prot_S-ischiensis_contig107.1898.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig107.1898.1
Unique Nameprot_S-ischiensis_contig107.1898.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length98
Homology
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BLAST of mRNA_S-ischiensis_contig107.1898.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 0 
Query:   26 AGRKMYRTRPVSIVAWSDLVELLARHGTVFGAQAPHWGRNWLTAVMTMVPVVYLAVVLRIMAKRDWPGGEADG 98
            AG   YR R +  V   DLV+LLA+  T FGA+ P WG + +T ++T++P  Y+ +  R++ K +  G + DG
Sbjct:  102 AGVTRYRARLLPFVDGGDLVDLLAKQDTAFGAKDPPWGPHLITGLLTVLPFAYIGMAARVLTKSNRLGRDDDG 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1898.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS7_ECTSI1.050e-838.36AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 88..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availableTMHMMTMhelixcoord: 65..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:54607..55953 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1898.1mRNA_S-ischiensis_contig107.1898.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig107 54607..55953 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig107.1898.1 ID=prot_S-ischiensis_contig107.1898.1|Name=mRNA_S-ischiensis_contig107.1898.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=98bp
MAAARGGGGGGSPAVPASAGIGGAVAGRKMYRTRPVSIVAWSDLVELLAR
HGTVFGAQAPHWGRNWLTAVMTMVPVVYLAVVLRIMAKRDWPGGEADG
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