prot_S-ischiensis_contig8.19527.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig8.19527.1
Unique Nameprot_S-ischiensis_contig8.19527.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length190
Homology
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BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.200e-24
Identity = 78/185 (42.16%), Postives = 99/185 (53.51%), Query Frame = 0 
Query:    1 MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRALGQQYAAIGGXXXXXXXXXXVGAPRDDRGGAPHEGAVFTWRQVQEEXXXXXXXXXXXXXXAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFLSGGLAAPSIAASLSAAGYAAASAISYVAPSTALWL 185
            +R+L A + G   DWL +A   V+R+Q   V+   YDAR+RAA+KRAVR LG +                                  +W+QV                  A   +  I+DGDQNK + V GR WKVGLAAAGGG LLFLSGG+AAPS+ ASLSA G+AA +++SYVAPS   WL
Sbjct:  396 VRELAASVGGFPEDWLGEAFGMVVRRQ---VEDAVYDARARAAMKRAVRLLGGR---------------------------------VSWKQVA--------VTEQELAALAQDDDHRIQDGDQNKEAAVSGRYWKVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGFAAVNSVSYVAPSLGAWL 536
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BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Match: D7FHT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.720e-17
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 0 
Query:    1 MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRALGQQYAAIGGXXXXXXXXXXVGAPRDDRGGAPHEGAVFTWRQVQEEXXXXXXXXXXXXXXAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFLSGGLAAPSIAASLSAAGY 168
            +R+L A + G   DWL +A   V+R+Q   V+   YDAR+RAA+KRAVR LG +                                  +W+QV                  A      I+DGD+NK + V GR WKVGLAAAGGG LLFLSGG+AAPS+ ASLSA G+
Sbjct:  452 VRELAASVGGFPEDWLGEAFGMVVRRQ---VEDAVYDARARAAIKRAVRLLGGR---------------------------------VSWKQVA--------VTEQELAALAQDDNDRIQDGDKNKEAAVSGRYWKVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGF 575
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC2_9PHAE2.200e-2442.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT7_ECTSI1.720e-1739.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007941Protein of unknown function DUF726PANTHERPTHR17920UNCHARACTERIZEDcoord: 29..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 187..190
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 160..164
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..186
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 139..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1951293..1952863 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19527.1mRNA_S-ischiensis_contig8.19527.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig8 1951293..1952863 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig8.19527.1 ID=prot_S-ischiensis_contig8.19527.1|Name=mRNA_S-ischiensis_contig8.19527.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=190bp
MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRA
LGQQYAAIGGSSGGGGGGGGVGAPRDDRGGAPHEGAVFTWRQVQEEEQSI
ALALAAAAASAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFL
SGGLAAPSIAASLSAAGYAAASAISYVAPSTALWLAGGGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007941DUF726