mRNA_S-ischiensis_contig110.2411.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2411.1
Unique NamemRNA_S-ischiensis_contig110.2411.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 243 bits (619), Expect = 5.830e-78
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIAIGQ  ERGVFDLVDDWLKRDRFVF+GWSGLLLFPTAYLA+GGW TGTTFVTSWYTHGLASSYLEGCNFLTAAVS+PANSMGHSL+LLWGPEAQG+FTRWCQIGGLWTFVALHG
Sbjct:    1 MTIAIGQNQERGVFDLVDDWLKRDRFVFVGWSGLLLFPTAYLAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLILLWGPEAQGDFTRWCQIGGLWTFVALHG 117
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: Q4BVV6_CROWT (Uncharacterized protein n=1 Tax=Crocosphaera watsonii WH 8501 TaxID=165597 RepID=Q4BVV6_CROWT)

HSP 1 Score: 233 bits (593), Expect = 4.760e-77
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIA+G+ PERG FD++DDWLKRDRFVF+GWSG+LLFP AY+ALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVSSPAN+ GHSLL LWGPEAQG+FTRWCQIGGLW+FVALHG
Sbjct:    1 MTIAVGRAPERGWFDVIDDWLKRDRFVFVGWSGILLFPCAYMALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSSPANAFGHSLLFLWGPEAQGDFTRWCQIGGLWSFVALHG 117
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: T2JGV1_CROWT (Photosystem II protein D2 (PsbD) (Fragment) n=3 Tax=Cyanobacteria TaxID=1117 RepID=T2JGV1_CROWT)

HSP 1 Score: 233 bits (593), Expect = 9.410e-76
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIA+G+ PERG FD++DDWLKRDRFVF+GWSG+LLFP AY+ALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVSSPAN+ GHSLL LWGPEAQG+FTRWCQIGGLW+FVALHG
Sbjct:    4 MTIAVGRAPERGWFDVIDDWLKRDRFVFVGWSGILLFPCAYMALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSSPANAFGHSLLFLWGPEAQGDFTRWCQIGGLWSFVALHG 120
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A2G4G0P8_9CYAN (Photosystem II D2 protein (Photosystem q(A) protein) (Fragment) n=7 Tax=Bacteria TaxID=2 RepID=A0A2G4G0P8_9CYAN)

HSP 1 Score: 232 bits (592), Expect = 1.210e-75
Identity = 101/117 (86.32%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIA+G+ P+RG FD++DDWLKRDRFVF+GWSGLLLFPTAYLALGGWLTGTTFVTSWYTHG+ASSYLEGCNFLTAAVS+PA++MGHSLLLLWGPEAQG+F RWCQ+GGLW FVALHG
Sbjct:    1 MTIALGRAPQRGWFDILDDWLKRDRFVFVGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGIASSYLEGCNFLTAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWPFVALHG 117
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A1L6BXG8_9SYNE (Photosystem II protein D2 (Fragment) n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1L6BXG8_9SYNE)

HSP 1 Score: 229 bits (584), Expect = 5.180e-75
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 3 
Query:   36 MTIAIGQT-PERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIA+G+   ERG FD+VDDWLKRDRFVFIGWSGLLLFP AYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVS+PA+SMGHSLLLLWGPEAQG+FTRWCQIGGLWTFVA HG
Sbjct:    1 MTIAVGRVRQERGWFDIVDDWLKRDRFVFIGWSGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPADSMGHSLLLLWGPEAQGDFTRWCQIGGLWTFVAFHG 118
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: A0A6M3RNZ4_9CHLO (Photosystem II protein D2 n=1 Tax=Micractinium singularis TaxID=2607981 RepID=A0A6M3RNZ4_9CHLO)

HSP 1 Score: 230 bits (586), Expect = 2.450e-74
Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 3 
Query:   36 MTIAIGQTPE-RGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIAIG+T E RG FD+VDDWL+RDRFVFIGWSGLLL PTAYLALGGW TGTTFVTSWYTHGLA+SYLEGCNFLTAAVS+PANSMGHSLL LWGPEAQG+FTRWCQ+GGLWTFVALHG
Sbjct:    1 MTIAIGKTQEKRGWFDVVDDWLRRDRFVFIGWSGLLLLPTAYLALGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQLGGLWTFVALHG 118
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 233 bits (595), Expect = 2.490e-74
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIAIGQ   RG FDLVDDWLKRDRFVF+GWSGLLLFP AYLA+GGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVS+PANSMGHSLL LWGPEAQG+FTRWCQIGGLW F+ALHG
Sbjct:    1 MTIAIGQEKTRGGFDLVDDWLKRDRFVFVGWSGLLLFPCAYLAVGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHG 117
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_THEVB (Photosystem II D2 protein n=184 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_THEVB)

HSP 1 Score: 233 bits (593), Expect = 5.130e-74
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 3 
Query:   36 MTIAIGQTP-ERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIAIG+ P ERG FD++DDWLKRDRFVF+GWSG+LLFP AYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLT AVS+PANSMGHSLLLLWGPEAQG+FTRWCQ+GGLWTF+ALHG
Sbjct:    1 MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHG 118
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_PROMM (Photosystem II D2 protein n=8 Tax=Prochlorococcaceae TaxID=2881426 RepID=PSBD_PROMM)

HSP 1 Score: 231 bits (590), Expect = 1.420e-73
Identity = 100/117 (85.47%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIA+G+ P+RG FD++DDWLKRDRFVF+GWSGLLLFPTAYLALGGW TGTTFVTSWYTHG+ASSYLEGCNFL+AAVS+PA++MGHSLLLLWGPEAQG+F RWCQ+GGLWTFVALHG
Sbjct:    1 MTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHG 117
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BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Match: PSBD_CYAM1 (Photosystem II D2 protein n=6 Tax=Cyanidiaceae TaxID=265316 RepID=PSBD_CYAM1)

HSP 1 Score: 231 bits (590), Expect = 1.420e-73
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 3 
Query:   36 MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNFTRWCQIGGLWTFVALHG 386
            MTIAIG+  ERG FDL+DDWLKRDRFVFIGWSGLLLFP +YLALG W TGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLL LWGPEAQG+FTRWCQIGGLWTF ALHG
Sbjct:    1 MTIAIGREQERGWFDLMDDWLKRDRFVFIGWSGLLLFPCSYLALGAWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHG 117
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBD_HETA25.830e-7893.16Photosystem II D2 protein n=340 Tax=cellular organ... [more]
Q4BVV6_CROWT4.760e-7786.32Uncharacterized protein n=1 Tax=Crocosphaera watso... [more]
T2JGV1_CROWT9.410e-7686.32Photosystem II protein D2 (PsbD) (Fragment) n=3 Ta... [more]
A0A2G4G0P8_9CYAN1.210e-7586.32Photosystem II D2 protein (Photosystem q(A) protei... [more]
A0A1L6BXG8_9SYNE5.180e-7588.98Photosystem II protein D2 (Fragment) n=3 Tax=uncla... [more]
A0A6M3RNZ4_9CHLO2.450e-7488.98Photosystem II protein D2 n=1 Tax=Micractinium sin... [more]
PSBD_NEOYE2.490e-7489.74Photosystem II D2 protein n=59 Tax=Eukaryota TaxID... [more]
PSBD_THEVB5.130e-7488.14Photosystem II D2 protein n=184 Tax=Cyanobacteria ... [more]
PSBD_PROMM1.420e-7385.47Photosystem II D2 protein n=8 Tax=Prochlorococcace... [more]
PSBD_CYAM11.420e-7389.74Photosystem II D2 protein n=6 Tax=Cyanidiaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:86658..87043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue2.2e-60
Seed eggNOG ortholog159749.K0RGG6
Preferred namepsbD
KEGG koko:K02706
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.photosynthetic electron transport in photosystem II
EggNOG OGs2CNIT@1,2QWJF@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size388
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.5083392-UTR-S-ischiensis_contig110:86657..866921622815621.5083392-UTR-S-ischiensis_contig110:86657..86692Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 86658..86692 +
1695739809.6678247-UTR-S-ischiensis_contig110:86657..866921695739809.6678247-UTR-S-ischiensis_contig110:86657..86692Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 86658..86692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.5318475-CDS-S-ischiensis_contig110:86692..870431622815621.5318475-CDS-S-ischiensis_contig110:86692..87043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 86693..87043 +
1695739809.6794965-CDS-S-ischiensis_contig110:86692..870431695739809.6794965-CDS-S-ischiensis_contig110:86692..87043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 86693..87043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2411.1prot_S-ischiensis_contig110.2411.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 86693..87043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2411.1

>prot_S-ischiensis_contig110.2411.1 ID=prot_S-ischiensis_contig110.2411.1|Name=mRNA_S-ischiensis_contig110.2411.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MTIAIGQTPERGVFDLVDDWLKRDRFVFIGWSGLLLFPTAYLALGGWLTG
TTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLLLWGPEAQGNF
TRWCQIGGLWTFVALHG
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mRNA from alignment at S-ischiensis_contig110:86658..87043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2411.1 ID=mRNA_S-ischiensis_contig110.2411.1|Name=mRNA_S-ischiensis_contig110.2411.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=386bp|location=Sequence derived from alignment at S-ischiensis_contig110:86658..87043+ (Schizocladia ischiensis KU_0333)
GTTATTGATTGCATTGTAGACTTTAGAAATAACTTATGACGATAGCAATT
GGACAAACCCCGGAACGAGGTGTATTTGATCTTGTCGATGATTGGTTGAA
GCGAGATCGTTTCGTATTTATTGGATGGTCAGGTCTCCTTTTATTTCCAA
CGGCATACTTAGCTTTAGGGGGCTGGTTAACAGGAACAACTTTTGTAACC
TCTTGGTATACCCATGGTCTAGCTTCTTCTTATTTAGAAGGATGTAACTT
CCTAACTGCTGCAGTTTCTAGTCCAGCGAATAGTATGGGCCATTCTTTAT
TACTTTTATGGGGTCCTGAAGCCCAAGGTAATTTTACAAGATGGTGTCAA
ATAGGTGGACTATGGACTTTTGTAGCATTACATGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:86658..87043+

>mRNA_S-ischiensis_contig110.2411.1 ID=mRNA_S-ischiensis_contig110.2411.1|Name=mRNA_S-ischiensis_contig110.2411.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig110:86658..87043+ (Schizocladia ischiensis KU_0333)
ATGACGATAGCAATTGGACAAACCCCGGAACGAGGTGTATTTGATCTTGT
CGATGATTGGTTGAAGCGAGATCGTTTCGTATTTATTGGATGGTCAGGTC
TCCTTTTATTTCCAACGGCATACTTAGCTTTAGGGGGCTGGTTAACAGGA
ACAACTTTTGTAACCTCTTGGTATACCCATGGTCTAGCTTCTTCTTATTT
AGAAGGATGTAACTTCCTAACTGCTGCAGTTTCTAGTCCAGCGAATAGTA
TGGGCCATTCTTTATTACTTTTATGGGGTCCTGAAGCCCAAGGTAATTTT
ACAAGATGGTGTCAAATAGGTGGACTATGGACTTTTGTAGCATTACATGG
CATGACGATAGCAATTGGACAAACCCCGGAACGAGGTGTATTTGATCTTG
TCGATGATTGGTTGAAGCGAGATCGTTTCGTATTTATTGGATGGTCAGGT
CTCCTTTTATTTCCAACGGCATACTTAGCTTTAGGGGGCTGGTTAACAGG
AACAACTTTTGTAACCTCTTGGTATACCCATGGTCTAGCTTCTTCTTATT
TAGAAGGATGTAACTTCCTAACTGCTGCAGTTTCTAGTCCAGCGAATAGT
ATGGGCCATTCTTTATTACTTTTATGGGGTCCTGAAGCCCAAGGTAATTT
TACAAGATGGTGTCAAATAGGTGGACTATGGACTTTTGTAGCATTACATG
GC
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