prot_S-ischiensis_contig90.20881.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig90.20881.1
Unique Nameprot_S-ischiensis_contig90.20881.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length259
Homology
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BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Match: D7FPH7_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH7_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.310e-10
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:  127 KWQMDGFGVEGRRLGDFEALRVDSIDCPD-KVDRIYRSEVSPEEFWERYEETEVPVVVADIPQWGGWPAAEEWTWEGLERDYPDLQV 212
            KW  +GF    RR  DFE LRVD I+ P  ++ R + S V+ EEF ++YE    P+++  +P+  GW AA  WT   L R YP++ V
Sbjct:    5 KWN-EGFAFAERRAADFETLRVDKIERPPFEITRFHVSNVTAEEFRDKYESIHEPLIIDGVPEAEGWGAAN-WTIPTLARKYPNMTV 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPH7_ECTSI5.310e-1041.38JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.650coord: 136..233
e-value: 4.2E-10
score: 41.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..32
score: 0.578

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:417844..422350 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20881.1mRNA_S-ischiensis_contig90.20881.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig90 413842..422504 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig90.20881.1 ID=prot_S-ischiensis_contig90.20881.1|Name=mRNA_S-ischiensis_contig90.20881.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=259bp
MGTPNSRFAMAQGSSSALSGAILMVCAAVSLGSTIAPPYAEDACLHKCLD
ERRADTCLPGDAAKCMEGNPAAASKLLWNFMFDGQEFIAVNATAQEYPPW
DVTFQDTWRDIFADIKLRARPGESLRKWQMDGFGVEGRRLGDFEALRVDS
IDCPDKVDRIYRSEVSPEEFWERYEETEVPVVVADIPQWGGWPAAEEWTW
EGLERDYPDLQVASHRPQALRFVGARRPPGDQCVEHPHQRPQAVGSVRAH
GKQGDSYW*
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