mRNA_S-ischiensis_contig9.20787.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20787.1
Unique NamemRNA_S-ischiensis_contig9.20787.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Match: A0A6H5JWD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.350e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  411 YKLPTSLLPMGIWLGDADFQVFDIPDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC 611
            +KL  SLLP+GIW   ++   FDI  +WK+++L+R  +PPPYRKLK NLY  ++ K  V  +E+P C
Sbjct:  186 FKLSKSLLPLGIWPSSSESGAFDIAPEWKASLLKRYENPPPYRKLKANLYEDSSLKGLVPVDEIPLC 252
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BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 7.300e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  411 YKLPTSLLPMGIWLGDADFQVFDIPDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC 611
            +KL  SLLP+GIW    + + FDI  +WK+++L+R  +PPPYRKLK NLY  ++ K  V  +E+P C
Sbjct:  220 FKLSKSLLPLGIWPSSGESEAFDIAPEWKASLLKRYENPPPYRKLKANLYEDSSLKGLVPVDEIPLC 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWD3_9PHAE4.350e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN51_ECTSI7.300e-1347.76Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3213721..3215026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size611
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20787.1prot_S-ischiensis_contig9.20787.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3213721..3214994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.3190124-CDS-S-ischiensis_contig9:3213720..32138611622817369.3190124-CDS-S-ischiensis_contig9:3213720..3213861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3213721..3213861 -
1695741062.187055-CDS-S-ischiensis_contig9:3213720..32138611695741062.187055-CDS-S-ischiensis_contig9:3213720..3213861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3213721..3213861 -
1622817369.3328938-CDS-S-ischiensis_contig9:3214321..32146121622817369.3328938-CDS-S-ischiensis_contig9:3214321..3214612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3214322..3214612 -
1695741062.2056952-CDS-S-ischiensis_contig9:3214321..32146121695741062.2056952-CDS-S-ischiensis_contig9:3214321..3214612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3214322..3214612 -
1622817369.3448288-CDS-S-ischiensis_contig9:3214847..32149941622817369.3448288-CDS-S-ischiensis_contig9:3214847..3214994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3214848..3214994 -
1695741062.2200675-CDS-S-ischiensis_contig9:3214847..32149941695741062.2200675-CDS-S-ischiensis_contig9:3214847..3214994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3214848..3214994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817369.3574219-UTR-S-ischiensis_contig9:3214994..32150261622817369.3574219-UTR-S-ischiensis_contig9:3214994..3215026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3214995..3215026 -
1695741062.238137-UTR-S-ischiensis_contig9:3214994..32150261695741062.238137-UTR-S-ischiensis_contig9:3214994..3215026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3214995..3215026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20787.1

>prot_S-ischiensis_contig9.20787.1 ID=prot_S-ischiensis_contig9.20787.1|Name=mRNA_S-ischiensis_contig9.20787.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=193bp
MAPVRSQRVRNREDRRKLELERQQHEAEEKAQGAEALAEQPRREERKLQE
KVVAEATPAALATATQGKARAGSKHSRDDCCNRGGGEVVAGGGRTKASRR
AGPGSGPPLGAVKTALVAAVPGRQEPYKLPTSLLPMGIWLGDADFQVFDI
PDDWKSNVLRRNAHPPPYRKLKGNLYRCAAWKTCVGGEEVPQC
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mRNA from alignment at S-ischiensis_contig9:3213721..3215026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20787.1 ID=mRNA_S-ischiensis_contig9.20787.1|Name=mRNA_S-ischiensis_contig9.20787.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1306bp|location=Sequence derived from alignment at S-ischiensis_contig9:3213721..3215026- (Schizocladia ischiensis KU_0333)
GTCGCGGGGACGCTCCAGCTGGGAGGCCGGCGATGGCTCCGGTGAGGAGT
CAACGCGTACGAAACAGGGAGGACCGCCGGAAGCTGGAGCTGGAGCGGCA
GCAACATGAGGCCGAAGAGAAGGCCCAGGGAGCGGAGGCGCTTGCGGAGC
AGCCCCGCCGTGAGGAGAGGAAGCTCCAGGTAGGACAGGCTTGGGCATAT
TTGACCAGACTCGGACGTCGGGAGAGGGCTGGTCCTGGGACAGGACTGGT
CTTCCAAATGTGCAGCGTCGAGAGAGCTTCCATGCATCCGGTTCGCGAGA
GGTTGCCCCCAAAACGTGGCGTATCGCCCCCAAACTCAAAAAGCGACCAA
CCATGTCTTTTCGCCCAAAGCCATACCCTTCCACGGTCCCCCGCCCCTCC
ATTTGGCTCCGCAGGAAAAGGTCGTTGCCGAGGCCACACCGGCGGCGCTG
GCAACTGCCACACAGGGCAAGGCGCGTGCTGGGTCCAAACACTCGCGGGA
CGACTGCTGCAATCGGGGCGGAGGGGAAGTAGTAGCGGGTGGAGGCCGCA
CGAAAGCGTCTCGTCGAGCGGGACCAGGGTCAGGACCGCCGCTGGGGGCG
GTCAAGACTGCGCTGGTGGCCGCAGTGCCTGGGCGCCAGGAGCCGTACAA
GCTGCCGACAAGCCTGTTGCCGATGGGAATCTGGCTCGGAGATGCGGACT
TCCAGGTGGGAATGGCGCCGTCCCCTTTTTTGCATCATTTTGATAGCCGA
CCAGGTGCCAAGGTCTCGGCCAATGCCGCCCGCACGAGCCCAAAGTATGT
CGATGTCAGGCAACAGTGACTTCAACTGCACAACAGTTCATTGTCACTGG
GCTGACGTCCCTCTGCCGTACTTCGAAGCGCCACGTTTTTTGTTGAGCAC
GCCGCGGGGGTGAGCGGGGGTGGGGGTTGGCAACCTGGAGGCCCTGCTCT
CCCCATGTCGGGCATGCACTTGCCCTGCACTTGCCCTCGAAGACAACACG
CAGGCACGCAAGCACGCTCATTTCGACACACACACACACACACAATCACA
CATGCATGCACGCGCGGCGCACAAAACACCTCACCTGCCCTGCCCTGTTG
TGCCCTGCATGCATATTCCCTTCCCCCTGCCCCGCCCCGCCGGCCCTGCC
CTTCGCCTTGCACAGGTGTTTGACATCCCCGATGACTGGAAGAGCAATGT
GCTGCGGCGCAATGCGCACCCGCCCCCTTACCGCAAGCTCAAGGGGAACC
TGTACCGGTGTGCAGCCTGGAAGACGTGCGTGGGGGGTGAGGAGGTGCCC
CAGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3213721..3215026-

>mRNA_S-ischiensis_contig9.20787.1 ID=mRNA_S-ischiensis_contig9.20787.1|Name=mRNA_S-ischiensis_contig9.20787.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1158bp|location=Sequence derived from alignment at S-ischiensis_contig9:3213721..3215026- (Schizocladia ischiensis KU_0333)
ATGGCTCCGGTGAGGAGTCAACGCGTACGAAACAGGGAGGACCGCCGGAA
GCTGGAGCTGGAGCGGCAGCAACATGAGGCCGAAGAGAAGGCCCAGGGAG
CGGAGGCGCTTGCGGAGCAGCCCCGCCGTGAGGAGAGGAAGCTCCAGATG
GCTCCGGTGAGGAGTCAACGCGTACGAAACAGGGAGGACCGCCGGAAGCT
GGAGCTGGAGCGGCAGCAACATGAGGCCGAAGAGAAGGCCCAGGGAGCGG
AGGCGCTTGCGGAGCAGCCCCGCCGTGAGGAGAGGAAGCTCCAGGAAAAG
GTCGTTGCCGAGGCCACACCGGCGGCGCTGGCAACTGCCACACAGGGCAA
GGCGCGTGCTGGGTCCAAACACTCGCGGGACGACTGCTGCAATCGGGGCG
GAGGGGAAGTAGTAGCGGGTGGAGGCCGCACGAAAGCGTCTCGTCGAGCG
GGACCAGGGTCAGGACCGCCGCTGGGGGCGGTCAAGACTGCGCTGGTGGC
CGCAGTGCCTGGGCGCCAGGAGCCGTACAAGCTGCCGACAAGCCTGTTGC
CGATGGGAATCTGGCTCGGAGATGCGGACTTCCAGGAAAAGGTCGTTGCC
GAGGCCACACCGGCGGCGCTGGCAACTGCCACACAGGGCAAGGCGCGTGC
TGGGTCCAAACACTCGCGGGACGACTGCTGCAATCGGGGCGGAGGGGAAG
TAGTAGCGGGTGGAGGCCGCACGAAAGCGTCTCGTCGAGCGGGACCAGGG
TCAGGACCGCCGCTGGGGGCGGTCAAGACTGCGCTGGTGGCCGCAGTGCC
TGGGCGCCAGGAGCCGTACAAGCTGCCGACAAGCCTGTTGCCGATGGGAA
TCTGGCTCGGAGATGCGGACTTCCAGGTGTTTGACATCCCCGATGACTGG
AAGAGCAATGTGCTGCGGCGCAATGCGCACCCGCCCCCTTACCGCAAGCT
CAAGGGGAACCTGTACCGGTGTGCAGCCTGGAAGACGTGCGTGGGGGGTG
AGGAGGTGCCCCAGTGCGTGTTTGACATCCCCGATGACTGGAAGAGCAAT
GTGCTGCGGCGCAATGCGCACCCGCCCCCTTACCGCAAGCTCAAGGGGAA
CCTGTACCGGTGTGCAGCCTGGAAGACGTGCGTGGGGGGTGAGGAGGTGC
CCCAGTGC
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