prot_S-ischiensis_contig9.20787.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20787.1
Unique Nameprot_S-ischiensis_contig9.20787.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length193
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Match: A0A6H5JWD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.420e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  127 YKLPTSLLPMGIWLGDADFQVFDIPDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC 193
            +KL  SLLP+GIW   ++   FDI  +WK+++L+R  +PPPYRKLK NLY  ++ K  V  +E+P C
Sbjct:  186 FKLSKSLLPLGIWPSSSESGAFDIAPEWKASLLKRYENPPPYRKLKANLYEDSSLKGLVPVDEIPLC 252
[Close]
BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.570e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:  127 YKLPTSLLPMGIWLGDADFQVFDIPDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC 193
            +KL  SLLP+GIW    + + FDI  +WK+++L+R  +PPPYRKLK NLY  ++ K  V  +E+P C
Sbjct:  220 FKLSKSLLPLGIWPSSGESEAFDIAPEWKASLLKRYENPPPYRKLKANLYEDSSLKGLVPVDEIPLC 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWD3_9PHAE3.420e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN51_ECTSI5.570e-1347.76Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3213721..3214994 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20787.1mRNA_S-ischiensis_contig9.20787.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 3213721..3215026 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20787.1 ID=prot_S-ischiensis_contig9.20787.1|Name=mRNA_S-ischiensis_contig9.20787.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=193bp
MAPVRSQRVRNREDRRKLELERQQHEAEEKAQGAEALAEQPRREERKLQE
KVVAEATPAALATATQGKARAGSKHSRDDCCNRGGGEVVAGGGRTKASRR
AGPGSGPPLGAVKTALVAAVPGRQEPYKLPTSLLPMGIWLGDADFQVFDI
PDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC
back to top