mRNA_S-ischiensis_contig87.20222.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig87.20222.1
Unique NamemRNA_S-ischiensis_contig87.20222.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.460e-19
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 3 
Query:  390 VYPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 620
            ++PA YVP DG++YC +AKVA AEW++ LRWM+G+ DW    + G +HD+ +NGIP L  +  + I+ ++NDD W++
Sbjct:    1 MHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDW----DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLK 73
[Close]
BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.590e-18
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 3 
Query:  381 ARWV--------YPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 620
            ARW+        +PA YVP DG++YC +AKVA AEW++ LRWM+G+ DW    + G +HD+ +NGIP L  +  + I+ ++NDD W++
Sbjct:  155 ARWMRVRSSGAMHPAMYVPGDGMIYCPIAKVACAEWRKTLRWMLGIPDW----DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLK 238
[Close]
BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Match: D8LPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.070e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  417 DGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKARNGIPHLYDQPVQRIQEILNDDKWVR 620
            +G++YC +AKVASAEWKR+LRWMVG+EDW     +  LH   +NG+  L +  ++ I   L  D++ R
Sbjct:   69 EGIIYCPIAKVASAEWKRSLRWMVGIEDWMGNHTN--LHSAGKNGLERLQEWGLEGITWALESDRYFR 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig87.20222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2B9_ECTSI4.460e-1946.75Similar to dermatan 4-sulfotransferase-1 n=1 Tax=E... [more]
A0A6H5JC58_9PHAE3.590e-1844.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPX9_ECTSI2.070e-1145.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig87contigS-ischiensis_contig87:29369..33079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog2880.D7G2B9
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EWIE@1,2SYBY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size623
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig87.20222.1prot_S-ischiensis_contig87.20222.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig87 29611..33079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.2773438-UTR-S-ischiensis_contig87:29368..296101622817351.2773438-UTR-S-ischiensis_contig87:29368..29610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 29369..29610 +
1695741048.4242063-UTR-S-ischiensis_contig87:29368..296101695741048.4242063-UTR-S-ischiensis_contig87:29368..29610Schizocladia ischiensis KU_0333UTRS-ischiensis_contig87 29369..29610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.2879531-CDS-S-ischiensis_contig87:29610..298141622817351.2879531-CDS-S-ischiensis_contig87:29610..29814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 29611..29814 +
1695741048.4348493-CDS-S-ischiensis_contig87:29610..298141695741048.4348493-CDS-S-ischiensis_contig87:29610..29814Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 29611..29814 +
1622817351.2999089-CDS-S-ischiensis_contig87:30644..307131622817351.2999089-CDS-S-ischiensis_contig87:30644..30713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 30645..30713 +
1695741048.4488502-CDS-S-ischiensis_contig87:30644..307131695741048.4488502-CDS-S-ischiensis_contig87:30644..30713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 30645..30713 +
1622817351.3162332-CDS-S-ischiensis_contig87:32971..330791622817351.3162332-CDS-S-ischiensis_contig87:32971..33079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 32972..33079 +
1695741048.4613698-CDS-S-ischiensis_contig87:32971..330791695741048.4613698-CDS-S-ischiensis_contig87:32971..33079Schizocladia ischiensis KU_0333CDSS-ischiensis_contig87 32972..33079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig87.20222.1

>prot_S-ischiensis_contig87.20222.1 ID=prot_S-ischiensis_contig87.20222.1|Name=mRNA_S-ischiensis_contig87.20222.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
MGALRSLLCAFLGVGAVVGFGGAAYVNEPARALGDVQPAQGFVVEDARWV
YPATYVPEDGLVYCGVAKVASAEWKRALRWMVGMEDWKDAQEDGLLHDKA
RNGIPHLYDQPVQRIQEILNDDKWVR*
back to top

mRNA from alignment at S-ischiensis_contig87:29369..33079+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig87.20222.1 ID=mRNA_S-ischiensis_contig87.20222.1|Name=mRNA_S-ischiensis_contig87.20222.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3711bp|location=Sequence derived from alignment at S-ischiensis_contig87:29369..33079+ (Schizocladia ischiensis KU_0333)
GCTGCGGCTTCTGCGCGGGGGTGGAGCTCCCAGGTTGGGTGGGCGAAATC
TTGGCCGGGTTCGCGTGAAAGCCTCAGCGGAAAGGGCAGGGCATTTGCAC
CGCAAACGCACTCTGCTTGAGGACGCGGGAGGGAAATAGAGCTCGCTCGC
GCGCCAGCGCACATTGCTCGGAAGGCAGGGCAGCCAGGACCCAATTGCAC
ATCCAGAGGCCGCGAAATCGTTTTATTTTAGTTGTGGTTGCTATGGGTGC
ACTACGCAGTCTTCTGTGCGCGTTCCTGGGCGTCGGGGCTGTGGTCGGGT
TTGGCGGGGCGGCTTACGTCAACGAGCCCGCAAGAGCCCTGGGGGACGTC
CAACCGGCCCAGGGCTTTGTCGTGGAAGATGCGAGATGGGTTTACCCGGC
GACCTACGTCCCGGAGGACGGGCTCGTGTACTGTGGCGTGGCCAAGGTCA
GCGGTGAAAAGGGGGCCGAAGACGTGCCGCATTGTCGCACTTCCGAGTAC
CCTGCACTTCGACTTGCGTTTCCAGCCGTAGTTTATCGTTACGTGCGTTT
TTGTGCACGCACGCTGACGGGAATGCGCCTGCCGCACATGCCCGTTCAAG
CACGTGCAACGCTGAGCCCCCAAACGCCCCCACGAAGCATTCGAGGATAT
ATCGGTGGGGGAATGTATCCTGTTGTGCAGTCCGTACTTGTACGCGTTTG
TACAAAGTACGTACAATAGTGTCCCACAGTAGTATGCACTGTACAGTATC
TGTATGAGTACTGTTTGCAAGAACATTTGCACTGCCCAGCTGCGCCCAGT
AGCGCTCGGGTCTGGCCGATGCACGCCTCGTTAGCACGTCTGGCAGTGCA
TTAGTGCGTTGGTGTTTTCTTAGCTCTGAATCTTTGGATGCGACAAAGCG
GGGGGTGTGTGGCTGTTGGTCCCCCAATTCCCCCCCCTATCACCAAATGC
AGTTCATGCAGTTCCCGCGCGTATGGACGCGTGTATATTCCGCCTTCGTG
TGCTCTCCTGGTCTTATCATAAAGCGCAATGAAAACTGTCTCCCCCCCCC
CCATGGATGGGCATATGTATGGCGTGCTTGTAGAACGCGCACAGAGGTGT
ACATTAGTGCGCTTGCTGCCTGGCAACAACTCAAACGCCGATTGACAAAC
TTGTCATGCTGGTTGATTTGCACGGAAAGGTGGCGAGTGCGGAGAGGTGT
ACTTTAGTGCGCTTGCTGCCTGTGAACAAGTCAAACGTCGATTGTCGTGC
TGGTTGATTTGCACGTACTTGTTAAGGTGGCCAGCGCGGAGTGGAAGCGG
GCCCTGCGGTGGATGGTGGGCATGGAGGACTGGAAGGACGCACAGGTGAT
GTGTGATGTGATGTGACGTGATGTGGCGTGGTGTGGCATGATGTGCTGCG
ATGTACCTAAACCTGTCTAATCGAACAATCGATCGAAGGCCTGTCGGTTT
TCGATTATTTTTTCATGGACGCCGGAACACGGCTAAACCACGGTCATGGC
CCCGGTGGGGCTGAGGGCGGGGTCCTGGTTTAGAGCATGGACACGGCTGG
CGACCAGTCTCGTGATAATGCGATAGAAGATGCACAGCATGAGTTCGAGT
TTCCGCTTCTCAGGCGACGGGATCCATTCCTGTTGGCCCAGGGGACAGAG
CCGCCGAGAAAGCGCGCATCGTAGGCGGCTGCACAACTTGAGGTATCTGG
CTTCAGACGGGAGCAGAACCGCGCCGCCCGCCCGCGGCTCTCACAGTCGC
TTTACCATGTCGCCATGTCGACTTCTGAGTGGAACAAGAAGAGTCAAGAA
GTGGCGGGACGTTCACAACTACCCTTTGGCGTGGTGGGCCGGGCCATAGC
CTACAACTAGCCCCGTTTGGCCAAGCTTGCCCGCCGCGTTCTTGTCTCGC
CGGCAACACAGCCAGACTCGGAGAGACTGTTCTCTGATGCCGGGCTCACG
GTCACGAAAAAGCGCAACCGGTTGGAGATCGTGGCGCTTCTCACTTGCAT
GAGAAACACATGGTTTAACATGGAGAAGTGGGAGGCGGCCCGCAGAGCGT
AGTTTCAGAACGCCGGGCCACCCTGTGGGGGGCGCCCGCTCTCATTTAGG
GGTGGGGGTGAGGGGGGCAGCCTGGTGCCCCCGTTATTGCGTGCGCAATG
CCGCGTCACGGTAACAGAAGGTACTTGGTGGGCCAGGGGGGGGCTCTGAG
CATGAGGGGGCGGGTAGGCAAGGACTGTACTTGGTGGGCCAGGGGGGGGC
TCTGAGCATGAGGGGGCGGGTAGGCAAGGACTGTGCTGCCGTGTTTCACA
TGATCGAAGCACTTGCTTGTCATAGCCTGCAGTTACGGTAGTACCGTACT
GGGCAGGCCAGGGGGGGGCGGGTGCAACGAGTGTTGGTTTGTGTATTGAA
TGCCGGTATGACGAAAAATGACACCAAGGCTACGTTTTTTAAGGAGTAAC
ACTACGTACTGTAGTGTGGATTGATTGACCTTCGAGGTTTGTGCCAGTGC
GGCGCTTACCTCGGCTCTTCTGAATTATTCAAGTATTTTTTTTAGATGGC
ATTGTCGGCGACCTAGCGGTCGGGATCGATCATCCTGATTGTTCCTACCG
TGACCGTTAGGGTGCCGGTGCGCCCAAGAGCAACTCTGCGAAGAGAGACT
CACACAAGCACTCGCCAACGGATACGCTTTGTCGTAGCCTAGCGAGCGGC
CCCTCATCCGGCTTGCCGATGCCAAGGCATCATGGCATTCCGGGCTTGGC
CAGTGCACGGCCTGGCCGGTGCAAACCCGGCATGCTCCGTCCCGGCCTAG
TTGGGATGCAAGAGTCCGTGGCTTAATAGCTGCTCCTGTCAGAGGGCAAA
CCCGAAGTTTCGACATAGGGCTGTCGGCATTGCATGCACGGTTATGGCGC
AAGACAAACCAACACGTACATACTTTTTTTTCGATATGATTGCGTGTCTA
GCCCATGGATGGCATCAAAAGTGTCTGAACTATCCTCCACTACTGACGTG
ACCATTGATGGTGATGCTCAGGTAAATTGGCGGCCGCCTCGCTTCGATTT
ACTGTACCGTGTGACCCCGGGAAGGTTGTTGCACGCTCATTAAATCCCTG
TAGTTCCAAGTACCTCTTGGAAAAGGGCTGTTGACCGACAAAAACGGGTT
CAGGCGTCAGATAACTGGGTTCCAAACCAATTCACGGGTTGCGAAACCAA
TTAATCGGTTGCCAAACCAATTAATCGGTTGCAGAATCAATTAACAGTTA
AAACAGATCGAATCGAACCTGGCCAAACCAGTTATCAGTTAAATCGATAC
GGCCTACCAGTTCACAACTCTAGGAATTGCATATGTACTCACGTTGTGCT
TGTCGTAGTCCCGGGAAAGTCTTTTTTAAAATTTCTGCACGATGAGGCCG
ATGTGGCGTGATGTGATGTCATGCCATGTCATGCGGTGCGGGCAAACCGT
TTTATGCGTAATGAGACTGATGCGATGTGATGCGATGCAGGGAGACGGTT
TGCTGCACGACGAGGCTGATGTGATGTGATATGATGCAATGTGATGCAGG
AGGTTGGTTTGCTGCACGACGAGGCTGATGTGGTGTGATGTGATGTGATG
CAGGAAGACGGTTTGCTGCACGACAAGGCACGGAACGGCATCCCTCACCT
ATACGACCAGCCCGTGCAAAGGATACAGGAAATACTCAACGACGACAAGT
GGGTCCGGTGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig87:29369..33079+

>mRNA_S-ischiensis_contig87.20222.1 ID=mRNA_S-ischiensis_contig87.20222.1|Name=mRNA_S-ischiensis_contig87.20222.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig87:29369..33079+ (Schizocladia ischiensis KU_0333)
ATGGGTGCACTACGCAGTCTTCTGTGCGCGTTCCTGGGCGTCGGGGCTGT
GGTCGGGTTTGGCGGGGCGGCTTACGTCAACGAGCCCGCAAGAGCCCTGG
GGGACGTCCAACCGGCCCAGGGCTTTGTCGTGGAAGATGCGAGATGGGTT
TACCCGGCGACCTACGTCCCGGAGGACGGGCTCGTGTACTGTGGCGTGGC
CAAGATGGGTGCACTACGCAGTCTTCTGTGCGCGTTCCTGGGCGTCGGGG
CTGTGGTCGGGTTTGGCGGGGCGGCTTACGTCAACGAGCCCGCAAGAGCC
CTGGGGGACGTCCAACCGGCCCAGGGCTTTGTCGTGGAAGATGCGAGATG
GGTTTACCCGGCGACCTACGTCCCGGAGGACGGGCTCGTGTACTGTGGCG
TGGCCAAGGTGGCCAGCGCGGAGTGGAAGCGGGCCCTGCGGTGGATGGTG
GGCATGGAGGACTGGAAGGACGCACAGGTGGCCAGCGCGGAGTGGAAGCG
GGCCCTGCGGTGGATGGTGGGCATGGAGGACTGGAAGGACGCACAGGAAG
ACGGTTTGCTGCACGACAAGGCACGGAACGGCATCCCTCACCTATACGAC
CAGCCCGTGCAAAGGATACAGGAAATACTCAACGACGACAAGTGGGTCCG
GTGAGAAGACGGTTTGCTGCACGACAAGGCACGGAACGGCATCCCTCACC
TATACGACCAGCCCGTGCAAAGGATACAGGAAATACTCAACGACGACAAG
TGGGTCCGGTGA
back to top