS-NIMLAPRAGSGVGVGPSFSLRAGAVGRHEVPSLVYISNSSRADQRMLPSPDSHLTVESAGDGA-VSIMSPRGHTGSLRFGCGDRPDSGSLSVYQGRQADE-DRLVLGLQASPTRLVASAAGHLGVGHFPSDLGAAFPRDPAAVFHV---IGLPNVLQGEG 234
            G G  G+ L  ++  +++LAP AGS    G  FS       RH   +    S S+   + ML    S L    AG  A +      G   ++RFGC   P SG L V    +    D LVL L +SP R+V  A G  GVG  P       P   +A  HV   + LP V    G
Sbjct: 1116 GKGHNGLGLGQEEGGHVLLAPGAGSXXXXGRGFS------SRHLASAAAVTSGSAGLPRSML----SLLWSPRAGAQACLCFHLEEGSRSAVRFGCEGLPYSGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGVGAVPDADATGAPTQLSAALHVFAAVPLPTVAASSG 1280          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPL0_9PHAE6.370e-1336.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV2_ECTSI1.730e-532.57Similar to kinesin-related protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..234
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3412628..3416275 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20804.1mRNA_S-ischiensis_contig9.20804.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 3412628..3416275 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20804.1 ID=prot_S-ischiensis_contig9.20804.1|Name=mRNA_S-ischiensis_contig9.20804.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp
NAAGPVGLSAAAAAVAAAAAAAGAGLSLAARGAANISATEDMRLETAAQT
LLQSGRGVLVTTTDPGAGTVGIRLTTQQSNIMLAPRAGSGVGVGPSFSLR
AGAVGRHEVPSLVYISNSSRADQRMLPSPDSHLTVESAGDGAVSIMSPRG
HTGSLRFGCGDRPDSGSLSVYQGRQADEDRLVLGLQASPTRLVASAAGHL
GVGHFPSDLGAAFPRDPAAVFHVIGLPNVLQGEG
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