mRNA_S-ischiensis_contig90.20879.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20879.1
Unique NamemRNA_S-ischiensis_contig90.20879.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.050e-24
Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRYKSSERFS 297
            DDAV LW +ETR CVLRGEGHGSWV+ VAFD W+   + YYRF SVGEDARLC+WE DE AG  +L+ G G XXXXXX       G  H RYKSSE  S
Sbjct:  688 DDAVTLWCVETRTCVLRGEGHGSWVTGVAFDYWTSR-RPYYRFTSVGEDARLCMWEHDEMAG--SLLHGAGXXXXXXXXXXXXXXGFQH-RYKSSENLS 782          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 3.840e-22
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRG 213
            DDAV LW +ETR CVLRGEGHGSWV+ VAFD W+   + YYRF SVGEDARLC+WE DE AG  +L+ G G
Sbjct:  657 DDAVTLWCVETRTCVLRGEGHGSWVTGVAFDYWTSR-RPYYRFTSVGEDARLCMWEHDEMAG--SLLHGAG 724          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: A0A086SV32_ACRC1 (Catabolite repression protein-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086SV32_ACRC1)

HSP 1 Score: 82.4 bits (202), Expect = 1.400e-15
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRY 276
            DD + +WS+   A V R +GH SWVS VAFDPW C  +  YRF SVGED RLCLW+F    GV  L R R         S  Q +G + SRY
Sbjct:  446 DDLISIWSMAESALVARCQGHHSWVSAVAFDPWRCD-ERNYRFGSVGEDGRLCLWDF----GVGMLHRPRA-------HSIHQKRGSVSSRY 525          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: UPI0015C36F47 (WD40 repeat n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C36F47)

HSP 1 Score: 82.4 bits (202), Expect = 1.410e-15
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRY 276
            DD + +WS++  A V R +GH SWV+ VAFDPW C  ++Y RF SVGED RLCLW+F     VS L R R          S   +G I SRY
Sbjct:  480 DDLISIWSMDDSALVARCQGHQSWVAAVAFDPWRCDGRSY-RFGSVGEDGRLCLWDFS----VSMLHRPR--------AHSVHHRGSISSRY 558          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: A0A5N6KU65_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KU65_9ROSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.740e-15
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEF 171
            DD V +WS+  RA V R  GH SWVS VAFDPW C  Q  YRFASVGED RL +W+F
Sbjct:  268 DDTVSIWSVTERALVARCNGHKSWVSGVAFDPWRCDDQGNYRFASVGEDCRLLIWDF 324          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: K3UPB6_FUSPC (Uncharacterized protein n=11 Tax=Fusarium TaxID=5506 RepID=K3UPB6_FUSPC)

HSP 1 Score: 81.3 bits (199), Expect = 3.510e-15
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRYKSSER 291
            DD + +WSL   A V R +GH SWVS VAFDPW C  +  YRF SVGED RLCLW+F     V  L R +          S + +G + SRY + +R
Sbjct:  440 DDLISIWSLSESALVARCQGHQSWVSAVAFDPWRCD-ERNYRFGSVGEDGRLCLWDFS----VGMLHRPK--------AQSVRHRGSVSSRYTALQR 523          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: S0EEC0_GIBF5 (Probable WD40 repeat protein CreC n=6 Tax=Fusarium TaxID=5506 RepID=S0EEC0_GIBF5)

HSP 1 Score: 81.3 bits (199), Expect = 3.570e-15
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRYKSSER 291
            DD + +WSL   A V R +GH SWVS VAFDPW C  +  YRF SVGED RLCLW+F     V  L R +          S + +G + SRY + +R
Sbjct:  439 DDLISIWSLSDSALVARCQGHQSWVSAVAFDPWRCD-ERNYRFGSVGEDGRLCLWDFS----VGMLHRPK--------AQSVRHRGSVSSRYTALQR 522          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: A0A559KR74_FUSOX (Putative catabolite repression protein creC n=73 Tax=Fusarium TaxID=5506 RepID=A0A559KR74_FUSOX)

HSP 1 Score: 81.3 bits (199), Expect = 3.590e-15
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEAAGVSALVRGRGGXXXXXXVSSSQLQGQIHSRYKSSER 291
            DD + +WSL   A V R +GH SWVS VAFDPW C  +  YRF SVGED RLCLW+F     V  L R +          S + +G + SRY + +R
Sbjct:  451 DDLISIWSLSDSALVARCQGHQSWVSAVAFDPWRCD-ERNYRFGSVGEDGRLCLWDFS----VGMLHRPK--------AQSVRHRGSVSSRYTALQR 534          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: A0A7S8CXX0_FUSCU (Uncharacterized protein n=5 Tax=Fusarium TaxID=5506 RepID=A0A7S8CXX0_FUSCU)

HSP 1 Score: 80.1 bits (196), Expect = 8.700e-15
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEF 171
            DD + +WSL   A V R +GH SWVS VAFDPW C  +  YRF SVGED RLCLW+F
Sbjct:  384 DDLISIWSLSESALVARCQGHQSWVSAVAFDPWRCD-ERNYRFGSVGEDGRLCLWDF 439          
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Match: C5GTS4_AJEDR (Catabolite repression protein creC n=5 Tax=Blastomyces TaxID=229219 RepID=C5GTS4_AJEDR)

HSP 1 Score: 80.1 bits (196), Expect = 9.010e-15
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDARLCLWEFDEA 180
            DD V +WSL  R  V R +GH SWVSCVAFDPW C  +  YRF SVG+D RL LW+F  A
Sbjct:  430 DDLVSIWSLSERKIVARCQGHHSWVSCVAFDPWRCD-ERNYRFGSVGDDCRLLLWDFSVA 488          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L471_9PHAE5.050e-2463.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Z3_ECTSI3.840e-2267.61Catabolite repression protein creC n=1 Tax=Ectocar... [more]
A0A086SV32_ACRC11.400e-1548.91Catabolite repression protein-like protein n=1 Tax... [more]
UPI0015C36F471.410e-1547.83WD40 repeat n=1 Tax=Geosmithia morbida TaxID=10943... [more]
A0A5N6KU65_9ROSI1.740e-1563.16Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
K3UPB6_FUSPC3.510e-1545.36Uncharacterized protein n=11 Tax=Fusarium TaxID=55... [more]
S0EEC0_GIBF53.570e-1545.36Probable WD40 repeat protein CreC n=6 Tax=Fusarium... [more]
A0A559KR74_FUSOX3.590e-1545.36Putative catabolite repression protein creC n=73 T... [more]
A0A7S8CXX0_FUSCU8.700e-1561.40Uncharacterized protein n=5 Tax=Fusarium TaxID=550... [more]
C5GTS4_AJEDR9.010e-1560.00Catabolite repression protein creC n=5 Tax=Blastom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:395682..397678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.8e-19
Seed eggNOG ortholog2880.D7G1Z3
Preferred namecreC
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016579,GO:0019219,GO:0019222,GO:0019538,GO:0030428,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032153,GO:0032991,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045013,GO:0045892,GO:0045934,GO:0045990,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051286,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0070646,GO:0070647,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.carbon catabolite repression
EggNOG OGsCOG2319@1,KOG2394@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size428
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20879.1prot_S-ischiensis_contig90.20879.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 395682..397678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.5862489-CDS-S-ischiensis_contig90:395681..3957381622817407.5862489-CDS-S-ischiensis_contig90:395681..395738Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 395682..395738 +
1695741091.945621-CDS-S-ischiensis_contig90:395681..3957381695741091.945621-CDS-S-ischiensis_contig90:395681..395738Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 395682..395738 +
1622817407.5973086-CDS-S-ischiensis_contig90:396829..3970071622817407.5973086-CDS-S-ischiensis_contig90:396829..397007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 396830..397007 +
1695741091.9591606-CDS-S-ischiensis_contig90:396829..3970071695741091.9591606-CDS-S-ischiensis_contig90:396829..397007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 396830..397007 +
1622817407.6102607-CDS-S-ischiensis_contig90:397487..3976781622817407.6102607-CDS-S-ischiensis_contig90:397487..397678Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 397488..397678 +
1695741091.9690766-CDS-S-ischiensis_contig90:397487..3976781695741091.9690766-CDS-S-ischiensis_contig90:397487..397678Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 397488..397678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20879.1

>prot_S-ischiensis_contig90.20879.1 ID=prot_S-ischiensis_contig90.20879.1|Name=mRNA_S-ischiensis_contig90.20879.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=142bp
DDAVVLWSLETRACVLRGEGHGSWVSCVAFDPWSCHAQAYYRFASVGEDA
RLCLWEFDEAAGVSALVRGRGGGGAGGGVSSSQLQGQIHSRYKSSERFSD
LGSPASRRSPALASPVHQGSPLGLPLGPASPLNPISPTPNVA
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mRNA from alignment at S-ischiensis_contig90:395682..397678+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20879.1 ID=mRNA_S-ischiensis_contig90.20879.1|Name=mRNA_S-ischiensis_contig90.20879.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1997bp|location=Sequence derived from alignment at S-ischiensis_contig90:395682..397678+ (Schizocladia ischiensis KU_0333)
GACGATGCAGTGGTGCTGTGGAGTCTGGAGACACGGGCGTGCGTGCTGCG CGGGGAGGTGGGTGGAGGGTGTTGTGGCGTGGTGTGGTGTGGTGATAGTA GTGCCTAGTGTTGACCCATCGAGATGGATGGTGAGGGAGCCGTTTGAGGA CGGCGGGACACTCTGTGGTATGATGTGATGTGATGTGTAGCCCAACTACT CTACTCAGATGTATTGCGCTGCACTGTAGTGTACTCTTGCTCGTACTACA GTACTAGCAGTTGGGCATCACATTAGACACTAATGCCATGTAGTGTGATG TGATATCCAGCTATGTACATTGCATCTGAGTAGTTGGACAGCGCATCACC ACAAGTGCCCCGTGGTACTCTAGTGTGAACATGTTCGACCTTCCACCTGG CAAGGCCGGCCGGTTGAAGTGGTAATCGACATTGCAGCCGGTTCAGTTCG GCCGTTTTTTCTGTTAACGGGTAAGTTGTTGCGCGATTACTGCTGTACAC TAGTACACATGGAAAGCATGACGGACGTGAGTGCTGTAGAGTACACGTCT ACGTAGCTCTATGCAGTATATGTACGGCGACTTTGTACTGCACGTCGCGC TCTACAGGCGTCGAGTGCGCCTATAAGTACTAGTACTCGAGTACAGTACT CGATAAGTGAGTTATCAAGTACTTGGTGGTACTCCACAGTACAGTACATG CCTCAAGGGCACAACGCCCCATCGCCTTGTCTTGCCCCCGGACGACACGC CTTGTCTGCAGGGGCACGGGTCCTGGGTCTCCTGCGTGGCCTTTGATCCC TCAACCTATTTCTCGACCGTGTGTGTACTCATGGCGGATGAGGATCGCAC CCTGTGCTTGCCACCGACTCGTGCCAGTATATTCCGTGCTGACCCTGATC GGTCCCCGGGGTAGCCTTGCGGCCATTGGCCACGCAGCCCTACTACGCCG GGCCGGAGCATCCCGGGTTTTCACCGGGCAGACGTTGCTGTACAAATCTA CTTCAAGCAAGTATCTATCTATCGATAGTCGATGTTCGATAGTTTGACCC GCACTAATCCAAGTAGCTAGTACTGCCACCCACAAAATCAGTCGAGGATG CACATCACATCACATCGTTGCTGATCGATATTCCATCGCTGTCTGCAGGG GCACGGGTCCTGGGTGTCGTGCGTGGCCTTTGATCCCTGGAGCTGCCATG CGCAGGCCTACTACCGCTTTGCCTCGGTGGGCGAGGACGCTCGCCTCTGC CTGTGGGAGTTCGACGAGGCGGCAGGCGTCAGCGCCCTCGTACGCGGCAG AGGGGGAGGGGGAGCTGGTGGCGGAGGTGAGTGGAGGAGGAGGGGGGGGG AGAGGTGGAGGACGGGGGGTGGGGGGAGGGGGCGGTGGGGAGGCTGAGGG GGGGGGGGGGAGGAGGAGGGGGGCGGGGAGGGGGAGGGAGAGGAGGAGGA GGAGGAGGAGGAGGAAAGGGGGGGGAGGGGGGGGGAGGAGGAAGGGGGGA GGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGGG GGGGGGGGGATGGAAGGCGGAACTTGGATGCAAGATGCCATGCTGCAGCA CCTCGTTGGATGCAGTACACCTGACCAGGGTTGGCACTTAACCCCGAAGT GGTGCCCTTTTAGGCCCTCAATTAGAGTCAACTACGGGTACTTATTTAGA CCTAAAATGAAGGCTAATTAGGCCCTAGTTACCCTCCAAGCGCCAACCCT ACACCTTTCCCCCCCCCCTCCCCCCGTCCCCCCGCCCGCCCGCAAATCTC ACCCAGTGTCCTCGAGCCAGTTGCAGGGGCAGATACACTCCCGCTACAAG TCCTCCGAGCGGTTCAGCGACCTCGGCTCCCCCGCCAGCCGCCGCTCCCC GGCCCTGGCCTCCCCCGTGCACCAGGGGTCTCCCTTGGGCCTCCCCCTCG GCCCTGCCTCGCCCCTAAACCCAATCTCCCCCACACCGAACGTGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:395682..397678+

>mRNA_S-ischiensis_contig90.20879.1 ID=mRNA_S-ischiensis_contig90.20879.1|Name=mRNA_S-ischiensis_contig90.20879.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=852bp|location=Sequence derived from alignment at S-ischiensis_contig90:395682..397678+ (Schizocladia ischiensis KU_0333)
GACGATGCAGTGGTGCTGTGGAGTCTGGAGACACGGGCGTGCGTGCTGCG
CGGGGAGGACGATGCAGTGGTGCTGTGGAGTCTGGAGACACGGGCGTGCG
TGCTGCGCGGGGAGGGGCACGGGTCCTGGGTGTCGTGCGTGGCCTTTGAT
CCCTGGAGCTGCCATGCGCAGGCCTACTACCGCTTTGCCTCGGTGGGCGA
GGACGCTCGCCTCTGCCTGTGGGAGTTCGACGAGGCGGCAGGCGTCAGCG
CCCTCGTACGCGGCAGAGGGGGAGGGGGAGCTGGTGGCGGAGGGGCACGG
GTCCTGGGTGTCGTGCGTGGCCTTTGATCCCTGGAGCTGCCATGCGCAGG
CCTACTACCGCTTTGCCTCGGTGGGCGAGGACGCTCGCCTCTGCCTGTGG
GAGTTCGACGAGGCGGCAGGCGTCAGCGCCCTCGTACGCGGCAGAGGGGG
AGGGGGAGCTGGTGGCGGAGTGTCCTCGAGCCAGTTGCAGGGGCAGATAC
ACTCCCGCTACAAGTCCTCCGAGCGGTTCAGCGACCTCGGCTCCCCCGCC
AGCCGCCGCTCCCCGGCCCTGGCCTCCCCCGTGCACCAGGGGTCTCCCTT
GGGCCTCCCCCTCGGCCCTGCCTCGCCCCTAAACCCAATCTCCCCCACAC
CGAACGTGGCCTGTCCTCGAGCCAGTTGCAGGGGCAGATACACTCCCGCT
ACAAGTCCTCCGAGCGGTTCAGCGACCTCGGCTCCCCCGCCAGCCGCCGC
TCCCCGGCCCTGGCCTCCCCCGTGCACCAGGGGTCTCCCTTGGGCCTCCC
CCTCGGCCCTGCCTCGCCCCTAAACCCAATCTCCCCCACACCGAACGTGG
CC
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