mRNA_S-ischiensis_contig8.19767.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19767.1
Unique NamemRNA_S-ischiensis_contig8.19767.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.740e-24
Identity = 54/87 (62.07%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 DGTRRLYKLDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNH-ITSRGVRALLAVLEDQLELFRAMQEDASVDDGILSFLYSVKLD 258
            DG +RLYKLDLR+  L DAHVE LA+AL++LP+VRK+DLRGN  +T + + AL ++L+ Q+ELFR +Q DAS+ D  LSFLYSVKLD
Sbjct:   60 DGGKRLYKLDLRRTHLTDAHVEALAQALQELPVVRKLDLRGNEAVTIQALNALNSLLKGQVELFRLVQADASLADSSLSFLYSVKLD 146
[Close]
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Match: A0A2R5G477_9STRA (Protein phosphatase 1 regulatory subunit 7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G477_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   25 LDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNHITSRGVRALLAVLEDQ 177
            L LRK  L DAH+  L  AL++ PI+ ++DLR N ++ RGV+AL+A+L++Q
Sbjct:   68 LTLRKVDLTDAHLRSLVAALRREPILARLDLRDNRLSDRGVKALIALLDEQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI1.740e-2462.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A2R5G477_9STRA1.230e-649.02Protein phosphatase 1 regulatory subunit 7 n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3774868..3779606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2e-21
Seed eggNOG ortholog2880.D8LGJ5
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_001830.1
Exons4
Model size270
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19767.1prot_S-ischiensis_contig8.19767.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3774868..3779606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817302.5769305-CDS-S-ischiensis_contig8:3774867..37749271622817302.5769305-CDS-S-ischiensis_contig8:3774867..3774927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3774868..3774927 +
1695741009.9258752-CDS-S-ischiensis_contig8:3774867..37749271695741009.9258752-CDS-S-ischiensis_contig8:3774867..3774927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3774868..3774927 +
1622817302.587765-CDS-S-ischiensis_contig8:3778136..37782171622817302.587765-CDS-S-ischiensis_contig8:3778136..3778217Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3778137..3778217 +
1695741009.9400156-CDS-S-ischiensis_contig8:3778136..37782171695741009.9400156-CDS-S-ischiensis_contig8:3778136..3778217Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3778137..3778217 +
1622817302.5981634-CDS-S-ischiensis_contig8:3778610..37786811622817302.5981634-CDS-S-ischiensis_contig8:3778610..3778681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3778611..3778681 +
1695741009.954828-CDS-S-ischiensis_contig8:3778610..37786811695741009.954828-CDS-S-ischiensis_contig8:3778610..3778681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3778611..3778681 +
1622817302.6104593-CDS-S-ischiensis_contig8:3779548..37796061622817302.6104593-CDS-S-ischiensis_contig8:3779548..3779606Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3779549..3779606 +
1695741009.9678254-CDS-S-ischiensis_contig8:3779548..37796061695741009.9678254-CDS-S-ischiensis_contig8:3779548..3779606Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3779549..3779606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19767.1

>prot_S-ischiensis_contig8.19767.1 ID=prot_S-ischiensis_contig8.19767.1|Name=mRNA_S-ischiensis_contig8.19767.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
DGTRRLYKLDLRKAQLKDAHVEVLAEALKQLPIVRKVDLRGNHITSRGVR
ALLAVLEDQLELFRAMQEDASVDDGILSFLYSVKLDDNPV
back to top

mRNA from alignment at S-ischiensis_contig8:3774868..3779606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19767.1 ID=mRNA_S-ischiensis_contig8.19767.1|Name=mRNA_S-ischiensis_contig8.19767.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4739bp|location=Sequence derived from alignment at S-ischiensis_contig8:3774868..3779606+ (Schizocladia ischiensis KU_0333)
GACGGCACGCGCCGACTGTACAAGCTGGACCTCCGCAAGGCGCAGCTGAA
GGATGCGCACGTAAGTACGAGCCGCGCGCGTGGGGGGAGGGGGGGGTGGC
GAGCGGTGTGGGGGCGGCAGAGACCGAGCGTTCCGCTTGTATGGCCACCA
GCTACTTCGTACTTACAGTAGCTATCCACAACGTCCTGGCGCAGGGTTGG
CACTTAACCCCTAAGTGGTGCCCTTTTAGGCCCTTAATTAGAGGTAATTA
GGGGTAATTAGACCTAAAATGAAGGCTAATTAGGCCCTAATTAACCCCTA
AGTGCCAACCCTGTCCGGCGAATCGACGGCACACTACTCGAACGTGCTGG
GGCCCCGAAGAGAAACGGCCGAACCGGGCAGCCCTGCCACCGACTGCAGG
GGGGGATAGGACGCCAACAATCGGCGTGGAGGGAGTAGGTTCAAGTTTTT
TTTTCTTAAGGGTGCAGTAACTTCCTGTGCGATAGGCCTTTGCTGCCTCA
GCGGGAAGAGTACTTGCGTATTGCGCAGCCCTGTCCCAGATGTTTGTGTG
TGCCGGGGTTTACGGCTCTGAGGATTGCTTTCCTTAGTTTTTTTCTCTCC
ATGCGGCACTCTGCGGAGGTAGCTGTTGCACTCTCGCCGCTGCTTGACAG
TGGCGGCACGGATGGGTGTAGATAGGTAGAGCACTCGTGCTGACAGTGGT
AGGGCGGGTTGAAGGAGGGGTGGGCTGGGACGGGACTCTTGAGAGTACCT
GACGATGTGGCACGCGATGTTGCTTGTCAACGCTGCGCCGAAGGAGGAGG
AGGAGGAGGAGGAGGACGACGGGGCTGAGGCCATAATCCGCAACGGGCCG
GCCTTTGCGTATATACGCTACCCTGGCCAAGAATGCTGCCGCTGCGCTCC
CCTAGAGCAGTTCTGGCGGAATTTCATTGCTTTCTCGGGTCCGCCACCGG
ACGCGGTTTTACTGCCCGGTTTTGTATGCTTTTTGATGGCGGTTGCTGCT
TGCGGCGGTAAGTTACCGCCAAAGGGCGCGCGTAACGGCAGTCTCGAGGA
GGTTTACTTACCCCTGAAGCACGTAGAGTGGGCACTAAGTATCGAAAGTG
TTTTGGGAGTATTGGAACATATATGGTCGGGCCAAGGGCTTGGTGCGACG
TATACCACGGTATATATATATATGTGTACTCACCGTACTGTATGGCGGTA
CAGCAGTACGAGTACCGTGGGCACTGTACGAGTGCAGCACAGTACAGTAC
AGTACAGTAGTACGGGCGCTGTACGCGCACTGTGCTGTACTGTACTGTAC
AGTAGCGTGAGAACTCGGAGGCGTGCATCACTTGAGGCGCTGTGAGCCGC
CATGAAAAACTTTGGCCAATGTATCATCGAGTCTTTAGCGAAAGTGATCG
AAAATTTAGCAGGTTTGTCCCGCTCCGGAGATTAAAAAAGTAAAGTACTG
TAGCCATGGCACCTCGCTCGGTAGATATTTACTTAGACAGTTCCCTGGAG
GCGTTGCACACTTGGAACTACGATCGTATAGTACGAGTAGCACACTTGTC
GAGACTTTAGCAAGTCCATCCAAGACGTTAAGTAGCCAGTTTGTCCCGCC
CCGGGGAAGAGCGCTCTAGCAACCTAGCTAACCTCCCTTGGCAGTAGTAT
ATACGAGCAGCGTTTGCCAGACACCCGGAAGTAGCGGGGCGCCGGCCGGC
CCGGCGACGCCCACGGGCGCATCGGTGCGGGGCGCACCAACCCGATATGC
GACACCTCGGGGCGCGCTTGAGCCCCGCAGGGCGAAATTTGGGGCGCTCC
ACCAGGTAAAGGGGCTCCTGGGCAACATTTCTGGGGCGCAACGCAATTGT
TTTCTTCGAACTATTGGCTACTTTCGGTGGCATGCAAGTAAATCCGGGCC
CCGTCCCGAACTGGCGGCCTCACGAGGAGTCAGCCCTTCTGCTAGTGTGA
TGTGATGTGATGTGATGTGTACTCTAATTTGCTGTGGTGTGACATCACAT
CACATCACATCACATCGAAAGTGGGGGCCTCGCGAGAGGAGCAAACCCTT
CTGCCGCTCACATGGCAAGAAGTGCGTACAAGTAGCGGCCGCCCCTCTCT
TTCTTGCCTTGTCGTTTTTCTTCCTGCTGATGCGACGTGATGTGATGTGA
TGTCAAACTACTTGTATGGTAAAATGAAGTACACATCACATGATGTGACG
TGATGTCAAATGATGTGATGTGATGTCAAACTACAGTAGGTGGTACTAGT
TAGTTCCTTTGGCCTTTAAGAGACATAATTGAGTACGCTCTTTCCTAACT
TTTTGTTCAACTCACCGAATAATTGGCCGCTTCATCTGAAGGCATCACGT
CAAAACCTTGTACCTCAGCCTTCAGAACAAATCTCAAGTTGAAGGTCAGC
ACATTGAAGTTGAAGGTTTTTCGGAACCTACTGGTGGCCCCGACTGTACA
GTACAATAGAGTGCACATCACGTCACATGATGTGACGTGATGTCAAATTA
TGTGATGTGATGTCAAACTACAGCACGGTAGAGTGCACATCACGTCGCAT
CACAAGGTGTACTCCGTACATGTATGCCCTCCCTTCCCCGCCTCTCTCCT
TCTTGCCTTGTTGTTTGTTTTTCTTCCCTTCTGATGTGACGCGATTCGAT
GTCAAACCATGCGATGTGATGTCAAACTACAGTACAATACAGTACACGTC
ACATCACATCACAAAGTGCGTACATGTATACCCTCCCTTCCCCTCCCCTC
TCCTTCTTCCCTTGTTTTTCTTCTTGCCTTGCGAGGGAATGAAGGGTTGG
CTCTTCTGTTGAGTCCTGTTTTGATGCGATATGATGTGATGTGATGTGAT
GTGATGCCACACTAGAGCAAATTAGAGTGCACATCACATCACATCGCATA
ACCTACTATAACGAGGGAATGAAGGGTCAACGCTTCTGCTGAGTCCTGTT
TTGGGGCGAGCCTTTTGGCGCGGGGCCTGGAACGCGCCGCTTACCAACCA
ACCAAACAGGGAAGAAGTGACGCCTGGCAATCTGCAACTACTGATGACGG
TCATTTATGTACCCTGCAACGAGGTACAATCTCACATGTGTGTGGTTGAG
TGTTCTCGTATTGGTGGCTATCCCATTTAAGAGTTGAGTGTTCTCGTATT
AGTGATATCACATCAAAGAACTAATGCTGATGACGGCGACGAATATGCTC
AACGAATGAATGAATCAGTTCTTAATACCTGATGACGGTCAAAATACGAT
CAACGAATGAATGAACCAGGTGGAGGTCCTGGCCGAGGCGCTCAAGCAGC
TGCCCATCGTGAGGAAGGTGGACCTACGGGGAAACCACATCACCTCGCGG
GTGAGCACGACACATTAGTGATGTGATGTGTACTCTAATGTGCAGTAGTT
TGACATCACACAACATCACATCACATTGGTGATTGGTGTGGTGTGATGTG
ATGTGCACGCTAATGTGCAGTAGTTTGACATCACATCACATCACATCACG
CCGGCGGGCCAGCATGGAGTGTACTGGGCCGACGGTCACTGCCATGCACA
GGACGGGGTGTGATAGTAGTAGTAGTGATGACAACCCTGTCCAGCACAAG
TGACACCACGAACTTAACTCTTCCCAGAACGGAGGAATCTCCCTCCCAGC
CCCTGGCCCAAGGTGTCACTTATCATCTGCTTGCCCTTGCTCTTGTGTGC
ATGTGCTTACATGTGTGCGTGTATATGTATGTATGTATGGCAGGGTGTCC
GGGCCCTTCTGGCGGTTCTGGAGGATCAGCTGGAGCTATTCCGGGCCATG
CAGGAGGACGCCAGGTGATTTATTGTGATGCGATGTGACGTGATGTGTTG
TGTACTCTAGATGAACTGTAGTTTGACATCACATCGCATCATATGTATCA
CACTGCGCCAGTTTTTAAACAGTGCACATCACACGTCGGTTTGAACTGCA
GTGTGACATCACATTGCATCGCACCGCATGCGATGTCAAACTACAGTAGA
TTACGGTACACATCACATCAGTTCGAACTGTAGTTTGACATCGCACCGCA
TCGCATCGCGTGTGATGCCAAGCTACAGGAAATTAGTGTGCACATCACAT
CACATCACATCTCATCGCATCAGTGTCCCGTCGCCCTCAAAAGGGGTTAA
GTACTTCGAAGTGCAGTATAACCCAGTTGCACACGGAGCGATGGGGATGT
CCTTCAAGCAGCGCTCGCATTGCGCGTGCTGGTGGTCCCGAGACCGCCGT
TCGAAACACACCATGTAGTTGGGAGAATGAGTTTCGAAGAGCCCAAGTAC
CTAGACGGGAGAATGAGTTTCGAGCAGTCCAAGTAGTTGGGCGAATGAGT
TTCGAAGGACCCATGTACTGTAGTCGGAGATTGAGTTTCGAAGAACCCAT
GTTGTTGGGAGAATGAGTTTCGAGCAGTCCAAGCAGTTGGGAGGATGAGT
TTCGAAGAACCCAAGTGGTTGGGAGAATGAGTTTGGAGAATCCAAGTACT
TCGAAGTAGTTGGGAGAATGAGTTTCGAAGAATCCAAGTGGTTGGGAGAA
TGAGTTTCGAGCAGTTCAAGCAGTTGGGAGAATGATTTTCGAAGAACCCA
AGTACTTGTGTGGGCAGATGCACAAGCACCTTGCTGTTTCGGCGAGTACG
GCGACTCTCCCCCCCACGGTGTCACCAACAGTGTCGACGACGGCATCCTC
AGCTTCCTCTACTCCGTCAAGCTGGATGACAACCCTGTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3774868..3779606+

>mRNA_S-ischiensis_contig8.19767.1 ID=mRNA_S-ischiensis_contig8.19767.1|Name=mRNA_S-ischiensis_contig8.19767.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig8:3774868..3779606+ (Schizocladia ischiensis KU_0333)
GACGGCACGCGCCGACTGTACAAGCTGGACCTCCGCAAGGCGCAGCTGAA
GGATGCGCACGACGGCACGCGCCGACTGTACAAGCTGGACCTCCGCAAGG
CGCAGCTGAAGGATGCGCACGTGGAGGTCCTGGCCGAGGCGCTCAAGCAG
CTGCCCATCGTGAGGAAGGTGGACCTACGGGGAAACCACATCACCTCGCG
GGTGGAGGTCCTGGCCGAGGCGCTCAAGCAGCTGCCCATCGTGAGGAAGG
TGGACCTACGGGGAAACCACATCACCTCGCGGGGTGTCCGGGCCCTTCTG
GCGGTTCTGGAGGATCAGCTGGAGCTATTCCGGGCCATGCAGGAGGACGC
CAGGGTGTCCGGGCCCTTCTGGCGGTTCTGGAGGATCAGCTGGAGCTATT
CCGGGCCATGCAGGAGGACGCCAGTGTCGACGACGGCATCCTCAGCTTCC
TCTACTCCGTCAAGCTGGATGACAACCCTGTCTGTCGACGACGGCATCCT
CAGCTTCCTCTACTCCGTCAAGCTGGATGACAACCCTGTC
back to top