mRNA_S-ischiensis_contig9.20804.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20804.1
Unique NamemRNA_S-ischiensis_contig9.20804.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20804.1 vs. uniprot
Match: A0A6H5KPL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.370e-13
Identity = 61/166 (36.75%), Postives = 83/166 (50.00%), Query Frame = 1 
Query:  238 NIMLAPRAGSGVGVGPSFSLRAGA-VGRHEVPSLVYISNS-----SRADQRMLPSPDSHLTVESAG-DGAVSIMSPRGHTGSLRFGCGDRPDSGSLSVYQGRQADE-DRLVLGLQASPTRLVASAAGHLGVGHFPSDLGAAFPRDPAAVFHV---IGLPNVLQGEG 702
            +++LAP AGSGVG+G  FS R  A      +P+L+Y++N+     S   QRM PS D+ + +ES+G D  VS++SPRG              SG L V    +    D LVL L +SP R+V  A G  G+G  P       P   +A  HV   + LP V    G
Sbjct: 1062 HVLLAPGAGSGVGIGRGFSSRHLARAAAGTIPTLLYVTNATDHPTSHQRQRMAPSLDALVAMESSGGDAGVSVLSPRG--------------SGGLEVRHHLEGPGGDTLVLELASSPGRVVGDARGRWGIGAVPDADATGVPPQLSAALHVFAAVSLPTVAAPSG 1213
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPL0_9PHAE6.370e-1336.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3412628..3416275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size703
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20804.1prot_S-ischiensis_contig9.20804.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3412628..3416275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.5897124-CDS-S-ischiensis_contig9:3412627..34128001622817369.5897124-CDS-S-ischiensis_contig9:3412627..3412800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412628..3412800 -
1695741062.389921-CDS-S-ischiensis_contig9:3412627..34128001695741062.389921-CDS-S-ischiensis_contig9:3412627..3412800Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3412628..3412800 -
1622817369.6033206-CDS-S-ischiensis_contig9:3413879..34140721622817369.6033206-CDS-S-ischiensis_contig9:3413879..3414072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3413880..3414072 -
1695741062.401046-CDS-S-ischiensis_contig9:3413879..34140721695741062.401046-CDS-S-ischiensis_contig9:3413879..3414072Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3413880..3414072 -
1622817369.6164424-CDS-S-ischiensis_contig9:3414968..34151841622817369.6164424-CDS-S-ischiensis_contig9:3414968..3415184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3414969..3415184 -
1695741062.4116948-CDS-S-ischiensis_contig9:3414968..34151841695741062.4116948-CDS-S-ischiensis_contig9:3414968..3415184Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3414969..3415184 -
1622817369.6303365-CDS-S-ischiensis_contig9:3416155..34162751622817369.6303365-CDS-S-ischiensis_contig9:3416155..3416275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3416156..3416275 -
1695741062.4222775-CDS-S-ischiensis_contig9:3416155..34162751695741062.4222775-CDS-S-ischiensis_contig9:3416155..3416275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3416156..3416275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20804.1

>prot_S-ischiensis_contig9.20804.1 ID=prot_S-ischiensis_contig9.20804.1|Name=mRNA_S-ischiensis_contig9.20804.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=234bp
NAAGPVGLSAAAAAVAAAAAAAGAGLSLAARGAANISATEDMRLETAAQT
LLQSGRGVLVTTTDPGAGTVGIRLTTQQSNIMLAPRAGSGVGVGPSFSLR
AGAVGRHEVPSLVYISNSSRADQRMLPSPDSHLTVESAGDGAVSIMSPRG
HTGSLRFGCGDRPDSGSLSVYQGRQADEDRLVLGLQASPTRLVASAAGHL
GVGHFPSDLGAAFPRDPAAVFHVIGLPNVLQGEG
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mRNA from alignment at S-ischiensis_contig9:3412628..3416275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20804.1 ID=mRNA_S-ischiensis_contig9.20804.1|Name=mRNA_S-ischiensis_contig9.20804.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3648bp|location=Sequence derived from alignment at S-ischiensis_contig9:3412628..3416275- (Schizocladia ischiensis KU_0333)
AATGCAGCAGGCCCGGTGGGACTGTCCGCGGCGGCGGCGGCGGTGGCGGC
GGCTGCGGCGGCGGCTGGGGCGGGCTTGAGCCTCGCGGCACGGGGCGCGG
CGAATATCTCCGCCACCGAGGTGAGGCTGGCTTTGATGTGATGTGATGTG
GTGCGATTGGTCTCTAGAATGCAGTTGTTTGACAAGAAGACAAACAAGCG
AGTGGGAAAGAGGAGGTATCCCTACTGCTGTTGTTTGGCATCACATCACA
TTATTTCTGCATCGCTGAGGTGCGGCTGGTTTTGATGCGATATGATGTGA
TGCGATGGGTCTCTAGAATGCAGTTTGTTTTTTGTTTGGCATCACATCAC
ATTATTTCTGTGTCGCTGAGGTGGGGATGATTATGATGTGATGTGATGTG
ATGTGATGCGATGTGATGCGATTGGTTGTCTAGAACGCCGCGCCAAGAAT
TGCTCGCGAGTTCCGGGCCCCGTCCCAAAATTTTCCCGGGGGGCCTCATC
AGAAGAAGCCCCAACAGTGTTGGGCGGCGGGGGGGGCACGAGATCTTCAG
CTCTCCAAGAATTTCTACTCGTACTGTAGCAACTTGCCGCCGCACCGTGT
CTCTGCCCGATAGCTTGTAAAACCCCTACTCCACTGCTATTCTTTCCCTC
CCGCTTTCACCCTTCCTTTTCTTTATTTTCTGCTCTGTATTCCCTGATAA
TGAAGTCAGGTGAACACGGGCTTCCCGGGGTGGGTCCCTGAGCTCGCATA
AGTAGGGACACCTCTTCTTTCCCGCACCCTTGTTATCTTCTTGCAAAAAA
CTTGCCACGGTGGCGCCGTGTCTCTGCCCAATAACTTATAAGATCCCTAG
TCCACTCTTGCTCTTTCCCTCCCGCGTTCCCCCTCCCTTTTCTTTATTTT
TTGCTCTGTATTCCCTGCGAGTGAAGTCGGGTGAAAGGAGGGGCTTCCGG
GGGTGGGGCCCTGAACTCGCGTAAAGTAGGGACACCTCTTCTTTGACAGT
TCTTTCCCCCTCGCTTGTTGATCTTCTTGCCAAAAAGAAAACTTGCCGCG
GCACCGCGCCTCTGCCCGACAACTTATAACGAACGCCGCAGGACATGCGC
CTGGAGACCGCCGCCCAGACCCTCCTACAATCGGGCAGGGGCGTCCTGGT
CACCACCACCGACCCCGGGGCGGGCACTGTGGGCATCCGCCTCACCACGC
AGCAGTCCAACATCATGCTGGCGCCACGTGCGGGGTCTGGGGTGGGCGTT
GGCCCGTCGTTCTCCCTGCGGGCGGGCGCGGTGGGCCGGCACGAGGTCCC
GAGCTTGGTGGGTGGTGTGGGTCTGATTGTACGCGATATGACGTGATGTG
ATGTGACGTGACATCGGACTGCGTAGAGTGAATGTGTGTGTGATGTGATA
TGATGTGATGCGGAGGGGTTGGCGGGTGGCGTGGGTGCGATGTGATGTGA
TATCGTGTCGTGTGATGTGATGTGATATCATGTGATGTGATGTCATGTGG
CCACCTCCTCCTCCTCCTCCTCCTCCTCCATCAAAAACACACAAACAAAA
GAAAATACTCCCAAGTCAGCTGCTGCACACTTGCAGTACAGCTCTACCGC
GCTGCCTACGCTGCACCTACACCTGCATCAGGTGTACATATGTAATACAC
GACAGTATTTGTCTTGTCTTGCGACACAACCTTGCGTGCAATAACACCTA
TGGCAGGTGTATATCAGCATCGCTGTGCTCTCCTCAAGAACATACAAACA
GAAGAACAATTCGAGGTCAGCTGCAGCGCACTTCCCCCTCCCCCGCGCGG
CACACTTTCGTACCTACCGCAGGTGTACATCAGCAACTCCTCGCGGGGCA
GACCAGCGCATGCTGCCCTCGCCGGACTCTCCTCACAAACGTACAAACAG
AAGAACACTTTGAAGTCAGCTGCTGCACAACACTTACAGCTCTACCCCCC
TGCGCCACACCTACACCTACCCCAGGTGTACATATGTACTACTAGTACAG
CAATTGGCTTGTCTTGCGACATAACCTTGCGTGCAACAATACCTGCCCAC
GGCAGGTGTACATCAGCAACTCCTCGCGGGCAGACCAGCGCATGCTCCCC
TCGCCAGACTCTCCTCAAAAACATACAAACAGATGAACACTTCGAAGTCA
GCTGCAGCACACATACCCCTCCCCGGCACGGCACACTTACCAACCTACGA
CAGGTGTACATCAGCAACTCTTCCCGTGCGGACCAGCGCATGCTCCCCTC
GCCGGACTCGCACCTGACCGTGGAGTCGGCCGGCGACGGCGCGGTCTCCA
TCATGTCCCCTCGCGGGCACACGGGCAGCCTGCGCTTCGGGTGCGGCGAC
CGCCCGGACAGCGGCTCCCTCTCCGTGTATCAGGGGCGGCAAGCGGGTGG
GTAGAATCAGTGATGGAATATCTAAGCAAATCAACCTATTTAACGACAGT
ACTCATCTACTTCTTGTATATCTACCGCTTTGGGTGTGGCGACCACCCGG
ACAGCGGCTCCCTCTCTGTGTATCAGGGGCGGCAAGTGGGTGGGTAGCTT
AGAATGAACCAGTGATGGAATATCGAGATGATGTGATGTCACACTACTGT
GCATTAGACTGCACATCACATCACATCACATCACATCAACCGGGGCGCCA
TCTTACCTAGTGATGGCGCATCGATCAGTAGATAGTTTCGGGCTCAAGTG
ATTTCGTGTGTGGCGATACTAACTATTGTACCTCGAAGTATTTGGATTTC
ATGTGGGTCAACTATCGAATATCGACTATTGATAGATATATACTTTGAAG
CAGATCGGTCCTGTCGATAGATAGGTTGATTCGCTTAGATGTTCCATCAC
TGGAATGAACCAAGGGGCCCGGAACTTGCAGGGAATGGAGGGTACTCGAT
CGGAAATACGCAAAACAGTGTGTAGAAAATAGAACTTCCTCACGAAGTGT
GACATTGAGTGTGCTCGCAGATATTGATGCAGCTTGGTGTAAAACTGCAG
AGCAGTAGTGGAAACTGATCTTATCCCGGGCCCTCACCCCACGAGCGCAC
AGGTTACCCCTATGAAGCTCCCCTGTCAAGGCCACGCACACCGCATGCAC
GTATGCAAGCAATCACACACGCAGGCATACACACACACACATGAGCGCGC
ACACGTAGACACACACACATGCAAATACACTTACTCCACACACATACACG
CATAACCACATGCGCGCTTACACACACACACACACACGCACTCCTGCCCC
CCGCTTGCGCGCTTGCACACACGTACACACACACACACATTCGCACACGC
ACACACACACGCACACACACACACACACACACACGAACACACACACATAC
ACACACACATACACACACACACACGAAAACACACACACGCACACACACAC
ACGCACACGCACACGCCCAAGCACGCACACACACACGCCCCCCCACCCCC
CCCCCACATACACACACACACACAGACGAAGACAGGCTGGTGCTGGGCCT
GCAAGCCAGCCCCACCCGCCTGGTTGCCTCAGCAGCCGGCCACCTGGGCG
TGGGCCACTTTCCCAGTGACCTAGGTGCTGCATTTCCCAGAGATCCAGCC
GCGGTCTTCCACGTGATTGGTCTGCCAAACGTCCTCCAAGGCGAAGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3412628..3416275-

>mRNA_S-ischiensis_contig9.20804.1 ID=mRNA_S-ischiensis_contig9.20804.1|Name=mRNA_S-ischiensis_contig9.20804.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1404bp|location=Sequence derived from alignment at S-ischiensis_contig9:3412628..3416275- (Schizocladia ischiensis KU_0333)
AATGCAGCAGGCCCGGTGGGACTGTCCGCGGCGGCGGCGGCGGTGGCGGC
GGCTGCGGCGGCGGCTGGGGCGGGCTTGAGCCTCGCGGCACGGGGCGCGG
CGAATATCTCCGCCACCGAGAATGCAGCAGGCCCGGTGGGACTGTCCGCG
GCGGCGGCGGCGGTGGCGGCGGCTGCGGCGGCGGCTGGGGCGGGCTTGAG
CCTCGCGGCACGGGGCGCGGCGAATATCTCCGCCACCGAGGACATGCGCC
TGGAGACCGCCGCCCAGACCCTCCTACAATCGGGCAGGGGCGTCCTGGTC
ACCACCACCGACCCCGGGGCGGGCACTGTGGGCATCCGCCTCACCACGCA
GCAGTCCAACATCATGCTGGCGCCACGTGCGGGGTCTGGGGTGGGCGTTG
GCCCGTCGTTCTCCCTGCGGGCGGGCGCGGTGGGCCGGCACGAGGTCCCG
AGCTTGGACATGCGCCTGGAGACCGCCGCCCAGACCCTCCTACAATCGGG
CAGGGGCGTCCTGGTCACCACCACCGACCCCGGGGCGGGCACTGTGGGCA
TCCGCCTCACCACGCAGCAGTCCAACATCATGCTGGCGCCACGTGCGGGG
TCTGGGGTGGGCGTTGGCCCGTCGTTCTCCCTGCGGGCGGGCGCGGTGGG
CCGGCACGAGGTCCCGAGCTTGGTGTACATCAGCAACTCTTCCCGTGCGG
ACCAGCGCATGCTCCCCTCGCCGGACTCGCACCTGACCGTGGAGTCGGCC
GGCGACGGCGCGGTCTCCATCATGTCCCCTCGCGGGCACACGGGCAGCCT
GCGCTTCGGGTGCGGCGACCGCCCGGACAGCGGCTCCCTCTCCGTGTATC
AGGGGCGGCAAGCGGGTGTACATCAGCAACTCTTCCCGTGCGGACCAGCG
CATGCTCCCCTCGCCGGACTCGCACCTGACCGTGGAGTCGGCCGGCGACG
GCGCGGTCTCCATCATGTCCCCTCGCGGGCACACGGGCAGCCTGCGCTTC
GGGTGCGGCGACCGCCCGGACAGCGGCTCCCTCTCCGTGTATCAGGGGCG
GCAAGCGGACGAAGACAGGCTGGTGCTGGGCCTGCAAGCCAGCCCCACCC
GCCTGGTTGCCTCAGCAGCCGGCCACCTGGGCGTGGGCCACTTTCCCAGT
GACCTAGGTGCTGCATTTCCCAGAGATCCAGCCGCGGTCTTCCACGTGAT
TGGTCTGCCAAACGTCCTCCAAGGCGAAGGTACGAAGACAGGCTGGTGCT
GGGCCTGCAAGCCAGCCCCACCCGCCTGGTTGCCTCAGCAGCCGGCCACC
TGGGCGTGGGCCACTTTCCCAGTGACCTAGGTGCTGCATTTCCCAGAGAT
CCAGCCGCGGTCTTCCACGTGATTGGTCTGCCAAACGTCCTCCAAGGCGA
AGGT
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