prot_S-ischiensis_contig87.20222.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig87.20222.1
Unique Nameprot_S-ischiensis_contig87.20222.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length127
Homology
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BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.770e-20
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 0 
Query:   50 VYPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 126
            ++PA YVP DG++YC +AKVA AEW++ LRWM+G+ DW    + G +HD+ +NGIP L  +  + I+ ++NDD W++
Sbjct:    1 MHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDW----DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLK 73
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BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.930e-19
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 
Query:   47 ARWV--------YPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 126
            ARW+        +PA YVP DG++YC +AKVA AEW++ LRWM+G+ DW    + G +HD+ +NGIP L  +  + I+ ++NDD W++
Sbjct:  155 ARWMRVRSSGAMHPAMYVPGDGMIYCPIAKVACAEWRKTLRWMLGIPDW----DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLK 238
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BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: D8LPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.250e-12
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:   59 DGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 126
            +G++YC +AKVASAEWKR+LRWMVG+EDW     +  LH   +NG+  L +  ++ I   L  D++ R
Sbjct:   69 EGIIYCPIAKVASAEWKRSLRWMVGIEDWMGNHTN--LHSAGKNGLERLQEWGLEGITWALESDRYFR 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2B9_ECTSI3.770e-2046.75Similar to dermatan 4-sulfotransferase-1 n=1 Tax=E... [more]
A0A6H5JC58_9PHAE2.930e-1944.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPX9_ECTSI2.250e-1245.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..126
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.568
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:29611..33079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20222.1mRNA_S-ischiensis_contig87.20222.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig87 29369..33079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig87.20222.1 ID=prot_S-ischiensis_contig87.20222.1|Name=mRNA_S-ischiensis_contig87.20222.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MGALRSLLCAFLGVGAVVGFGGAAYVNEPARALGDVQPAQGFVVEDARWV
YPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKA
RNGIPHLYDQPVQRIQEILNDDKWVR*
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