mRNA_S-ischiensis_contig107.1898.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig107.1898.1
Unique NamemRNA_S-ischiensis_contig107.1898.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig107.1898.1 vs. uniprot
Match: D8LSS7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   76 AGRKMYRTRPVSIVAWSDLVELLARHGTVFGAQAPHWGRNWLTAVMTMVPVVYLAVVLRIMAKRDWPGGEADG 294
            AG   YR R +  V   DLV+LLA+  T FGA+ P WG + +T ++T++P  Y+ +  R++ K +  G + DG
Sbjct:  102 AGVTRYRARLLPFVDGGDLVDLLAKQDTAFGAKDPPWGPHLITGLLTVLPFAYIGMAARVLTKSNRLGRDDDG 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig107.1898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS7_ECTSI1.050e-838.36AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig107contigS-ischiensis_contig107:54607..55953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue8e-08
Seed eggNOG ortholog2880.D8LSS7
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031967,GO:0031975,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, AAA-type, core
Ec32 orthologEc-15_002770.1
Exons2
Model size295
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.788028-CDS-S-ischiensis_contig107:54606..547651622815570.788028-CDS-S-ischiensis_contig107:54606..54765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 54607..54765 +
1695739776.9785788-CDS-S-ischiensis_contig107:54606..547651695739776.9785788-CDS-S-ischiensis_contig107:54606..54765Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 54607..54765 +
1622815570.8025806-CDS-S-ischiensis_contig107:55818..559531622815570.8025806-CDS-S-ischiensis_contig107:55818..55953Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 55819..55953 +
1695739776.9884038-CDS-S-ischiensis_contig107:55818..559531695739776.9884038-CDS-S-ischiensis_contig107:55818..55953Schizocladia ischiensis KU_0333CDSS-ischiensis_contig107 55819..55953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig107.1898.1prot_S-ischiensis_contig107.1898.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig107 54607..55953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig107.1898.1

>prot_S-ischiensis_contig107.1898.1 ID=prot_S-ischiensis_contig107.1898.1|Name=mRNA_S-ischiensis_contig107.1898.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=98bp
MAAARGGGGGGSPAVPASAGIGGAVAGRKMYRTRPVSIVAWSDLVELLAR
HGTVFGAQAPHWGRNWLTAVMTMVPVVYLAVVLRIMAKRDWPGGEADG
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mRNA from alignment at S-ischiensis_contig107:54607..55953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig107.1898.1 ID=mRNA_S-ischiensis_contig107.1898.1|Name=mRNA_S-ischiensis_contig107.1898.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1347bp|location=Sequence derived from alignment at S-ischiensis_contig107:54607..55953+ (Schizocladia ischiensis KU_0333)
ATGGCGGCGGCGAGGGGGGGGGGGGGGGGGGGGTCGCCCGCTGTTCCCGC
GTCAGCTGGAATTGGCGGTGCGGTGGCGGGCCGGAAAATGTACAGGACTC
GGCCGGTGTCCATTGTCGCCTGGTCAGACCTGGTAGAGCTGTTGGCACGC
CATGGTACGGTGAGTGCTTGTGTGTATTGTGATGTTGATGAGTATTGTGA
TATTGATCAATATTGTGATGTTAATAAGTGTTGTGATACTGATTGGTCAG
ACCTGGTTGAGCTGTTGGTACGCAACGGTATTGATGAGTATTGTGATGTT
GATAGGTATTGTGATACTGATTGGTCAGACCTGGTTGAGCTGTTGGTACG
CAACGGTACGGTGAGTGCGTATAAGAGTGTTATGATATTGACAAGTATTG
TGATGTTGATAAGTGTTGTGATACATTGATTAGCTCTTGTGATATTGATG
AGTATTGTGATAGTGAGGACACCTGCAGGCTGCGACTCTGTTGTTATATT
AGTTCAATGAATGCGAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGG
ACCTCACCAGAAACCCTTCTTTTAACCCGCAGGGCACAAAAATCAAGAAA
AGAAGCCACTAAGGAGACCAATCTGACACTGTGACCAGTGTGGGTGTTTA
ACGCAGCAGCATGACAGTGAGTGTTCACACTACAATATCCATATTGGTGG
TGGAATGTAGTATTGGTAGTATTACAATGAACAACACGGGGCGAGGCGCG
GGCCACGTCACTAGAGACCTCAGCAGTGGCCCTTCCTTAGCTCGCCAGGG
GAAATTTGTGCGGGGAAGGGGAGAAGAGGAGGGGGGGGCAAAGTGGGCAG
GGAGGAGGGGGAGGAGGAGGAGGAGGAAGAGGAGGGGGAGCGGGAGGGGG
AGGAGGAGGAGGAGGAGTAGTATTGGTAGTTGAGTTCAGTTTACAGTTTG
CAGGGAGTGCACCGACCCCCAAGGGCTGTAGCCTTTGTTACTGTACCTGC
AACCCCGTGATACCTCACCCCACCTCACCTTCCCCCCATACCGCAACCCC
ATGCTCTGCACAATGATTTTGGAGCCAAGGTGCTACACTGGGGCCGCAAC
TTGTTGACAGTTGTGATGACCATGGTGTTATGGTACCCTATGTACTGTAC
TGCAGCCCTATGATACCTCACCTCAACTTTTCCCCATACCGTAACCCGAT
ACTCTGCACAAGGTTTTTGGAGCCCAGGCGCCACACTGGGGCCGCAACTG
GTTGACGGCAGTGATGACCATGGTGCCTGTCGTGTACCTGGCTGTGGTGC
TGCGCATCATGGCGAAGAGGGATTGGCCGGGCGGCGAGGCAGACGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig107:54607..55953+

>mRNA_S-ischiensis_contig107.1898.1 ID=mRNA_S-ischiensis_contig107.1898.1|Name=mRNA_S-ischiensis_contig107.1898.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=588bp|location=Sequence derived from alignment at S-ischiensis_contig107:54607..55953+ (Schizocladia ischiensis KU_0333)
ATGGCGGCGGCGAGGGGGGGGGGGGGGGGGGGGTCGCCCGCTGTTCCCGC
GTCAGCTGGAATTGGCGGTGCGGTGGCGGGCCGGAAAATGTACAGGACTC
GGCCGGTGTCCATTGTCGCCTGGTCAGACCTGGTAGAGCTGTTGGCACGC
CATGGTACGATGGCGGCGGCGAGGGGGGGGGGGGGGGGGGGGTCGCCCGC
TGTTCCCGCGTCAGCTGGAATTGGCGGTGCGGTGGCGGGCCGGAAAATGT
ACAGGACTCGGCCGGTGTCCATTGTCGCCTGGTCAGACCTGGTAGAGCTG
TTGGCACGCCATGGTACGGTTTTTGGAGCCCAGGCGCCACACTGGGGCCG
CAACTGGTTGACGGCAGTGATGACCATGGTGCCTGTCGTGTACCTGGCTG
TGGTGCTGCGCATCATGGCGAAGAGGGATTGGCCGGGCGGCGAGGCAGAC
GGGGTTTTTGGAGCCCAGGCGCCACACTGGGGCCGCAACTGGTTGACGGC
AGTGATGACCATGGTGCCTGTCGTGTACCTGGCTGTGGTGCTGCGCATCA
TGGCGAAGAGGGATTGGCCGGGCGGCGAGGCAGACGGG
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