mRNA_S-ischiensis_contig92.20951.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI) HSP 1 Score: 217 bits (552), Expect = 5.300e-62 Identity = 122/285 (42.81%), Postives = 181/285 (63.51%), Query Frame = 1
Query: 88 RSVLQGVVSFAAFTFGAPA-------AQQAARNHLGVDNFVTRSAA---AEASIVKKFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGS-QLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLD-EVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEESDDYKSFGFFPSSKSVDYVKAARDVKGH--RTRLTRMREF 900
RS+ +G S A FT GA A Q + G V+ AA AEAS+++ F KRT+ EKL+N+P FMV N +G+PYL+P+ G Q+ V FTN++DA EM+Q Y+++AR+LV+S++KA+ MVK GP+ TG N++G+ E M FKL D + +KA R+G+ + +D+PVFY EGL VK+ VK LF+D DL +AW KA ++P+MP +P +KVF++ +VI+ ME +D++ FGFF S++ +++K ARD + + RL RM F
Sbjct: 105 RSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF 389
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: A0A835Z8Y7_9STRA (Tic22-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y7_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.630e-54 Identity = 120/275 (43.64%), Postives = 155/275 (56.36%), Query Frame = 1
Query: 67 ERRRRLMRSVLQGVVSFAAFTFGAPAAQQAARNHLGVDNFVTRSA---AAEASIVKKFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLDEVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQME-ESDDYKSFGFFPSSKSVDYVKAARDVKGHRTR 879
+RR RL + + Q FA T GAPA Q R+ V +AEAS+ KKF++RTL EKL+NVP F +VN G YL G Q G+ FT+ EDAN EMLQ DAR+L+I LDKAF M+K PRATG N+ G E + F+ +E REK V Q +PVFYA GL + K VK +F D+++L AW KA K DPNMPR P I+V++L E++L ME + + FGF P+ SV+ +K R G R R
Sbjct: 13 QRRLRLKKRLAQVAAGFAVATAGAPALSQGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGGQQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQ--GAAVPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVRGQHGTRAR 284
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: A0A0G4ED78_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED78_VITBC) HSP 1 Score: 152 bits (385), Expect = 7.040e-39 Identity = 92/228 (40.35%), Postives = 136/228 (59.65%), Query Frame = 1
Query: 223 KKFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEG-PRATGGTNEKGMQEVMTFKLN--EDDGTREKAARMGVSRTQLDEVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQME-ESDDYKSFGFFPSSKSVDYVKAARDVKGHRTRLTRMR 894
KKFS R + E+LS+VPVF++ N PYLT G Q ++FT+ E+AN+ EM+Q DARL VISL+KA+ + PR TG E G + VMTFK + + + +G RT++ IPVF A GL V K+ D + LF+D+EDL AW + +A P+ P KPK+ V++L++V+L E +++ +G PSSK++D+VK R + R+ R+R
Sbjct: 66 KKFSSRPMDERLSSVPVFLITNSYALPYLTQVRPGEQTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTGIVGEDGKEAVMTFKFHPPQVENAGNYVTLLG-RRTKM----IPVFEATGLDVTKNGDKLCPLFMDLEDLEAAWERMHRARPDTPPKPKVSVYNLLDVLLHRERQANGLGPWGIVPSSKALDFVKKNRSGGTRKARMIRIR 288
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: M1URJ3_CYAM1 (Similar to chloroplast inner membrane protein Tic22 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1URJ3_CYAM1) HSP 1 Score: 142 bits (357), Expect = 3.550e-34 Identity = 82/229 (35.81%), Postives = 134/229 (58.52%), Query Frame = 1
Query: 226 KFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYE-DDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLDEVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEES------------DDYKSFGFFPSSKSVDYVK--AARDVKG 867
++S++TL EKL+ VPVF V N G P+L G Q+G+IF + +DA +++ + E +DAR+ ++ LD+AF+MVK P+ +G +G + M F+ + E A + Q +P F A+GL ++K ++ V +FLD DL +AWN+ R+ +P++P+I+V DL+EVIL++EE+ D + FFPSSKSV+++K +A+ KG
Sbjct: 126 RYSRKTLSEKLAQVPVFAVTNESGQPFLAAMERGLQVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYARTVAKKTKQPTVRGVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQPEIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMKRESAKQFKG 354
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD) HSP 1 Score: 136 bits (342), Expect = 5.170e-32 Identity = 78/220 (35.45%), Postives = 128/220 (58.18%), Query Frame = 1
Query: 226 KFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYE-DDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLDEVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEES------------DDYKSFGFFPSSKSVDYVK 846
++S++TL EKL+ VPVF V N G P+L G+Q+G+IF + DA +++ + E +DAR+ V+ LD+AF+MVK P+ +G +G + M F+ + E A + Q +P F A+GL ++K ++ V +FLD DL AW++ R+ ++P+ P+++V DL+EVIL++EE+ D + FFPSSKSV+++K
Sbjct: 134 RYSRKTLDEKLAQVPVFAVTNESGQPFLAAMERGTQVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQVEHARSLARKTKQPLVRGVPCFVAKGLTLRKGKEFVIPVFLDKRDLEDAWSRLRQDMSDLPKHPEVEVGDLIEVILRLEEAAKNPKSLDEKELQDIRRVAFFPSSKSVEFMK 353
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: R7QF31_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF31_CHOCR) HSP 1 Score: 128 bits (321), Expect = 3.220e-30 Identity = 84/220 (38.18%), Postives = 124/220 (56.36%), Query Frame = 1
Query: 202 AAEASIVKKFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSP-DGSQLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRT---QLDEVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEESDD--YKSFGFFPSSKSVDYV 843
AA A KFSK+T+ EKLS VPVF V N G PYL GSQ+G+IF + DA + ++M + DAR+ ++ LDKA++MVK P+ +G G + M F+ D +++ A G+ R + IPVF A+GL ++K +NV LFL EDL AW+K R ++ ++P + V +L+ +I QME + ++ GFF SV+YV
Sbjct: 13 AAPAFAAAKFSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDMKKNPG-ASDARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPD--SKQVKAAEGLQRKLRRRRGVEGIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYV 229
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: J7G7I2_9CRYP (Translocator of the inner chloroplast membrane n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G7I2_9CRYP) HSP 1 Score: 125 bits (314), Expect = 1.680e-28 Identity = 79/232 (34.05%), Postives = 123/232 (53.02%), Query Frame = 1
Query: 229 FSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLDEVD-IPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQM-------EESDDYKSFGFFPSSKSVDYVKAARDVKGHRTRLTRMREF 900
FS++ KL ++PVF V N GAP+L + G Q+G+IF + +A +EML+ + +++L+KAF+MV GP +G + GM M F+ + A R+ R +++ IPVF +GL + K ++ + +F EDL WNK RK DP++ +KP+I D +++ L M E Y +FGF PSSK+ D+VK ++ L RM EF
Sbjct: 97 FSEQPPLAKLKSIPVFSVTNRTGAPFLIQNKKGEQVGLIFFSYREAIDFSKEMLKAH-QAKKPYIYIMNLEKAFKMVNLGPTLSGLKDNYGMDHKMRFQFVPEKKQLNYATRLAKKRGITEKIPLIPVFTVDGLTLNKGKEKISPIFFAKEDLISVWNKVRKNDPSLHKKPQIIEGDFIQLFLFMKADYKNEENFQKYFNFGFVPSSKNKDFVK----IESINGPLARMVEF 323
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: F2HH75_9CRYP (Translocator of the inner chloroplast membrane n=1 Tax=Cryptomonas paramecium TaxID=2898 RepID=F2HH75_9CRYP) HSP 1 Score: 124 bits (312), Expect = 1.850e-28 Identity = 73/210 (34.76%), Postives = 117/210 (55.71%), Query Frame = 1
Query: 226 KFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGSQLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLDEV--DIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEESDD-YKSFGFFPSSKSVDYVK 846
+FS + +KLS +PVF + N G PYLT P+ Q+G+IF + EDA + M DAR+ ++ LD+A++MV T + Q+ T D + K A + V++ + DIPVF A+GL+VKK +D++ +F EDL K W K +P++ KP + V DL++++ ME + + FGFFPS K+++++K
Sbjct: 85 RFSSKNYYQKLSQIPVFAITNSSGQPYLTTGPEKEQIGLIFFSHEDALALLTAMKNTH-QVSDARIYIMGLDRAYRMV-----TADKTKNQLNQDFKTIFRFYPDQKQVKNASLIVNKLNFYKTIRDIPVFVADGLVVKKGKDSMTPVFFSKEDLEKTWKKMISENPDINVKPTVLVVDLLKILKAMENDEKIFSKFGFFPSQKNIEFIK 288
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: A0A6H5L2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U4_9PHAE) HSP 1 Score: 114 bits (284), Expect = 4.610e-26 Identity = 64/154 (41.56%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 448 FQMVKEGPRATGGTNEKGMQEVMTFKLNEDDGTREKAARMGVSRTQLD-EVDIPVFYAEGLIVKKSRDNVKALFLDMEDLAKAWNKARKADPNMPRKPKIKVFDLVEVILQMEESDDYKSFGFFPSSKSVDYVKAARDVKGH--RTRLTRMREF 900
F V R N+ G+ E+M FKL D + +KA R+G+ + DIPVFYAEGL VK+ VK LF+D DL +AW KA ++P+MP +P +KVF++ +VI+ ME +D++ FGFF S++ +++K ARD + + RL RM F
Sbjct: 9 FLTVSTPARTPRYQNDDGVDEMMDFKLEPDMHSFQKARRLGLDVSPAAANTDIPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKATASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARRPFPKPRLGRMWAF 162
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.070e-24 Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1
Query: 70 RRRRLMRSVLQGVVSFAAFTFGAPA-------AQQAARNHLGVDNFVTRSAA---AEASIVKKFSKRTLGEKLSNVPVFMVVNHEGAPYLTPSPDGS-QLGVIFTNLEDANSQCQEMLQLQFYEDDARLLVISLDKAFQMVKEGPRATG 483
R R RS+ +G S A FT GA A Q + G V+ AA AEAS+++ F KRT+ EKL+N+P FMV N +G+PYL+P+ G Q+ V FTN++DA EM+Q Y+++AR+LV+S++KA+ MVK GP+ TG
Sbjct: 99 RWARARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTKPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig92.20951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig92.20951.1 >prot_S-ischiensis_contig92.20951.1 ID=prot_S-ischiensis_contig92.20951.1|Name=mRNA_S-ischiensis_contig92.20951.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=289bp MPVNPNPSMEERRRRLMRSVLQGVVSFAAFTFGAPAAQQAARNHLGVDNFback to top mRNA from alignment at S-ischiensis_contig92:407337..416442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig92.20951.1 ID=mRNA_S-ischiensis_contig92.20951.1|Name=mRNA_S-ischiensis_contig92.20951.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=9106bp|location=Sequence derived from alignment at S-ischiensis_contig92:407337..416442+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig92:407337..416442+ >mRNA_S-ischiensis_contig92.20951.1 ID=mRNA_S-ischiensis_contig92.20951.1|Name=mRNA_S-ischiensis_contig92.20951.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1734bp|location=Sequence derived from alignment at S-ischiensis_contig92:407337..416442+ (Schizocladia ischiensis KU_0333)back to top |