mRNA_S-ischiensis_contig90.20863.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20863.1
Unique NamemRNA_S-ischiensis_contig90.20863.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig90.20863.1 vs. uniprot
Match: D7G3X8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3X8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.330e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   28 GAFRPGSRVSHHHAMVTSLFERLRAVTSLAQAMQKERHRQAKANKQRFYAGPSD 189
            G  RPGSR +H +A VT LFERL+AVT +A+AMQ ERH +A A + RFY GP+D
Sbjct:  106 GELRPGSRPAHENAAVTFLFERLKAVTEVAEAMQTERHARAAAGQSRFYGGPAD 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3X8_ECTSI2.330e-1161.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:229867..231350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog2880.D7G3X8
Preferred nameSTX18
KEGG koko:K08492
KEGG Pathwayko04130,ko04145,map04130,map04145
GOsGO:0000149,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005938,GO:0006810,GO:0006888,GO:0006890,GO:0006996,GO:0007029,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007528,GO:0008150,GO:0009987,GO:0010256,GO:0010638,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019904,GO:0023052,GO:0031201,GO:0031594,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045202,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050808,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0060628,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0071944,GO:0090158,GO:0098796,GO:0098827,GO:0098916,GO:0099536,GO:0099537,GO:0099568,GO:1902115,GO:1902117,GO:1902953,GO:1903358
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG3894@1,KOG3894@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000920.1
Exons2
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.0711498-CDS-S-ischiensis_contig90:229866..2299951622817410.0711498-CDS-S-ischiensis_contig90:229866..229995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 229867..229995 +
1695741093.8364766-CDS-S-ischiensis_contig90:229866..2299951695741093.8364766-CDS-S-ischiensis_contig90:229866..229995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 229867..229995 +
1622817410.0851972-CDS-S-ischiensis_contig90:231271..2313491622817410.0851972-CDS-S-ischiensis_contig90:231271..231349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 231272..231349 +
1695741093.8559353-CDS-S-ischiensis_contig90:231271..2313491695741093.8559353-CDS-S-ischiensis_contig90:231271..231349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 231272..231349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20863.1prot_S-ischiensis_contig90.20863.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 229867..231349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20863.1

>prot_S-ischiensis_contig90.20863.1 ID=prot_S-ischiensis_contig90.20863.1|Name=mRNA_S-ischiensis_contig90.20863.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=69bp
GGGATPDQEGAFRPGSRVSHHHAMVTSLFERLRAVTSLAQAMQKERHRQA
KANKQRFYAGPSDGDLRGT
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mRNA from alignment at S-ischiensis_contig90:229867..231350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20863.1 ID=mRNA_S-ischiensis_contig90.20863.1|Name=mRNA_S-ischiensis_contig90.20863.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1484bp|location=Sequence derived from alignment at S-ischiensis_contig90:229867..231350+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGGCAACGCCTGACCAGGAAGGGGCATTTCGCCCCGGTTCCAG
GGTGTCGCACCACCACGCCATGGTGACAAGCCTGTTTGAGAGACTGCGGG
CGGTGACGTCCTTGGCGCAGGCGATGCAGGTGATGCCGGTGCAGGTGGCC
TATCTACCCCTTAGAGCAACTGCCGTACACTACAATACTACAGTATGTTG
TACCTACTCTAGCGTGGTGCTGTACTGTACTGTACTCGAATACAGCAGTA
TATATGTACTCACGTTGCGCTTGCCGTAGCCCCGAGACCTTTGACCACGC
GCCTCGGTCGAGACAGAGCAGTTAATACTCTCTGTACCTGCTACTGTAGC
GTGGTGCTGTACTGTACCGTAGTACAAGGGCGAAATACATGTACTCGTAT
GTACTGTACGCACAACGTGCTTGCCGTACAATGGAAGCAAGTAGTCCTGA
GACCGCTGACCACGCGCCTCCACCGGGCCGAGCAGTGCGTGCTGCTTCAG
TGTAGGCATTCAAAGCACTACTACTGTATTCTAGTGTATATGATGTCTCT
GTGTGTGTGTTTACTCACGTTGGGATGAGCGTGCAATGGCAATAGGGCCG
CAGCAGCGCGTGCTGCTTCAGTGTAAGCATTCAAAGTACTACTGTACTGC
TCAAGTATATATGGTTTAATATGTGTGCGTGTGTGTTTGCCCACGTTGCG
ATGAGCGTGCAATGCAAAGTCCCGAGACCGTTGACCAGGCTCCTCACTCG
ACCTACAATAGACGGATGTGATGTGATGTGCACTGACGGATGTGATGTGA
TGTGCACTCTGCAGTGCTGTACTACTGTAGTAGTTTGACATCGCCGTTGC
ACCCCGACCACTGCGACGTAGTAGTAGCCACCATTGCGCCCCGCACGTTG
CTCGTGCTTTGGGGGGTTCAGGTCTAGGCCAACCCACACACGCACGTTCG
CACACACGCGCGCGCGCACGCACACGCACACACACAAGGCCAGAAAGGTG
CTGATTTATGCGTCGTTAAGCGGCCCAGGCTAACCCAGTTTCCTGGCTGC
ACGCACAACTCAACACGCACGCACACACATGTGCACGCGCGCGCACACAC
GCACACAAGCACACACACACATACACACACGCAGAAAGAGAAAGAACGAC
ATCACCAGGCCAAGGCCAACAAGCAGCGCTTCTACGCACACACACGCACA
CACGCACGCACACACACACACAGAAAGAACAACACCGCCAGGCCAAGGCC
AACAAGCAGCGCTTCTACGCACGCGCACACACATGCTTGTGGCGCACACA
CACACACACACACACGCGCGCGCGCGCGCACACACATACACACACGCACG
TATGCACGCACACCCACACGCACGCACGCACACACGCACACACACACACA
CACAGAAAGAACGACATCGCCAGGCCAAGGCCAACAAGCAGCGCTTCTAC
GCGGGGCCCTCGGACGGCGACCTGCGGGGCACAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:229867..231350+

>mRNA_S-ischiensis_contig90.20863.1 ID=mRNA_S-ischiensis_contig90.20863.1|Name=mRNA_S-ischiensis_contig90.20863.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=414bp|location=Sequence derived from alignment at S-ischiensis_contig90:229867..231350+ (Schizocladia ischiensis KU_0333)
GGGGGGGGGGCAACGCCTGACCAGGAAGGGGCATTTCGCCCCGGTTCCAG
GGTGTCGCACCACCACGCCATGGTGACAAGCCTGTTTGAGAGACTGCGGG
CGGTGACGTCCTTGGCGCAGGCGATGCAGGGGGGGGGGGCAACGCCTGAC
CAGGAAGGGGCATTTCGCCCCGGTTCCAGGGTGTCGCACCACCACGCCAT
GGTGACAAGCCTGTTTGAGAGACTGCGGGCGGTGACGTCCTTGGCGCAGG
CGATGCAGAAAGAACGACATCGCCAGGCCAAGGCCAACAAGCAGCGCTTC
TACGCGGGGCCCTCGGACGGCGACCTGCGGGGCACAAAAGAACGACATCG
CCAGGCCAAGGCCAACAAGCAGCGCTTCTACGCGGGGCCCTCGGACGGCG
ACCTGCGGGGCACA
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