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Homology
BLAST of mRNA_S-ischiensis_contig90.20880.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 2.930e-11 Identity = 48/118 (40.68%), Postives = 58/118 (49.15%), Query Frame = 1
Query: 34 LERRTAPRADPLCSKTLAFMPLCQVAFTRTGLVTLCGEGFLKLWTRPAMQSPLPPLMPPAAAVADRAGDPRHAAAELGGEFVSRGK--DDGAAAASLPGHGQDEEAAVEAIGRLSVSV 381
L R++ PR +PLC K LA +PL QV R G+VTLC EG LKLW RP M PLPPL ++ G RGK D G+ S GQ EEA + S S+
Sbjct: 857 LSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPL-------------------QMDGADFGRGKGDDSGSGGTSAAMDGQQEEAGTASPSLESSSL 955
BLAST of mRNA_S-ischiensis_contig90.20880.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.740e-10 Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 34 LERRTAPRADPLCSKTLAFMPLCQVAFTRTGLVTLCGEGFLKLWTRPAMQSPLPPLMPPAAAVADRAGD 240
L R+ PR +PLC K LA +PL QV R G+VTLC +G LKLW RP M PLPPL A + GD
Sbjct: 995 LSRQLTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCADGLLKLWARPTMPPPLPPLQVDGADFGRKKGD 1063
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 77.8 |
| Seed ortholog evalue | 1.5e-11 |
| Seed eggNOG ortholog | 2880.D7G1Z3 |
| Preferred name | creC |
| KEGG ko | ko:K03115 |
| KEGG Pathway | ko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0030428,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032153,GO:0032991,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045013,GO:0045892,GO:0045934,GO:0045990,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051286,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0070646,GO:0070647,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 |
| EggNOG free text desc. | carbon catabolite repression |
| EggNOG OGs | COG2319@1,KOG2394@2759 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03009 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 3 |
| Model size | 1444 |
| Cds size | 1443 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817407.6440003-CDS-S-ischiensis_contig90:398111..398216 | 1622817407.6440003-CDS-S-ischiensis_contig90:398111..398216 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 398112..398216 + |
| 1695741091.9800985-CDS-S-ischiensis_contig90:398111..398216 | 1695741091.9800985-CDS-S-ischiensis_contig90:398111..398216 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 398112..398216 + |
| 1622817407.655659-CDS-S-ischiensis_contig90:398725..398953 | 1622817407.655659-CDS-S-ischiensis_contig90:398725..398953 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 398726..398953 + |
| 1695741091.992678-CDS-S-ischiensis_contig90:398725..398953 | 1695741091.992678-CDS-S-ischiensis_contig90:398725..398953 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 398726..398953 + |
| 1622817407.6708822-CDS-S-ischiensis_contig90:399853..400963 | 1622817407.6708822-CDS-S-ischiensis_contig90:399853..400963 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 399854..400963 + |
| 1695741092.0027192-CDS-S-ischiensis_contig90:399853..400963 | 1695741092.0027192-CDS-S-ischiensis_contig90:399853..400963 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig90 399854..400963 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig90.20880.1 >prot_S-ischiensis_contig90.20880.1 ID=prot_S-ischiensis_contig90.20880.1|Name=mRNA_S-ischiensis_contig90.20880.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=481bp
VSTPLARRVVRLERRTAPRADPLCSKTLAFMPLCQVAFTRTGLVTLCGEG
FLKLWTRPAMQSPLPPLMPPAAAVADRAGDPRHAAAELGGEFVSRGKDDG
AAAASLPGHGQDEEAAVEAIGRLSVSVPEDLGDDHPPGDMAAAAAAAAAA
AAPAATNLVGGNGGGAAAPPPPPTPPSPPHLNGSSSGDGSGSGGGGSGGG
GSGSGGRRSWVPGTGGAKGAAAASAATAAIADRESLIRMDLITPKGGGPS
GCGAGGEDPAAAGGRGGGRKKSFSSFLSLRRPFFVGAEKSGGGGGGGGSS
MSTSTSAGTGMSGLPIVSHGNGPSARAGAGAGAAAAAAPQASSTSSGWPG
GASGSGSWSSSSVPSESSSRGPGARRRGPGAAPAPEAAASAAAQAGPTPP
QVVTAAPAQAVEPLAPVVRSGSDASAIAAAVAAVPAGARHGKLPGPASGH
RGGPDAADSTQATARAAGAAATVRAGGPATP back to topmRNA from alignment at S-ischiensis_contig90:398112..400964+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig90.20880.1 ID=mRNA_S-ischiensis_contig90.20880.1|Name=mRNA_S-ischiensis_contig90.20880.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2853bp|location=Sequence derived from alignment at S-ischiensis_contig90:398112..400964+ (Schizocladia ischiensis KU_0333)
GTTTCTACGCCCTTGGCGAGGCGGGTGGTGAGGCTGGAGAGGCGCACGGC
GCCCCGGGCGGACCCGCTGTGCAGCAAGACGCTGGCGTTTATGCCGCTCT
GTCAGGTGTGGGGCCTATCTGTGTGTCTTTATTTCGATGGCCAGTGCAAC
CCTGCTCACCCCGGAGCGCTTCAACAAACTGCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCCCCCCTCCTCAGTAACTCTTATTCTTT
TGTTCAACAAACAGGTGGCCTTCACTCGGACGGGCCTGGTGACCCTGTGC
GGGGAGGGCTTTCTCAAGCTCTGGACCCGGCCGGCAATGCAGTCACCGCT
GCCCCCGCTCATGCCGCCGGCGGCGGCAGTGGCGGACCGCGCCGGCGACC
CGCGGCACGCAGCGGCGGAGCTGGGCGGGGAATTCGTTTCCCGGGGCAAG
GACGATGGGGCTGCTGCTGCTTCCTTGCCGGGGCATGGGCAGGTGAGCCC
GAGTGTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTTGCTATTTGTGCAT
GCCTTTCGTGAGAACTGCCCCGTCTCGGCCGAGGTGCGTGGGCAACGTAC
TACAGTAGCACTACTGTAGTGCTGCTAGTACAGTACTACTATTGCTGCTG
TTGTTGCTGCTGCTGCTGCTAGTGCTTATACTGCTGCTGCTGCTGCTGCT
ACTACTTCCAAGTACTCTACCTAGAGTGCTCGAGTACTCGTACTACGACT
ACTACTAAACTGCGGCTACTGCACTGCTGCTACTATCACTTTGAGGACTA
CATACTTGGCAGAGGCGCAGTATGCTGCAGGTATGTACGAATGCGGCACC
TCTCGCTTATGCAGAACACAGTACTTGGGAGCATTGTATGTACTACTCAT
GCAGTACTGTGGCAGTGCTTTCATAGTACGGACGGCAGTCCATACGTCAA
CCCTAAGCGTATGCCTCGACATCCACCGCCACTTTCCCCCCCCGGCGACC
CAAGCCTCCTCCACCCCCGCTGCCACACCGCCCCCTTCCGCCTCCGCAGC
GGCCACAAACCCGTGCCCCGTCACTCTCCCCAACTCCAGGGTTGGTACTT
ACCCCCTAAGTGGTGCCCTTTTAGGCACTTCACTAGATGTAATTAGGTTT
GAATTATATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATT
GACCCCGCGCCTCGTTCAAGACGGAGCGGGTCCCCTCCCTCCCCTGGCAG
AGCCAGGGTGGGAGATGGTGGCCACCCCCCCGCCAGGGGCTAATTAGGCG
TATAATGAAGGTAGGGGTAACTAGGCTTAAAATGAAGGCTAATTAGTCTC
TAAATAACCTCTAAGTGCCAACCCTGCCCAACTCTGCACCAGGACGAAGA
GGCCGCTGTGGAGGCCATCGGCCGCCTCTCCGTGTCTGTGCCAGAAGACT
TGGGAGACGACCATCCCCCTGGGGACATGGCCGCGGCGGCGGCGGCGGCG
GCGGCAGCGGCGGCCCCAGCAGCAACGAATCTCGTTGGGGGGAACGGCGG
AGGGGCGGCGGCGCCGCCGCCACCGCCAACGCCCCCATCACCGCCCCACC
TCAACGGCTCCAGCAGTGGTGACGGCAGTGGCAGCGGTGGCGGCGGCAGC
GGCGGCGGCGGCAGCGGCAGCGGCGGCAGACGCAGCTGGGTTCCTGGGAC
AGGGGGCGCCAAAGGTGCTGCGGCGGCCTCCGCCGCCACCGCCGCCATAG
CAGACCGCGAGTCTTTGATCCGCATGGACTTGATCACGCCCAAGGGGGGC
GGCCCGTCCGGCTGCGGCGCGGGGGGGGAAGACCCGGCGGCTGCGGGCGG
TCGTGGCGGCGGCCGCAAGAAATCCTTCAGCAGCTTCCTGTCCCTCCGCC
GGCCATTCTTTGTGGGCGCAGAGAAGAGCGGCGGCGGCGGCGGCGGCGGT
GGCAGCAGCATGAGTACTAGTACTAGCGCCGGCACCGGCATGTCTGGCTT
GCCCATCGTCAGTCACGGCAATGGCCCCAGTGCCCGGGCTGGGGCCGGGG
CTGGGGCGGCGGCGGCGGCGGCGCCTCAGGCTTCTTCCACCAGCTCAGGC
TGGCCCGGGGGGGCATCAGGGTCAGGGTCGTGGTCATCGTCATCTGTGCC
GTCGGAGTCGTCATCGCGAGGCCCAGGGGCCCGGCGCCGCGGCCCGGGGG
CGGCACCAGCACCAGAGGCGGCTGCCAGTGCGGCTGCCCAGGCCGGCCCA
ACACCCCCCCAGGTGGTAACGGCGGCCCCAGCCCAGGCCGTGGAACCCTT
AGCACCGGTGGTCCGTTCCGGTTCCGACGCCAGTGCCATCGCCGCAGCCG
TCGCCGCTGTACCCGCCGGGGCGCGCCACGGGAAGCTGCCCGGGCCGGCA
AGTGGACACAGAGGCGGCCCTGACGCCGCTGATTCCACTCAGGCTACGGC
CCGGGCGGCGGGGGCGGCGGCGACGGTCCGGGCCGGGGGGCCCGCCACCC
CCG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig90:398112..400964+ >mRNA_S-ischiensis_contig90.20880.1 ID=mRNA_S-ischiensis_contig90.20880.1|Name=mRNA_S-ischiensis_contig90.20880.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2886bp|location=Sequence derived from alignment at S-ischiensis_contig90:398112..400964+ (Schizocladia ischiensis KU_0333)
GTTTCTACGCCCTTGGCGAGGCGGGTGGTGAGGCTGGAGAGGCGCACGGC
GCCCCGGGCGGACCCGCTGTGCAGCAAGACGCTGGCGTTTATGCCGCTCT
GTCAGGTTTCTACGCCCTTGGCGAGGCGGGTGGTGAGGCTGGAGAGGCGC
ACGGCGCCCCGGGCGGACCCGCTGTGCAGCAAGACGCTGGCGTTTATGCC
GCTCTGTCAGGTGGCCTTCACTCGGACGGGCCTGGTGACCCTGTGCGGGG
AGGGCTTTCTCAAGCTCTGGACCCGGCCGGCAATGCAGTCACCGCTGCCC
CCGCTCATGCCGCCGGCGGCGGCAGTGGCGGACCGCGCCGGCGACCCGCG
GCACGCAGCGGCGGAGCTGGGCGGGGAATTCGTTTCCCGGGGCAAGGACG
ATGGGGCTGCTGCTGCTTCCTTGCCGGGGCATGGGCAGGTGGCCTTCACT
CGGACGGGCCTGGTGACCCTGTGCGGGGAGGGCTTTCTCAAGCTCTGGAC
CCGGCCGGCAATGCAGTCACCGCTGCCCCCGCTCATGCCGCCGGCGGCGG
CAGTGGCGGACCGCGCCGGCGACCCGCGGCACGCAGCGGCGGAGCTGGGC
GGGGAATTCGTTTCCCGGGGCAAGGACGATGGGGCTGCTGCTGCTTCCTT
GCCGGGGCATGGGCAGGACGAAGAGGCCGCTGTGGAGGCCATCGGCCGCC
TCTCCGTGTCTGTGCCAGAAGACTTGGGAGACGACCATCCCCCTGGGGAC
ATGGCCGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCCCAGCAGCAAC
GAATCTCGTTGGGGGGAACGGCGGAGGGGCGGCGGCGCCGCCGCCACCGC
CAACGCCCCCATCACCGCCCCACCTCAACGGCTCCAGCAGTGGTGACGGC
AGTGGCAGCGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCAGCGGCGG
CAGACGCAGCTGGGTTCCTGGGACAGGGGGCGCCAAAGGTGCTGCGGCGG
CCTCCGCCGCCACCGCCGCCATAGCAGACCGCGAGTCTTTGATCCGCATG
GACTTGATCACGCCCAAGGGGGGCGGCCCGTCCGGCTGCGGCGCGGGGGG
GGAAGACCCGGCGGCTGCGGGCGGTCGTGGCGGCGGCCGCAAGAAATCCT
TCAGCAGCTTCCTGTCCCTCCGCCGGCCATTCTTTGTGGGCGCAGAGAAG
AGCGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCATGAGTACTAGTACTAG
CGCCGGCACCGGCATGTCTGGCTTGCCCATCGTCAGTCACGGCAATGGCC
CCAGTGCCCGGGCTGGGGCCGGGGCTGGGGCGGCGGCGGCGGCGGCGCCT
CAGGCTTCTTCCACCAGCTCAGGCTGGCCCGGGGGGGCATCAGGGTCAGG
GTCGTGGTCATCGTCATCTGTGCCGTCGGAGTCGTCATCGCGAGGCCCAG
GGGCCCGGCGCCGCGGCCCGGGGGCGGCACCAGCACCAGAGGCGGCTGCC
AGTGCGGCTGCCCAGGCCGGCCCAACACCCCCCCAGGTGGTAACGGCGGC
CCCAGCCCAGGCCGTGGAACCCTTAGCACCGGTGGTCCGTTCCGGTTCCG
ACGCCAGTGCCATCGCCGCAGCCGTCGCCGCTGTACCCGCCGGGGCGCGC
CACGGGAAGCTGCCCGGGCCGGCAAGTGGACACAGAGGCGGCCCTGACGC
CGCTGATTCCACTCAGGCTACGGCCCGGGCGGCGGGGGCGGCGGCGACGG
TCCGGGCCGGGGGGCCCGCCACCCCCGACGAAGAGGCCGCTGTGGAGGCC
ATCGGCCGCCTCTCCGTGTCTGTGCCAGAAGACTTGGGAGACGACCATCC
CCCTGGGGACATGGCCGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCC
CAGCAGCAACGAATCTCGTTGGGGGGAACGGCGGAGGGGCGGCGGCGCCG
CCGCCACCGCCAACGCCCCCATCACCGCCCCACCTCAACGGCTCCAGCAG
TGGTGACGGCAGTGGCAGCGGTGGCGGCGGCAGCGGCGGCGGCGGCAGCG
GCAGCGGCGGCAGACGCAGCTGGGTTCCTGGGACAGGGGGCGCCAAAGGT
GCTGCGGCGGCCTCCGCCGCCACCGCCGCCATAGCAGACCGCGAGTCTTT
GATCCGCATGGACTTGATCACGCCCAAGGGGGGCGGCCCGTCCGGCTGCG
GCGCGGGGGGGGAAGACCCGGCGGCTGCGGGCGGTCGTGGCGGCGGCCGC
AAGAAATCCTTCAGCAGCTTCCTGTCCCTCCGCCGGCCATTCTTTGTGGG
CGCAGAGAAGAGCGGCGGCGGCGGCGGCGGCGGTGGCAGCAGCATGAGTA
CTAGTACTAGCGCCGGCACCGGCATGTCTGGCTTGCCCATCGTCAGTCAC
GGCAATGGCCCCAGTGCCCGGGCTGGGGCCGGGGCTGGGGCGGCGGCGGC
GGCGGCGCCTCAGGCTTCTTCCACCAGCTCAGGCTGGCCCGGGGGGGCAT
CAGGGTCAGGGTCGTGGTCATCGTCATCTGTGCCGTCGGAGTCGTCATCG
CGAGGCCCAGGGGCCCGGCGCCGCGGCCCGGGGGCGGCACCAGCACCAGA
GGCGGCTGCCAGTGCGGCTGCCCAGGCCGGCCCAACACCCCCCCAGGTGG
TAACGGCGGCCCCAGCCCAGGCCGTGGAACCCTTAGCACCGGTGGTCCGT
TCCGGTTCCGACGCCAGTGCCATCGCCGCAGCCGTCGCCGCTGTACCCGC
CGGGGCGCGCCACGGGAAGCTGCCCGGGCCGGCAAGTGGACACAGAGGCG
GCCCTGACGCCGCTGATTCCACTCAGGCTACGGCCCGGGCGGCGGGGGCG
GCGGCGACGGTCCGGGCCGGGGGGCCCGCCACCCCC back to top
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