mRNA_S-ischiensis_contig8.19527.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19527.1
Unique NamemRNA_S-ischiensis_contig8.19527.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.200e-24
Identity = 78/185 (42.16%), Postives = 99/185 (53.51%), Query Frame = 1 
Query:    1 MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRALGQQYAAIGGXXXXXXXXXXVGAPRDDRGGAPHEGAVFTWRQVQEEXXXXXXXXXXXXXXAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFLSGGLAAPSIAASLSAAGYAAASAISYVAPSTALWL 555
            +R+L A + G   DWL +A   V+R+Q   V+   YDAR+RAA+KRAVR LG +                                  +W+QV                  A   +  I+DGDQNK + V GR WKVGLAAAGGG LLFLSGG+AAPS+ ASLSA G+AA +++SYVAPS   WL
Sbjct:  396 VRELAASVGGFPEDWLGEAFGMVVRRQ---VEDAVYDARARAAMKRAVRLLGGR---------------------------------VSWKQVA--------VTEQELAALAQDDDHRIQDGDQNKEAAVSGRYWKVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGFAAVNSVSYVAPSLGAWL 536
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BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Match: D7FHT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.720e-17
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:    1 MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRALGQQYAAIGGXXXXXXXXXXVGAPRDDRGGAPHEGAVFTWRQVQEEXXXXXXXXXXXXXXAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFLSGGLAAPSIAASLSAAGY 504
            +R+L A + G   DWL +A   V+R+Q   V+   YDAR+RAA+KRAVR LG +                                  +W+QV                  A      I+DGD+NK + V GR WKVGLAAAGGG LLFLSGG+AAPS+ ASLSA G+
Sbjct:  452 VRELAASVGGFPEDWLGEAFGMVVRRQ---VEDAVYDARARAAIKRAVRLLGGR---------------------------------VSWKQVA--------VTEQELAALAQDDNDRIQDGDKNKEAAVSGRYWKVGLAAAGGGVLLFLSGGVAAPSVTASLSAVGF 575
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC2_9PHAE2.200e-2442.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT7_ECTSI1.720e-1739.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:1951293..1952863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF726
Ec32 orthologEc-07_006740.1
Exons3
Model size571
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19527.1prot_S-ischiensis_contig8.19527.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 1951293..1952863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817286.4359543-CDS-S-ischiensis_contig8:1951292..19514901622817286.4359543-CDS-S-ischiensis_contig8:1951292..1951490Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1951293..1951490 -
1695740996.6572716-CDS-S-ischiensis_contig8:1951292..19514901695740996.6572716-CDS-S-ischiensis_contig8:1951292..1951490Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1951293..1951490 -
1622817286.4490962-CDS-S-ischiensis_contig8:1952209..19525001622817286.4490962-CDS-S-ischiensis_contig8:1952209..1952500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1952210..1952500 -
1695740996.6692877-CDS-S-ischiensis_contig8:1952209..19525001695740996.6692877-CDS-S-ischiensis_contig8:1952209..1952500Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1952210..1952500 -
1622817286.4626558-CDS-S-ischiensis_contig8:1952782..19528631622817286.4626558-CDS-S-ischiensis_contig8:1952782..1952863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1952783..1952863 -
1695740996.6835291-CDS-S-ischiensis_contig8:1952782..19528631695740996.6835291-CDS-S-ischiensis_contig8:1952782..1952863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 1952783..1952863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19527.1

>prot_S-ischiensis_contig8.19527.1 ID=prot_S-ischiensis_contig8.19527.1|Name=mRNA_S-ischiensis_contig8.19527.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=190bp
MRDLCARLAGLGPDWLAKALRRVLRQQAFAVDRRGYDARSRAALKRAVRA
LGQQYAAIGGSSGGGGGGGGVGAPRDDRGGAPHEGAVFTWRQVQEEEQSI
ALALAAAAASAAHTREFAIRDGDQNKASRVPGRQWKVGLAAAGGGALLFL
SGGLAAPSIAASLSAAGYAAASAISYVAPSTALWLAGGGT
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mRNA from alignment at S-ischiensis_contig8:1951293..1952863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19527.1 ID=mRNA_S-ischiensis_contig8.19527.1|Name=mRNA_S-ischiensis_contig8.19527.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1571bp|location=Sequence derived from alignment at S-ischiensis_contig8:1951293..1952863- (Schizocladia ischiensis KU_0333)
ATGCGGGATCTCTGCGCGCGGCTGGCGGGGCTGGGGCCGGACTGGCTGGC
CAAGGCGCTGCGGAGGGTGCTGCGGCAGCAGGTGAGGAGCGCGAGGAGGG
CCGGGGGGGTAGGGCGTGCGGTCAAGGGCCTCTTGCTCTGTCTGTCTGTC
TGTCTGTCTCTCTTTCGCTCTCTCTCTCTCTCCCTCCCTCCCTCCATCTC
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCC
TCCCTCGTTCCTGTTCTCTCTCCCCCTTGCCCCCTAACCTTTCCACCCCC
CGGTCTCCCCCTCCCCCTCCCCCCCTTCCCCTCCCCCTCCCTCCCGACCC
CTTCCCCCTGCAGGCATTTGCCGTGGACCGCCGTGGGTACGACGCTCGCT
CCAGGGCAGCGCTCAAACGGGCTGTGAGGGCTCTGGGGCAGCAGTACGCC
GCCATAGGTGGCAGCAGCGGCGGCGGGGGCGGCGGAGGTGGGGTGGGGGC
TCCGCGGGACGACCGGGGCGGCGCCCCCCATGAGGGAGCCGTGTTTACGT
GGCGGCAGGTGCAGGAGGAGGAGCAGTCCATTGCTTTGGCCCTGGCGGCG
GCCGCTGCCAGCGCTGCCCACACGAGAGAGTTCGCCATCCGGGATGGGGA
CCAGGTGAGGCAGGCGTGCACGCGGGGGGGGGGACGTTGCACGCTTGTTG
TGCGCGTGCGTGTGTGTGTGCGTGTGCGTGCGTGTGCGCATGTGTGTGTG
TGTGTGTGAGTGTGTACGTGTCTTCCGTCGATGTGCCTGTGATTTGCAGT
GCGTGTTGGCCTTGGACGTCTGTGTGTGGCTGTCAATGCGTGCGTGCGTG
TCGTGTGTGTGCGCGCGCACGCCCGCGGGTGGTGTGTGCATGTTGTACCG
CTGCATGAGTTACCTACGGTACCTACTTGTCATGCAAATGCTTGGCACTG
TGTTGTGTGTGCTCGCTGCGCAGACTACAGTACCTCCCGCACCGTCGTGC
CCCGACCGACACCTACATGCTCCTCCCTCCACCCTCCTCCATCACCTCCC
CCTCCCCCTCCCATGCCACAACGAACACTCACGACAACAAAACACCCAAC
GCCCCCCCCCACCCGCCCCCCCATCACTCTCACCATCCCCTCTCCCTCCT
TTCCCCCTTCCTCCCCCCCTCCCCCTCCGCCCTACCCACCCCCTCCTCTC
TCCTCATCCTGCCCATCCCCCTCCCCCTCCCCCGCCACAACAAACACCGC
GACAACAACCCCCCACCCGCCCCCCCATCACCCTACCCACGCCCTCACCC
TCCTTTCCCCCTCCCCGCCCCCCTCCCCCGCCCCCACCACAACATTCAAC
CACGACAACCAAAACGAGAGCAGAACAAGGCCTCGCGTGTGCCGGGACGC
CAGTGGAAGGTGGGCCTCGCAGCTGCAGGGGGCGGCGCTCTCCTCTTCCT
CAGCGGCGGCCTCGCCGCCCCCTCCATCGCCGCCTCCCTCTCCGCCGCCG
GCTACGCCGCCGCCAGCGCCATCTCCTATGTCGCCCCTTCCACCGCCTTG
TGGCTCGCGGGGGGGGGGACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:1951293..1952863-

>mRNA_S-ischiensis_contig8.19527.1 ID=mRNA_S-ischiensis_contig8.19527.1|Name=mRNA_S-ischiensis_contig8.19527.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1140bp|location=Sequence derived from alignment at S-ischiensis_contig8:1951293..1952863- (Schizocladia ischiensis KU_0333)
ATGCGGGATCTCTGCGCGCGGCTGGCGGGGCTGGGGCCGGACTGGCTGGC
CAAGGCGCTGCGGAGGGTGCTGCGGCAGCAGATGCGGGATCTCTGCGCGC
GGCTGGCGGGGCTGGGGCCGGACTGGCTGGCCAAGGCGCTGCGGAGGGTG
CTGCGGCAGCAGGCATTTGCCGTGGACCGCCGTGGGTACGACGCTCGCTC
CAGGGCAGCGCTCAAACGGGCTGTGAGGGCTCTGGGGCAGCAGTACGCCG
CCATAGGTGGCAGCAGCGGCGGCGGGGGCGGCGGAGGTGGGGTGGGGGCT
CCGCGGGACGACCGGGGCGGCGCCCCCCATGAGGGAGCCGTGTTTACGTG
GCGGCAGGTGCAGGAGGAGGAGCAGTCCATTGCTTTGGCCCTGGCGGCGG
CCGCTGCCAGCGCTGCCCACACGAGAGAGTTCGCCATCCGGGATGGGGAC
CAGGCATTTGCCGTGGACCGCCGTGGGTACGACGCTCGCTCCAGGGCAGC
GCTCAAACGGGCTGTGAGGGCTCTGGGGCAGCAGTACGCCGCCATAGGTG
GCAGCAGCGGCGGCGGGGGCGGCGGAGGTGGGGTGGGGGCTCCGCGGGAC
GACCGGGGCGGCGCCCCCCATGAGGGAGCCGTGTTTACGTGGCGGCAGGT
GCAGGAGGAGGAGCAGTCCATTGCTTTGGCCCTGGCGGCGGCCGCTGCCA
GCGCTGCCCACACGAGAGAGTTCGCCATCCGGGATGGGGACCAGAACAAG
GCCTCGCGTGTGCCGGGACGCCAGTGGAAGGTGGGCCTCGCAGCTGCAGG
GGGCGGCGCTCTCCTCTTCCTCAGCGGCGGCCTCGCCGCCCCCTCCATCG
CCGCCTCCCTCTCCGCCGCCGGCTACGCCGCCGCCAGCGCCATCTCCTAT
GTCGCCCCTTCCACCGCCTTGTGGCTCGCGGGGGGGGGGACGAACAAGGC
CTCGCGTGTGCCGGGACGCCAGTGGAAGGTGGGCCTCGCAGCTGCAGGGG
GCGGCGCTCTCCTCTTCCTCAGCGGCGGCCTCGCCGCCCCCTCCATCGCC
GCCTCCCTCTCCGCCGCCGGCTACGCCGCCGCCAGCGCCATCTCCTATGT
CGCCCCTTCCACCGCCTTGTGGCTCGCGGGGGGGGGGACG
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