prot_S-ischiensis_contig110.2411.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-ischiensis_contig110.2411.1
Unique Name	prot_S-ischiensis_contig110.2411.1
Type	polypeptide
Organism	Schizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length	117

Homology

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 240 bits (613), Expect = 2.990e-77
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIAIGQ  ERGVFDLVDDWLKRDRFVF+GWSGLLLFPTAYLA+GGW TGTTFVTSWYTHGLASSYLEGCNFLTAAVS+PANSMGHSL+LLWGPEAQG+FTRWCQIGGLWTFVALHG
Sbjct:    1 MTIAIGQNQERGVFDLVDDWLKRDRFVFVGWSGLLLFPTAYLAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLILLWGPEAQGDFTRWCQIGGLWTFVALHG 117

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: Q4BVV6_CROWT (Uncharacterized protein n=1 Tax=Crocosphaera watsonii WH 8501 TaxID=165597 RepID=Q4BVV6_CROWT)

HSP 1 Score: 230 bits (587), Expect = 2.490e-76
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIA+G+ PERG FD++DDWLKRDRFVF+GWSG+LLFP AY+ALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVSSPAN+ GHSLL LWGPEAQG+FTRWCQIGGLW+FVALHG
Sbjct:    1 MTIAVGRAPERGWFDVIDDWLKRDRFVFVGWSGILLFPCAYMALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSSPANAFGHSLLFLWGPEAQGDFTRWCQIGGLWSFVALHG 117

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: T2JGV1_CROWT (Photosystem II protein D2 (PsbD) (Fragment) n=3 Tax=Cyanobacteria TaxID=1117 RepID=T2JGV1_CROWT)

HSP 1 Score: 230 bits (587), Expect = 4.900e-75
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIA+G+ PERG FD++DDWLKRDRFVF+GWSG+LLFP AY+ALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVSSPAN+ GHSLL LWGPEAQG+FTRWCQIGGLW+FVALHG
Sbjct:    4 MTIAVGRAPERGWFDVIDDWLKRDRFVFVGWSGILLFPCAYMALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSSPANAFGHSLLFLWGPEAQGDFTRWCQIGGLWSFVALHG 120

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A2G4G0P8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=7 Tax=Bacteria TaxID=2 RepID=A0A2G4G0P8_9CYAN)

HSP 1 Score: 230 bits (586), Expect = 6.300e-75
Identity = 101/117 (86.32%), Postives = 113/117 (96.58%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIA+G+ P+RG FD++DDWLKRDRFVF+GWSGLLLFPTAYLALGGWLTGTTFVTSWYTHG+ASSYLEGCNFLTAAVS+PA++MGHSLLLLWGPEAQG+F RWCQ+GGLW FVALHG
Sbjct:    1 MTIALGRAPQRGWFDILDDWLKRDRFVFVGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGIASSYLEGCNFLTAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWPFVALHG 117

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A1L6BXG8_9SYNE (Photosystem II protein D2 (Fragment) n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1L6BXG8_9SYNE)

HSP 1 Score: 227 bits (578), Expect = 2.700e-74
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0

Query:    1 MTIAIGQT-PERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIA+G+   ERG FD+VDDWLKRDRFVFIGWSGLLLFP AYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVS+PA+SMGHSLLLLWGPEAQG+FTRWCQIGGLWTFVA HG
Sbjct:    1 MTIAVGRVRQERGWFDIVDDWLKRDRFVFIGWSGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPADSMGHSLLLLWGPEAQGDFTRWCQIGGLWTFVAFHG 118

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A6M3RNZ4_9CHLO (Photosystem II protein D2 n=1 Tax=Micractinium singularis TaxID=2607981 RepID=A0A6M3RNZ4_9CHLO)

HSP 1 Score: 228 bits (580), Expect = 1.270e-73
Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 0

Query:    1 MTIAIGQTPE-RGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIAIG+T E RG FD+VDDWL+RDRFVFIGWSGLLL PTAYLALGGW TGTTFVTSWYTHGLA+SYLEGCNFLTAAVS+PANSMGHSLL LWGPEAQG+FTRWCQ+GGLWTFVALHG
Sbjct:    1 MTIAIGKTQEKRGWFDVVDDWLRRDRFVFIGWSGLLLLPTAYLALGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQLGGLWTFVALHG 118

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 231 bits (589), Expect = 1.280e-73
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIAIGQ   RG FDLVDDWLKRDRFVF+GWSGLLLFP AYLA+GGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVS+PANSMGHSLL LWGPEAQG+FTRWCQIGGLW F+ALHG
Sbjct:    1 MTIAIGQEKTRGGFDLVDDWLKRDRFVFVGWSGLLLFPCAYLAVGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHG 117

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_THEVB (Photosystem II D2 protein n=184 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_THEVB)

HSP 1 Score: 230 bits (587), Expect = 2.640e-73
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 0

Query:    1 MTIAIGQTP-ERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIAIG+ P ERG FD++DDWLKRDRFVF+GWSG+LLFP AYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVS+PANSMGHSLLLLWGPEAQG+FTRWCQ+GGLWTF+ALHG
Sbjct:    1 MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHG 118

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_PROMM (Photosystem II D2 protein n=8 Tax=Prochlorococcaceae TaxID=2881426 RepID=PSBD_PROMM)

HSP 1 Score: 229 bits (584), Expect = 7.270e-73
Identity = 100/117 (85.47%), Postives = 113/117 (96.58%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIA+G+ P+RG FD++DDWLKRDRFVF+GWSGLLLFPTAYLALGGW TGTTFVTSWYTHG+ASSYLEGCNFL+AAVS+PA++MGHSLLLLWGPEAQG+F RWCQ+GGLWTFVALHG
Sbjct:    1 MTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHG 117

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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_CYAM1 (Photosystem II D2 protein n=6 Tax=Cyanidiaceae TaxID=265316 RepID=PSBD_CYAM1)

HSP 1 Score: 229 bits (584), Expect = 7.270e-73
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 0

Query:    1 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 117
            MTIAIG+  ERG FDL+DDWLKRDRFVFIGWSGLLLFP +YLALG W TGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLL LWGPEAQG+FTRWCQIGGLWTF ALHG
Sbjct:    1 MTIAIGREQERGWFDLMDDWLKRDRFVFIGWSGLLLFPCSYLALGAWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHG 117

The following BLAST results are available for this feature:

BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot

BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBD_HETA2	2.990e-77	93.16	Photosystem II D2 protein n=340 Tax=cellular organ...	[more]
Q4BVV6_CROWT	2.490e-76	86.32	Uncharacterized protein n=1 Tax=Crocosphaera watso...	[more]
T2JGV1_CROWT	4.900e-75	86.32	Photosystem II protein D2 (PsbD) (Fragment) n=3 Ta...	[more]
A0A2G4G0P8_9CYAN	6.300e-75	86.32	Photosystem II D2 protein (Photosystem q(A) protei...	[more]
A0A1L6BXG8_9SYNE	2.700e-74	88.98	Photosystem II protein D2 (Fragment) n=3 Tax=uncla...	[more]
A0A6M3RNZ4_9CHLO	1.270e-73	88.98	Photosystem II protein D2 n=1 Tax=Micractinium sin...	[more]
PSBD_NEOYE	1.280e-73	89.74	Photosystem II D2 protein n=59 Tax=Eukaryota TaxID...	[more]
PSBD_THEVB	2.640e-73	88.14	Photosystem II D2 protein n=184 Tax=Cyanobacteria ...	[more]
PSBD_PROMM	7.270e-73	85.47	Photosystem II D2 protein n=8 Tax=Prochlorococcace...	[more]
PSBD_CYAM1	7.270e-73	89.74	Photosystem II D2 protein n=6 Tax=Cyanidiaceae Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 27..116 e-value: 1.2E-13 score: 50.9
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..117
None	No IPR available	PANTHER	PTHR33149:SF17	PHOTOSYSTEM II D2 PROTEIN	coord: 1..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 26..48
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 49..117
None	No IPR available	TMHMM	TMhelix		coord: 26..48
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 14..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-ischiensis_contig110	contig	S-ischiensis_contig110:86693..87043 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Schizocladia ischiensis KU_0333	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-ischiensis_contig110.2411.1	mRNA_S-ischiensis_contig110.2411.1	Schizocladia ischiensis KU_0333	mRNA	S-ischiensis_contig110 86658..87043 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-ischiensis_contig110.2411.1 ID=prot_S-ischiensis_contig110.2411.1|Name=mRNA_S-ischiensis_contig110.2411.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTG
TTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNF
TRWCQIGGLWTFVALHG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf