prot_S-ischiensis_contig8.19767.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19767.1
Unique Nameprot_S-ischiensis_contig8.19767.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length90
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.740e-24
Identity = 54/87 (62.07%), Postives = 70/87 (80.46%), Query Frame = 0 
Query:    1 DGTRRLYKLDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNH-ITSRGVRALLAVLEDQLELFRAMQEDASVDDGILSFLYSVKLD 86
            DG +RLYKLDLR+  L DAHVE LA+AL++LP+VRK+DLRGN  +T + + AL ++L+ Q+ELFR +Q DAS+ D  LSFLYSVKLD
Sbjct:   60 DGGKRLYKLDLRRTHLTDAHVEALAQALQELPVVRKLDLRGNEAVTIQALNALNSLLKGQVELFRLVQADASLADSSLSFLYSVKLD 146
[Close]
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Match: A0A2R5G477_9STRA (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G477_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:    9 LDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNHITSRGVRALLAVLEDQ 59
            L LRK  L DAH+  L  AL++ PI+ ++DLR N ++ RGV+AL+A+L++Q
Sbjct:   68 LTLRKVDLTDAHLRSLVAALRREPILARLDLRDNRLSDRGVKALIALLDEQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI1.740e-2462.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A2R5G477_9STRA1.230e-649.02Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 3..30
e-value: 5.9
score: 11.7
coord: 31..58
e-value: 1.3
score: 16.3
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 5..61
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..83
e-value: 9.8E-11
score: 43.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3774868..3779606 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19767.1mRNA_S-ischiensis_contig8.19767.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 3774868..3779606 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19767.1 ID=prot_S-ischiensis_contig8.19767.1|Name=mRNA_S-ischiensis_contig8.19767.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
DGTRRLYKLDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNHITSRGVR
ALLAVLEDQLELFRAMQEDASVDDGILSFLYSVKLDDNPV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf