mRNA_S-ischiensis_contig90.20881.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20881.1
Unique NamemRNA_S-ischiensis_contig90.20881.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: D7G461_ECTSI (JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G461_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.370e-62
Identity = 101/183 (55.19%), Postives = 130/183 (71.04%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAAWLERALNGTHPAMGERARHLDLVDGFAAVAHRKMPSKKKKHH 1325
            P  RW L+GPKRSG+SVH+DPLGTSAWNT++SGRK WVLF P V+K    GK VI + E+ +PINYFVD LPRI+R +    +K+YE +Q+PG+T++VPGGWWHAVLNL+DSVAITQNFCS  NF+  WR TR  R  M+    + L+  HP++ + AR L+  DGF  V       ++  HH
Sbjct:  199 PPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPPHVDKNVAKGKDVIRQGEDDEPINYFVDLLPRIRRKHGNS-IKIYEFVQYPGDTVFVPGGWWHAVLNLEDSVAITQNFCSRNNFEKVWRKTRTGRKKMSVKWLKELDKEHPSLADTARRLNSEDGFVMVDKGASSRRRSGHH 380          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A482T184_9ARCH (JmjC domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T184_9ARCH)

HSP 1 Score: 208 bits (529), Expect = 1.010e-58
Identity = 103/175 (58.86%), Postives = 122/175 (69.71%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGFAAVAHRK 1298
            P  RW LIGP+RSGS+VH+DPLGTSAWNTLISGRKRWVLF P V K  V GK VI + E+ + IN+F D LPRIK  Y +  L+V E IQ  GET++VPGGWWH VLNL  +VAITQNFCS  NFD+ WR+TR  R  MA  WL   L  THP +  RA  +++ +GF     RK
Sbjct:  186 PPYRWFLIGPERSGSTVHIDPLGTSAWNTLISGRKRWVLFRPGVAKHIVKGKEVIKKGEDDEAINFFTDLLPRIKTTYPD--LEVIEFIQEEGETVFVPGGWWHGVLNLTHTVAITQNFCSYLNFDSVWRETRWSRKKMAVRWLS-GLRETHPVLAARADRINMEEGFLMYDERK 357          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: K3X3W1_GLOUD (JmjC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3W1_GLOUD)

HSP 1 Score: 204 bits (519), Expect = 2.570e-57
Identity = 99/201 (49.25%), Postives = 128/201 (63.68%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGFAAVAHRKMPSKKKKHHVGKREAPGLALVGGELS 1376
            P  RW L+GPKRSG+ +H+DPLGTSAWNTL+ GRKRWVLF P V K  V GKH +   E+ + +NYF+D LPRIKR +  + L+  EL+Q+PG+TI+VPGGWWHAV N++D+VA+TQNFCSS+NF+  WR TR  R  MA  WL + L   HP +   A+ L+  D +      K           K+         GELS
Sbjct:  163 PPYRWFLVGPKRSGTCIHLDPLGTSAWNTLLVGRKRWVLFPPDVPKHVVKGKHHVRPSEDDEAVNYFMDILPRIKRAHPPEMLRCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNFCSSQNFERVWRKTRSGRKRMAVKWLTK-LEKKHPHLAALAKELNAQDNYVMYNKHKGDGDAAGSDTSKKHXXXXXXXEGELS 362          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A8K1CVA6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVA6_PYTOL)

HSP 1 Score: 203 bits (517), Expect = 2.360e-56
Identity = 93/167 (55.69%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAAWLERALNGTHPAMGERARHLDLVDGF 1277
            P  RW L+GPKRSG+ VH+DPLGTSAWNTL+ GRKRWVLF P V+KE V GK  I + E+ + +NYF+D LPRIK+ +  + L+  EL+Q+PG+TI+VPGGWWHAV N++D+VA+TQN+CSS+NF+  WR TR  R  MA    + L   HP +   A  L+  DGF
Sbjct:  206 PPYRWFLVGPKRSGTCVHLDPLGTSAWNTLLVGRKRWVLFPPHVSKEIVKGKSHIKKGEDDEAVNYFMDILPRIKKAHSPEELQCIELMQYPGDTIFVPGGWWHAVFNVEDTVAVTQNYCSSQNFERVWRKTRTGRKRMAVKWFQKLQKHHPQLATLAVKLNREDGF 372          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A6V1R424_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R424_HETAK)

HSP 1 Score: 203 bits (516), Expect = 3.630e-56
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAAWLERALNGTHPAMGERARHLDLVDGFA 1280
            P  RW L+GPKRSG+SVH+DPLGTSAWNT++SG KRWVLF P   K  V GKHV+   E+ +PINYFVD LPR+++   +  LK  E +Q+PGETIYVP  WWHAVLNL D++A+TQNFCS +NFD  WR +R  R  M+    R L   HP +  RA  L+  DG+A
Sbjct:   89 PPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGIKRWVLFPPGTAKHVVKGKHVMKSGEDDEPINYFVDFLPRMRK---DVNLKAMEFLQYPGETIYVPCNWWHAVLNLTDTIAVTQNFCSRQNFDGVWRKSRSGRKGMSRRWYRLLEEHHPDLAARAAALNRADGYA 253          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A5D6Y2Y9_9STRA (JmjC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2Y9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.260e-55
Identity = 97/169 (57.40%), Postives = 121/169 (71.60%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYR-EKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGF 1277
            P  RW L+GPKRSG+ VHVDPLGTSAWNTL+ GRKRWVLF P V K    GK  +   E+ + +NYF+D LPR+KR +  +   +  EL+Q+PG+TI+VPGGWWHAVLN++DSVA+TQNFCS++NF   WR TR+ R  MAA WL R L  THP +  RA  L+  D F
Sbjct:  233 PPYRWFLVGPKRSGTCVHVDPLGTSAWNTLLVGRKRWVLFPPDVPKAAAQGKRFVRPGEDDEAVNYFMDILPRLKRAHATDASFRCVELVQYPGDTIFVPGGWWHAVLNVEDSVAVTQNFCSAQNFARVWRKTRVGRKGMAAKWLRR-LALTHPHLVARAHALNAQDHF 400          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A3M6VB54_9STRA (JmjC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB54_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.960e-54
Identity = 94/168 (55.95%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGF 1277
            P  RW L+GPKRSG+++H+DPLGTSAWNTLI GRKRWVLF P V K  V GK  +   E+ + +NYF+D LPR+KR    + L+  E +Q+PGET+++PGGWWHAV N+DD+VAITQNFCSS+NF   WR TR  R  MAA WL+R L   HP +   A  L+  D +
Sbjct:  265 PPYRWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPPHVPKHLVNGKRYVRDDEDDEAVNYFMDLLPRLKRACPRETLQCVECMQYPGETVFIPGGWWHAVFNVDDTVAITQNFCSSQNFPAVWRKTRSGRKRMAAKWLKR-LETCHPELVTMAMELNQKDKY 431          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: M4BIS7_HYAAE (JmjC domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIS7_HYAAE)

HSP 1 Score: 197 bits (502), Expect = 3.910e-54
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGFAAVAHRK----MP-----SKKKKH 1322
            P  RW L+GPKRSG+++HVDPLGTSAWNTLI GRKRWVLF P + K  V GK+ +   E+ + +NYF+D LPR+K+    + L+  E +Q PGET+++PGGWWHAVLN+DD+VA+TQNFCSS+NF T WR TR  R  MA  WL+R L   +P +   A  L+  D F   +  +    MP      +KKKH
Sbjct:  224 PPYRWFLVGPKRSGTTLHVDPLGTSAWNTLIVGRKRWVLFPPHLPKRLVNGKNHVHGDEDDEAVNYFMDLLPRLKQASSPETLQCVEFMQFPGETVFIPGGWWHAVLNVDDTVAVTQNFCSSQNFPTVWRKTRSSRKRMAVKWLKR-LETHNPELAAMAMKLNQDDKFVMYSKGRRRCEMPPSSSYKRKKKH 414          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A662YDJ8_9STRA (JmjC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDJ8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.090e-54
Identity = 91/168 (54.17%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  777 PTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGF 1277
            P  RW L+GPKRSG+++H+DPLG+SAWNTL+ GRKRWVLF P V K  V GK  + + E+ + +NYF+D LPR+KR    + L   E +Q+PGET+++PGGWWHAVLN+DD+VA+TQNFCSS+NF T WR TR  R  MA  WL++ L   HP +   A  L+  D +
Sbjct:  218 PPYRWFLVGPKRSGTTLHLDPLGSSAWNTLLVGRKRWVLFPPHVPKGLVNGKKHVRKGEDDEAVNYFMDLLPRLKRASSAETLGCIEFMQYPGETVFIPGGWWHAVLNVDDTVAVTQNFCSSQNFATVWRKTRSGRKRMAVKWLKK-LEEQHPELAAMATELNQKDKY 384          
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: A0A7S1TSI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSI9_9STRA)

HSP 1 Score: 191 bits (485), Expect = 6.320e-54
Identity = 95/181 (52.49%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  738 PRNGHGKAWRETTPTCRWLLIGPKRSGSSVHVDPLGTSAWNTLISGRKRWVLFEPMVNKETVTGKHVISRLENRDPINYFVDQLPRIKRVYREKGLKVYELIQHPGETIYVPGGWWHAVLNLDDSVAITQNFCSSRNFDTCWRDTRLHRPAMAA-WLERALNGTHPAMGERARHLDLVDGF 1277
            P +  G    E  P  RW L+GPKRSGS VH+DPLGT+AWNT I GRKRWVLF P   K  V GK VI   E+ + INYFVD LPR++R Y  + +++ + IQ  GET++VP GWWHAVLNLDD++A+TQNFCSS N    WR  R+ R  MA  WL + L+ T P +    R ++  DGF
Sbjct:   19 PEDLFGLVGEERRPPYRWFLVGPKRSGSCVHIDPLGTAAWNTSIRGRKRWVLFPPGTPKHIVKGKSVIRDGEDDEAINYFVDLLPRMRRRYAGR-IRIIDFIQQEGETVFVPEGWWHAVLNLDDTMAVTQNFCSSVNLPVAWRKCRVERKKMARKWLYK-LDETRPDLARVVRDVNAEDGF 197          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G461_ECTSI1.370e-6255.19JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A482T184_9ARCH1.010e-5858.86JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
K3X3W1_GLOUD2.570e-5749.25JmjC domain-containing protein n=1 Tax=Globisporan... [more]
A0A8K1CVA6_PYTOL2.360e-5655.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6V1R424_HETAK3.630e-5656.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6Y2Y9_9STRA3.260e-5557.40JmjC domain-containing protein n=1 Tax=Pythium bra... [more]
A0A3M6VB54_9STRA1.960e-5455.95JmjC domain-containing protein n=2 Tax=Peronospora... [more]
M4BIS7_HYAAE3.910e-5451.56JmjC domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A662YDJ8_9STRA5.090e-5454.17JmjC domain-containing protein n=2 Tax=Nothophytop... [more]
A0A7S1TSI9_9STRA6.320e-5452.49Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:413842..422504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue7e-11
Seed eggNOG ortholog2880.D7G461
KEGG koko:K11323
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_005130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-14_004970.1
Exons8
Model size1535
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20881.1prot_S-ischiensis_contig90.20881.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 417844..422350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.7007914-UTR-S-ischiensis_contig90:413841..4141741622817407.7007914-UTR-S-ischiensis_contig90:413841..414174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 413842..414174 -
1695741092.0177994-UTR-S-ischiensis_contig90:413841..4141741695741092.0177994-UTR-S-ischiensis_contig90:413841..414174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 413842..414174 -
1622817407.7173223-UTR-S-ischiensis_contig90:415664..4158201622817407.7173223-UTR-S-ischiensis_contig90:415664..415820Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 415665..415820 -
1695741092.0353856-UTR-S-ischiensis_contig90:415664..4158201695741092.0353856-UTR-S-ischiensis_contig90:415664..415820Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 415665..415820 -
1622817407.7303615-UTR-S-ischiensis_contig90:417728..4178431622817407.7303615-UTR-S-ischiensis_contig90:417728..417843Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 417729..417843 -
1695741092.0482051-UTR-S-ischiensis_contig90:417728..4178431695741092.0482051-UTR-S-ischiensis_contig90:417728..417843Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 417729..417843 -
1622817407.8242452-UTR-S-ischiensis_contig90:422350..4225041622817407.8242452-UTR-S-ischiensis_contig90:422350..422504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 422351..422504 -
1695741092.1307995-UTR-S-ischiensis_contig90:422350..4225041695741092.1307995-UTR-S-ischiensis_contig90:422350..422504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 422351..422504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.7441385-CDS-S-ischiensis_contig90:417843..4178911622817407.7441385-CDS-S-ischiensis_contig90:417843..417891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 417844..417891 -
1695741092.063129-CDS-S-ischiensis_contig90:417843..4178911695741092.063129-CDS-S-ischiensis_contig90:417843..417891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 417844..417891 -
1622817407.7552986-CDS-S-ischiensis_contig90:418951..4190471622817407.7552986-CDS-S-ischiensis_contig90:418951..419047Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 418952..419047 -
1695741092.073271-CDS-S-ischiensis_contig90:418951..4190471695741092.073271-CDS-S-ischiensis_contig90:418951..419047Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 418952..419047 -
1622817407.7665677-CDS-S-ischiensis_contig90:420139..4203041622817407.7665677-CDS-S-ischiensis_contig90:420139..420304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 420140..420304 -
1695741092.083401-CDS-S-ischiensis_contig90:420139..4203041695741092.083401-CDS-S-ischiensis_contig90:420139..420304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 420140..420304 -
1622817407.7775059-CDS-S-ischiensis_contig90:421319..4214781622817407.7775059-CDS-S-ischiensis_contig90:421319..421478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 421320..421478 -
1695741092.0991778-CDS-S-ischiensis_contig90:421319..4214781695741092.0991778-CDS-S-ischiensis_contig90:421319..421478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 421320..421478 -
1622817407.7909288-CDS-S-ischiensis_contig90:421755..4218971622817407.7909288-CDS-S-ischiensis_contig90:421755..421897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 421756..421897 -
1695741092.1088843-CDS-S-ischiensis_contig90:421755..4218971695741092.1088843-CDS-S-ischiensis_contig90:421755..421897Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 421756..421897 -
1622817407.8108416-CDS-S-ischiensis_contig90:422183..4223501622817407.8108416-CDS-S-ischiensis_contig90:422183..422350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 422184..422350 -
1695741092.1203187-CDS-S-ischiensis_contig90:422183..4223501695741092.1203187-CDS-S-ischiensis_contig90:422183..422350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 422184..422350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20881.1

>prot_S-ischiensis_contig90.20881.1 ID=prot_S-ischiensis_contig90.20881.1|Name=mRNA_S-ischiensis_contig90.20881.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=259bp
MGTPNSRFAMAQGSSSALSGAILMVCAAVSLGSTIAPPYAEDACLHKCLD
ERRADTCLPGDAAKCMEGNPAAASKLLWNFMFDGQEFIAVNATAQEYPPW
DVTFQDTWRDIFADIKLRARPGESLRKWQMDGFGVEGRRLGDFEALRVDS
IDCPDKVDRIYRSEVSPEEFWERYEETEVPVVVADIPQWGGWPAAEEWTW
EGLERDYPDLQVASHRPQALRFVGARRPPGDQCVEHPHQRPQAVGSVRAH
GKQGDSYW*
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mRNA from alignment at S-ischiensis_contig90:413842..422504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20881.1 ID=mRNA_S-ischiensis_contig90.20881.1|Name=mRNA_S-ischiensis_contig90.20881.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8663bp|location=Sequence derived from alignment at S-ischiensis_contig90:413842..422504- (Schizocladia ischiensis KU_0333)
CAATTGAAGTCCCTACAATATACTCCCTCGGTTTTGGTACTTAATTGACC CGTTCGATGACCATGACACCTGCAGGGTGCATGCACCGCCCGTTGGGGAG TACCGTCTCATCAAGGTTCAAGGCCCTGCAGGAGCGCTGGCCCTGTAAGC TGCAATGGGGACGCCCAATTCCCGGTTCGCCATGGCACAGGGCTCATCAT CAGCCTTGTCTGGAGCGATACTCATGGTCTGCGCCGCCGTGAGCCTCGGA AGCACCATCGCCCCTCCCTACGCCGAGGACGCATGCCTGCACAAGTGCCT TGACGAACGCAGGGCTGACACGTGAGTGTTCCTAAGCGGGTGGTGGCATG GGCATGGACTTGTGGCAGTCCAAGGATCGAGCAGTGGCGCAACATGCCCT GGGCTGAGTCTGCCGGAGTGCAGATGGGTCGCCGGCAGCAGGCTGTCTCG TACTGTATCGTCGGCTGCCTGTGCCCCATGACTGAAACTTCGCCCGTCAC CGCCAAACCGGCAGCCCCGAGGGCGCCCAGCGAACCACTCAACGCATATT GCCACCGACGACGCTAGTTGATACCCTCCCCGGGGGTGTTGCGCCGTGCA CGGGCAGGTGCTTGCCTGGGGATGCCGCCAAGTGCATGGAGGGGAATCCG GCCGCAGCTTCAAAGCTCCTGTGGAATTTCATGTTTGATGGGCAGGAGTT CATTGCAGTCAACGCCACCGCGCAAGAGTACCCGCCGTGGGACGTGACGG TGGGTGAATTGGAACACGCCTGATAATATTGCAGCCATCAGGGACAAAGA GTCCTTTTTGCAGTCGCGCATGTCCGCCCGCACAGCCCCAAGAAACGCCC CTTGCTCACCAAGCATTGCGCCTGTATACCGGTGGCAAACCGTCGCTGCC AGTTCCAAATATGAGGACGCTCAATTCTCCAATGGAACAACTACTACAGT AGTACTAGTACGAGAACAGTCAATCTCACACACGTGCGATTGTACCTCGT TTCATTTTTTTGTGAATCACCGCCAGTTCCAGGACACCTGGCGGGACATC TTCGCGGACATCAAGCTCCGGGCGCGGCCCGGCGAGTCGCTGAGGAAGTG GCAGATGGATGGCTTCGGCGTGGAGGGCAGGCGCCTGGGGGACTTTGAGG CGCTGCGCGTGGATAGCATCGACTGCCCCGACAAGGTCAGTCAGTGTTAT CCCTATTGCCCCTGGTGAATTGGACTTACACACTAAAACCCTATGACTAT ACGGACCCCAGGGGGAAAAGGGTTGAGGCGCTGCGCACGGACGGATCGAC GGCCCCAACAAGGTGGGTGTTAACTCTTTTACCCCTGAGGTCCGTATAGT CATACCTAGGGTTTTAAGTCGTGTGTAGGTCCAATTTAGCAGGGGTAAAA GGGTTAAGAAACCCGTCCGCGCGTTACCGCTGACCTTCACGCTAAAACAC ACCGATGGTAGTCATGCTCCGGACCCTACGTTAAGCGCCTGGGGGACCTC GAGGCGCTGCACATGGACGGCATCGACTGCCCCGACAAGGTCAGTGAAAA GAGAGAAAGCCATGTGTATCGCGCGTCCTTGAAGCACTGCCCGGGGGCGG GAGCTCGCCTCCACCCTCGGGTACCCGAACCCAAGGCCGGACATGGGTAA GCCCCATCCGCGACCAGCGATCCCACAATCCCCCCGACCTGCCGGTCGGG GTAGTCTCACCGGCAGCGTTAGGTACCTACTGTAGCGCCCAACATGCAAA GTGCTTGGAAGTACTTACACTAGAGCTACATTCACCTGGGTACGAGTACA CGTACTTACAAGTCACACAAGTGCCACTGGGCTTCCAGGTGCCTGCGAGC AAAAAACACTTGAAAATATCGTACTTGCCTGCCCCCCCCGGGCATGGTTG GTACTTTGAGGTTCGTTAGGGCCTAGTTAGCCTTCATTTTAAGTCTAACT GCCCCTAATTACCTCTAATTAAGCGCCTATAAGGGCACCACATAGGGGTT AAGAGCCAACCCTGCCCCGGGGGGGACCCCGACCAAAAACGCCTGCACAG GTCGACCGCATCTCCCGCAGCGAGGTGCCCCCGGAGGAGTTCTGGGAGCG GTACAAAAAACACTTTCAAATATTCCACTTCGAAGTACTTCGAAGTACTT GCCTATGTGCCCCCCCCCCGGGGCGACCCCGACCAAAAATGCCTGCACAG GTCGACCGCATCTACCGCAGCGAGGTGAGCCCAGAGGAGTTCTGGGAGCG GTACGAGGAGACCGAGGTGCCCGTGGTCGTGGCGGACATCCCGCAGTGGG GCGGCTGGCCCGCCGCCGAGGAATGGACATGGGAAGGCTTGGAGAGAGAC TACCCCGACCTGCAGGTGAATGTTGATTTCGGTTGTGATTCATATAAATC GTTTGTTGCTTCTTTGCCTGATTTTTGTTCCCTGCGGGCCAAGAAGGGCT TCTGCTGAGGTCCGCACCTTAGGTTGTTGGGACGGGGCCCGGAACTCGCA TGTCCTTGGTACTTCCGTGAGTAATAAAACAAAAAAATTGTACGAGGTAC AATCACGTGTGTAAGATTGAGTCTTCTCATGTTAATGGTTGTCCCATTCA AGGATTGATTTCTTATATTGGTGATTATCAAATCAAAGATGTAAAAACAG TTGATTGGGTTTCCACGGTGGTCGGAGGCGTTCTATGTGAGTGCGTACAG TGTGTGTGCACCGTATAATGACGCAAGATACCCTAACCGGTGTGTTCGCT CTAGCTACTTCCTCAAGTCCTGTACGTAAGTAATACTGCACCTCAACGTG CTCGTCCAAGACCGCTGAAGTGTGTTGGCGGTGGAGGAGCAGGAGGAGGA GGAGGAGGACGAGTGTGTAAGGAAGCTGTCGAAGAGTCAAATGGCACTCC TCCTCCTCCACCTCCTCCACCACCATCACCTCCTCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCC CCTCCGCCTTCACCTCCTCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCC TCCCCCCTCCCCCTCCCCCTCCCCCCTCCTCCCCCCTCCCCCTCCCCCCT CCTCCCCCCCCCTCTCCTCCCCCTCCCCCTCCTCCCCCTCCCCCTCCTCC CCCTCCCCCTCCTCCTCCTCCCCCGCCTCCTCCTGCCCCCGCCTCCCCCC CCGCCTCCTCCCCCTCCGCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCC TCCTCCCCCTCCTCCCCATCCCCCTCCTCCCCCTCCTCCTCCTCCCCCTC CTCCTCCTCCCCCTCCTCCCCTCCCCCTCCTCCCCCCCTCCCCCCCTCCT CCTCCCCTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCCTCCTCCACCACCACCACCACCACATCACACGATTGG CGCACAGGTGGCTTCTCATAGGCCCCAAGCGCTCCGGTTCGTCGGTGCAC GTCGACCCCCTGGGGACCAGTGCGTGGAACACCCTCATCAGCGGCCGCAA GCGGTGAGTGATTCATTAGCGGCCGCAAGCGGTGAGTGATTCATGTAAAT TGTAGCGAGGTACAATCGCAGTGGTGAGTCCGGCAGCGTGCATGCATATG CACCTCTGCCGTCGTCCTGGGAGAAACTCGGTAGTTACGAAACAAAATTC GGTAAGTTAGTTGCGAAACAAAACTCAGTAACTATTTAAGAAACAAAACT CAGTATTTAAGAAACAAAAATACGTAGTGAAGAACACACGTGCACCTCTG CCCTCATCCCGGGAGGGCTTGGGCGGTTGACAATGCGATAACTTAACCCT TTTACCCCTGGTAAATCGGACTTACACACTCAAACCCTATGGATATACAG ACCCCAGGGGTAAAAGGGTTGAGAGGATGGCGCGGGGCATTGGTGTGATG TGGTGTGATGTGATGTGCTCTAATGAGGTACTGTACTTTGTTCGACAGCG CATCACATCAGACTACTACAGTAGTAGTGTCCCCGCCGTCCAAAAGGCAT ATGGTTTTGCGCGCTCCTGTGCTCTACAGGCGGTCTGCTGCTTTCTACAA TATGTACTTGGAGGTATGTACTTCGGAGTACTTGGGAGTACCTACTCGCT AAGCCAAACTGCTGCGTAGAAAGTTGCTGCACAGTTGCCCACAACCGTAG AGCTGTCTATAATGGAAGTAGTGTACTGTACTGCAGTGCTTTCCTGCAGC ATGACAAATCTACACTAGATACAGCCTGGATATAGCCTCGTACTACAACA ACTACTGCAATCAACATTCAAATTTCCCCTGGCGAGCTATAAGGAACGGC CACTGCTGAGGTCCTCAGTGACATGGCCCGCACCTCGCCCTGTGTTGTTC CTGTTACTACTGTAACCGACATCATTTGCACTGTGCTGTCCACCGCAGGT GGGTTCTGTTTGAGCCCATGGTAGACAAGGAGACGGTTACTGGTAAGCAC GTGATCAGGCTGGAGAATAGGGACCCCATTAACTATTTTACTAACTAATC GGGACATTGCCTCGTACTTCGAAGTATTAATTTGTCGATATCATTCTGTG CTGTCCGCCGCAGGTGGGTTCTGTTCGAGCCCATGGTAAACAAGGAGACA GTTACTGGTAAGCACGTCATCAGCAGGCTGGAGAACAGGGACCCGATCAA CTACTTCGTCGACCAGCTGCCTCGGATCAAGCGCGTCTACCGGGAGAAAG GGCTCAAGGTCTACGAACTCATACAGGTGCTTGCAAGGATTTTGCCTAAA AATTGCCAATAAGTGCCCTTTCAAGAATGCCCAAGGGAGAAGGGGCTCAA GGTCTACGAACTCATCCAGGTGCTTACAACGATTTTGCCTAACAATGGCC AAAAAGTGCCCTTGCAAGAAAGCCCAAATAAAAGAAACATCTGCACAAGA AAACACCCTTGCCTCTTTTCAAGAATTTAAGAAAAAGGCCTTCTCGTTTT CCTGGAGTTTCTTAGCAGGTGTCGTATACTGTACCTACTCGAGTAGAGTA CTCTTAGCAGGTGTCTTATACTGTACTTGCTCGAGCAGAGCACTCATACT CCCTTGGAAGTGCCTCCGGAGTGGGTACTGCGATACGAGCATTGTATGCG TGTCAGAACATGTATCCATGATGTTGCAACGACACACATGGCCTCTTGTC CCCTGTGCAAGACTCTTTGCAGCCCCTTGTAGCCCTCTCAGTCTACTGTA GGAGATTCCTCTAGTTCATGAGACGAGGTACTTCAACGATACGCTCACGC GCATTCACGTTCACAGGCCGCCCTCCCTCCCCCCCTCGCCCAGTTCCCCT CCTCGTGGCCACAACGAGCTTGTCGAAACGTCAACCCCCCCAAACTCTTC ACGTCCCACTCGTTCCGGGTTGCCCCCCCCCCCCCTGCCGGGCTCCGCTG TGCTCGTACACACACACACACACACACACACAACACACACACAGCACCCG GGGGAAACAATCTTCTGTGCGTGCCGGGGTAGTACGAGAACACTCAATCT CACTCACTTGCTATTGTACCTCGTTGCAATGTACATGAATCATACACACA CACAGCACCCGGGGGAAACAATGTACGTGCGAGGACACTCAATCTCACAC ACGTGCGATTGTACCCCGTACAATTACACAGCACCCGCGGGAAACATCTA CGTGCCGGGGGGCTGGTGCAACCCTCCGAAACTGTTCACGGCCCACTCGT CCCCCTGCCCGGCTCGGCTGTGCGCGTACACACACACACACACACACACA GCGCCCAGGGGAAACAATCTACGTGCCGGGGTAATACGAGAACACTCACT CTCACACACGTGCGACTGTGATTGTACCTCGCTACATGTATATGAATCAC ACACAGCACCCGTGGGAAACAATCTACGTGCCGGGGGGCTGGTGACACGC TAACCACTACTGGTACGAGAACACTCAACCGTACACACGTGCGATTGCAC CTCATTACACTTTATACATCATATGAATCACGCACACAGTACCCGCGGGA AAACATCTACGTGTCAATCTCACAGACGTGCGATTGTACCTCGTTACCTC TTTACAATGTATATGAATCACACGCACACAGTACCTGGGGGAGACAATCT ACATCCTTGAATGGGATAACCACTGCACTGTAGTATGAGAACACTCAGTC TCACACACGTGCGATTGTACCTCGTTACAATGTAGTCGTATGTGAATCAC ACGCACAGCACCCGGGGAAACAATCTACGTGCCGGGCGAGAACACCCAAT CTCACACACGTGCGATTGTCACCTTTCATGAATTACACGCACAGCACCCG GGGGAGACAATCTACTGTACGTGCCGGGGGCACGCGGTGCTGAACCTGGA TGACCCCTGAATGGGATAACCACTACTTACATGTAATACGAGAACACTCA ATCTCACACACGTGCGATTTTACCTCTTACTTCGTACAATGAATATGAAT CGCACACACAGCATCCAGGGGAAACGATCTACATGCCGGGGGGCTGGTGG CACGCGGTGCTCAACCTGGAGGACACCGTGGCCAATACGAGAACACTCGA TTGTCAAATGGGATTCACCACAAATACGAGAACACCCAATCTCACACATA TGCGATTGATACCTTACATGAATCACACACACAGCACCCGGGGGAGACAA TCTACGTGCCGGGGGGCTGGTGGCACGCGGTGCTGAACCTGGACGACAGC GTGGCCATTACACAGAACTTCTGCAGCAGCCGCAACTTCGACACATGCTG GCGCGACACACGCTTGCACAGGCCCGCCATGGCTGCGTGGGTGAGGGTTT GCCGTTTACGTACAGTACGCTGCAGAGTTGTGTTTCTAAAGGCTCGTACT CGAGCACTGCTGTCACCAACACATCGTTCTGCAGTATTGTTGTACTTGGA AGTACTCCACAACTTCGACACATGCTGGCACGACACCCGTCTGCACGGGC CCGCCATGGCCGCTTGGGTGAGGGGGCTTGTCGCCTTAAACGCCTTGTGT TGTTTGCGTACAGTGCGCTGCAGAGTTGTGTTTCTTGAGGCAGGCTCGTA CTGTTTTCACCGACACTTGGTACTGCAGTATTGGTGTACTCTGGGTGTAC TATAGTAGTCTGTATGCTTTTGAGTACAGGCAGGACATCACTACTGCGTC CCTGGCGAGCTATAAGGAAGGGCCACTGCTGAGATCTTTAGTGGCGTGGC CTGCACCTCGCCCCGTGTTGTTCCTGTTGATACTGCCGCTTCACTGCACG ATTGCTTTGTTGCACTGCACTTGGAAGCGTATTTATGCCTAGGTAGCTGC TAGGTACTTCCCGGGTTGCTGGTGTTCTACCGTTCGCGAGGCCGCCGTCT CGGTCGCCGAGGCACGTGGTCGATGACGGTCTCCGGACTGCGGTAGGCAC AGCGTGAGTAAGTACCCTCATAAGTACTTCCAACTACAGTCTCCTAGCTA CTTGGACAGCCTTAATTCAAAACTACTTGGGAACTTTGAAACCAAGTGTC CAAACTACTTGGGTTCTCTCGAAACTGACTCTCCCAACTACTTGGATTCT CTGAAACCAAATCTCCTAGCTACTGCGGTCCTTTGAGACCCATTATCCGA ACTACTTGGTGGTTTGTAGCAATGGTCTCGGGAGTACGGCAAGCACAGCG TGACTACTTGCTCGAGTACATGCATACTCGAGGCACACACATACTGTCCG TCCCTCCCTCATGAAAGGCCTGCTCGTACAGGTATATACGTACTTGAGTA CGAGTATACTTGTGCTGTGCCTGCCGTAGTACTGAGACCGTTGACCCCTA TAGCGCCTCATGGGTTACTTATTATTAATAGTTACGAAGTACCTGCTCCG TCTCGACCGAGGCGTGCGATCAATGGTCTCGGGACTACGGCAAGCACAAC GTGAGTGAGTACATATATAACCCCAGTCCCCTACTTGGAAGGGCTGGCCT GAACCCCTTAAGCTCTGAGGAAGGCGGTATATTCATACAGAAATTCACGT CCAAGATTCGCCTTCCTAGCAAAGAAAATAAAACAATGTTACTCGTAGAG TACCGCCATCCTCTAAAGGGTGGACCCCTCCTTCTCCGCTCCCCCTTCCG CGCTCGCTGCGTGCCTCCCGGCTGCAGCTCGAGCACGCCCTGAACGGCAC GCACCCGGCCATGGCAGAGAGGGCCCGCCACCTGGATAAAAGAAAAAAAA ACAATGACTCTATCGTAGTAGAGTATCATCCTCTAAAGGGTGAACCCCTC CCCCTCCCGCGCTGCGCTACCTCCCGGCAGCTCGAGCGCGCCCTGAATGG CACGCACCCGGCCATGGGGGAGAGGGCACGCCACCTGGACTTGGTGGATG GCTTCGCCGCGGTGGCGCACCGCAAGATGCCCTCCAAGAAGAAGAAGCAC CATGTCGGGAAGAGGGAGGCGCCCGGGTTGGCCCTGGTTGGGGGGGAGCT TAGCTAGATATTAGAGGACTGCGATGCAACGGAAGTACTGGTCCTCCTCC TCCTCCTCCTCCGCCTCCTCCACCATATCGGGAAGAGGGAGGCGCCCAGG TTGGCCCCAGTGGGGGGGGAGCATAGCTAGATATTAGAGGACTGCGATGT ACGGAAGTGCTGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:413842..422504-

>mRNA_S-ischiensis_contig90.20881.1 ID=mRNA_S-ischiensis_contig90.20881.1|Name=mRNA_S-ischiensis_contig90.20881.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1554bp|location=Sequence derived from alignment at S-ischiensis_contig90:413842..422504- (Schizocladia ischiensis KU_0333)
ATGGGGACGCCCAATTCCCGGTTCGCCATGGCACAGGGCTCATCATCAGC
CTTGTCTGGAGCGATACTCATGGTCTGCGCCGCCGTGAGCCTCGGAAGCA
CCATCGCCCCTCCCTACGCCGAGGACGCATGCCTGCACAAGTGCCTTGAC
GAACGCAGGGCTGACACATGGGGACGCCCAATTCCCGGTTCGCCATGGCA
CAGGGCTCATCATCAGCCTTGTCTGGAGCGATACTCATGGTCTGCGCCGC
CGTGAGCCTCGGAAGCACCATCGCCCCTCCCTACGCCGAGGACGCATGCC
TGCACAAGTGCCTTGACGAACGCAGGGCTGACACGTGCTTGCCTGGGGAT
GCCGCCAAGTGCATGGAGGGGAATCCGGCCGCAGCTTCAAAGCTCCTGTG
GAATTTCATGTTTGATGGGCAGGAGTTCATTGCAGTCAACGCCACCGCGC
AAGAGTACCCGCCGTGGGACGTGACGGTGCTTGCCTGGGGATGCCGCCAA
GTGCATGGAGGGGAATCCGGCCGCAGCTTCAAAGCTCCTGTGGAATTTCA
TGTTTGATGGGCAGGAGTTCATTGCAGTCAACGCCACCGCGCAAGAGTAC
CCGCCGTGGGACGTGACGTTCCAGGACACCTGGCGGGACATCTTCGCGGA
CATCAAGCTCCGGGCGCGGCCCGGCGAGTCGCTGAGGAAGTGGCAGATGG
ATGGCTTCGGCGTGGAGGGCAGGCGCCTGGGGGACTTTGAGGCGCTGCGC
GTGGATAGCATCGACTGCCCCGACAAGTTCCAGGACACCTGGCGGGACAT
CTTCGCGGACATCAAGCTCCGGGCGCGGCCCGGCGAGTCGCTGAGGAAGT
GGCAGATGGATGGCTTCGGCGTGGAGGGCAGGCGCCTGGGGGACTTTGAG
GCGCTGCGCGTGGATAGCATCGACTGCCCCGACAAGGTCGACCGCATCTA
CCGCAGCGAGGTGAGCCCAGAGGAGTTCTGGGAGCGGTACGAGGAGACCG
AGGTGCCCGTGGTCGTGGCGGACATCCCGCAGTGGGGCGGCTGGCCCGCC
GCCGAGGAATGGACATGGGAAGGCTTGGAGAGAGACTACCCCGACCTGCA
GGTCGACCGCATCTACCGCAGCGAGGTGAGCCCAGAGGAGTTCTGGGAGC
GGTACGAGGAGACCGAGGTGCCCGTGGTCGTGGCGGACATCCCGCAGTGG
GGCGGCTGGCCCGCCGCCGAGGAATGGACATGGGAAGGCTTGGAGAGAGA
CTACCCCGACCTGCAGGTGGCTTCTCATAGGCCCCAAGCGCTCCGGTTCG
TCGGTGCACGTCGACCCCCTGGGGACCAGTGCGTGGAACACCCTCATCAG
CGGCCGCAAGCGGTGGCTTCTCATAGGCCCCAAGCGCTCCGGTTCGTCGG
TGCACGTCGACCCCCTGGGGACCAGTGCGTGGAACACCCTCATCAGCGGC
CGCAAGCGGTGGGTTCTGTTCGAGCCCATGGTAAACAAGGAGACAGTTAC
TGGTAAGTGGGTTCTGTTCGAGCCCATGGTAAACAAGGAGACAGTTACTG
GTAA
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