mRNA_S-ischiensis_contig90.20847.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig90.20847.1
Unique NamemRNA_S-ischiensis_contig90.20847.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig90.20847.1 vs. uniprot
Match: D8LKQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-8
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:   36 AGAKVAHLSTLRWTGDG-NPWDAPPASPPPVFVGNGRRAWHGGLITTNKNQALAGFLRRKLEKGEELTTAQVALLKEMAH 272
            A +K   L       DG NPW+    +PPP+     R AW GG I +NK++ALA FLRRK+++G+ LT  Q+A+L+ MA+
Sbjct:    3 APSKTVCLRAFNKDLDGTNPWERQGPTPPPLPK---RIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMAMLRRMAY 79
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BLAST of mRNA_S-ischiensis_contig90.20847.1 vs. uniprot
Match: A0A6H5L4S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-8
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:   36 AGAKVAHLSTLRWTGDG-NPWDAPPASPPPVFVGNGRRAWHGGLITTNKNQALAGFLRRKLEKGEELTTAQVALLKEMAH 272
            A +K   L       DG NPW+    +PPP+     R AW GG I +NK++ALA FLRRK+++G+ LT  Q+ +LK MA+
Sbjct:    3 APSKTVCLRAFNKDLDGTNPWERQGPAPPPLPK---RIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMTMLKRMAY 79
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig90.20847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ8_ECTSI1.160e-843.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4S5_9PHAE3.020e-843.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig90contigS-ischiensis_contig90:72867..76067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size683
Cds size651
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig90.20847.1prot_S-ischiensis_contig90.20847.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig90 72899..76067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817406.9930158-UTR-S-ischiensis_contig90:72866..728981622817406.9930158-UTR-S-ischiensis_contig90:72866..72898Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 72867..72898 +
1695741091.5338671-UTR-S-ischiensis_contig90:72866..728981695741091.5338671-UTR-S-ischiensis_contig90:72866..72898Schizocladia ischiensis KU_0333UTRS-ischiensis_contig90 72867..72898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.0047963-CDS-S-ischiensis_contig90:72898..730081622817407.0047963-CDS-S-ischiensis_contig90:72898..73008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 72899..73008 +
1695741091.5473857-CDS-S-ischiensis_contig90:72898..730081695741091.5473857-CDS-S-ischiensis_contig90:72898..73008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 72899..73008 +
1622817407.0163527-CDS-S-ischiensis_contig90:73211..733141622817407.0163527-CDS-S-ischiensis_contig90:73211..73314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 73212..73314 +
1695741091.558769-CDS-S-ischiensis_contig90:73211..733141695741091.558769-CDS-S-ischiensis_contig90:73211..73314Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 73212..73314 +
1622817407.030928-CDS-S-ischiensis_contig90:74089..743741622817407.030928-CDS-S-ischiensis_contig90:74089..74374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 74090..74374 +
1695741091.569503-CDS-S-ischiensis_contig90:74089..743741695741091.569503-CDS-S-ischiensis_contig90:74089..74374Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 74090..74374 +
1622817407.0428598-CDS-S-ischiensis_contig90:75914..760671622817407.0428598-CDS-S-ischiensis_contig90:75914..76067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 75915..76067 +
1695741091.583769-CDS-S-ischiensis_contig90:75914..760671695741091.583769-CDS-S-ischiensis_contig90:75914..76067Schizocladia ischiensis KU_0333CDSS-ischiensis_contig90 75915..76067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig90.20847.1

>prot_S-ischiensis_contig90.20847.1 ID=prot_S-ischiensis_contig90.20847.1|Name=mRNA_S-ischiensis_contig90.20847.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=217bp
MAGAKVAHLSTLRWTGDGNPWDAPPASPPPVFVGNGRRAWHGGLITTNKN
QALAGFLRRKLEKGEELTTAQVALLKEMAHQAPTPTAAAAELVRRDTSTA
AAAATHARGDRAPNRGSDGGRRAKGRRGRGGKREGSVVEPSGGDDSGTTA
AVRATLVAWLKKVEDQPSCLEPTRKRPRSSREEEDDGDNYDDDGGGGGDG
GGGGSSHRGLSRGQQPP
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mRNA from alignment at S-ischiensis_contig90:72867..76067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig90.20847.1 ID=mRNA_S-ischiensis_contig90.20847.1|Name=mRNA_S-ischiensis_contig90.20847.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3201bp|location=Sequence derived from alignment at S-ischiensis_contig90:72867..76067+ (Schizocladia ischiensis KU_0333)
GTAGTCGGCGACGAAGATACAGAACAAGGGCAATGGCGGGCGCCAAGGTT
GCACATCTGTCCACGCTGCGGTGGACCGGAGATGGGAACCCGTGGGACGC
CCCGCCGGCCAGTCCGCCTCCCGTCTTCGTCGGGAACGGTCGGTAAGTTC
AAGCAGCATTGGGAGTTTTGAGTTTCCCGGGACTGCGGAATCCGCGCACG
CACTTCCTAAGGGTGTCCCCGCAGCGGTGACGACGGTGTTCCAGGCTCTT
GCGAGACAACCCTTCAAGGCGTGAGCGGTTTGGCGGGCACTGACCGGCCC
TCCCTCCCTCGCCGGCCGCCGTTTTTCTTGTCTCGTTTCGCGCAGGCGGG
CGTGGCACGGGGGCCTAATCACGACCAACAAGAACCAGGCATTAGCAGGC
TTCCTGCGACGCAAGCTTGAGAAGGGGGAGGAGCTTACCACGGCGCAGGT
GCCCTTTTGGAAGCAGTGCTGCCGTGTTCTGCACAGCTAAATACTTATCC
TGGTGCACATGGCCGAGCGGGCACGGAATATGTCTGCTGTAGTGATTCGT
ATAAATTGTAACGAGGTACAATCGCACGTGTGTGAGATTGACTGTTCTCG
TATTAGTAGTTGTCCCATTTAAGAATTTAGTGTTCTTATGTTAGTGATTG
TCACATCAAGGAACTAAGAACAAGGAGGCGGGCGGGGGAAAGGGGGGGAG
GAATATGTCTACTGTAGCGCGCGGCCGTTGATAGGGCCTCCCTCTCCTCT
CAGGCCTCCTGGGATATATACATAGATAGGGAGAATTGGCGTGTGCTGCC
GCTTGTGCTGCTTGCACGAAGGCGACGAGGCATTATAGGCGACGGACGGC
ACCTCTATGCATGCGGTGCATGCACATTCCAAACATAGCTACAGTACAGT
ACTTCTACTACTCCAGTACGAGTACTATTTGTATGTAGAACATAGTATGT
GTAGTTGCCCCCCGCGTCTCGTGTGTAAAAATACCCTACAGCACTTGCGT
AAGTACACAGTAGTAATACCACTAGTACAATCATCCTTCTGCCTGCAGTG
TGCGCTAGATGGCCCTCGGCCTGAAATATGCGCTACAGTCGATAACGCTG
TGCCTGCAGTATACCCTACTCCGATCACACTCTGGATGGTGAGCCGCGGG
AGGTGTATTCCCCTGGCAAACTCAACAGCACACCTCTCGATGCGCCATCT
CTGCCGTGCTATTGTATCCCCAGGTGGCCCTGCTAAAAGAAATGGCTCAC
CAGGCTCCCACACCCACTGCCGCCGCAGCGGAATTGGTTCGGCGCGATAC
GAGCACCGCCGCTGCCGCTGCGACGCACGCAAGAGGGGATCGTGCGCCGA
ACAGGGGTTCGGACGGAGGGCGGCGAGCTAAGGGCAGGCGGGGGCGGGGA
GGCAAAAGGGAGGGCTCGGTAGTGGAACCGTCCGGTGGGGATGATTCTGG
AACGACGGCTGCTGTCCGGGCGACCCTGGTGGCCTGGCTGAAGAAGGTGG
AAGACCAGGTGGGGTGTGTGTGCGTGCGTGTGTGCATGCGTGTGTGCGTG
CATGCGTGTGTGCGTGCATGCATGCGTGCGTGCATGCGACCCTCATAGCC
TGGCTGAAGAAGGTGGAAGATCAGGTGCGGTGTGTGTGCGTGCGTGCGTA
CGTGTGTGCGTGCATGCATGTGTGCGTGCATGTGTGCGTGCGTGCATGCG
TGCGTGCGTGCGTGCGTGCGACCGTTGTGGCCTGGCTGAAGAGGGTGGAA
GATCAGGTGCGGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGACCC
TCGTGGCCTGGCTGAAGAAGGTGGAACATCAGGTGCGGTGTGCGGCATTG
ATGGAATATCTAAGCAAATCACCCTATTTATCGACAGTAATGATCTATAT
ATCTATCGATAGTCGATATTCCATAGTTGACCCACACTAAGTCCAAGTTG
TCAGTAACGCCACCCACAAAATCAGACCAGCCCGATAACTATCTACTCAT
GGATGATATTCCATCACTGGTGAGATGTGCGGCGGGCGGCTGTGCGTGCA
TGCATGCATATGTGCGTGTGTGCGTGCGTGCGTGTACGTGTGCTTGGCCG
CCGCGCAAGAAGAACAAGACAGGCGGGAGACGAGAAAGAAGACTTGCTTC
GGGGCGCTTGGGGAGCGAGGGCTCGATTGTGTGCCGTGCTGCATCTGCTG
TGCTTGATGCTACTGTACGTTAGTACAGTGCACTACAGTAGAGTACTTTT
TCCTGTACAAGTACTCTCAAGTACTCGTTCTTACTTCCGGAGTATGTAGG
AAGGTACTACTTTGAGGGCAAACCCGAAGTTTCGACTTGGGGCTGTCGGC
ATTCATGCGAGGTTATGTCGCAAAACAAGCCAATGAGTACATTTAGATAC
TACTTGCACTTCCGCAGTACATTATTCACTAGTGCCTCCTACTACACCTA
TTACAGCAGCACCATAGTAGTTTACTTGGCCATGTGTGCGAGCAGTACAA
GACGTGGAAGTACCAGTCAACCCTAGGCTTATAGCTTGTGCACCTCGCCT
GATGATAAAATTCGTACTTCGAAGTACTTGGTATATACCCTCGGCTGCTA
CAGCAAGTACCCACCCCCGGGCCGGTGGCCTCTTCTCCCCTTCCTCTTGG
CCACCTGCGAACAGTGATTGAATATCGAAGCAGATCAACGTATTTATCGA
CAGTACTGATTTGAAACTATTTTATATGGCATGCGAGTTCCGGGCCCCGT
CCCAACAACCTAAGGTGGGGACCTCACCCGAAGCCCTTCGCACTCGCAAA
AAATACTCAAGAAAATATCTATATATCTATCGATAGCCGGTATTCGATAG
TTTGATCCACACTAAACCCAAGTATTAGCAGGAACAACACAGGGCGAGGT
GCGGGCCACGTCACTAGAGACCTCAACAAACCCCAAGTAGTTCGTAACAC
CACCCACGACATCAGTCGAGCCCGATAACTTTCTACTGATCGATATTCCA
TCACTGCCTGCGAACGTACCTGCCCACACGTGCTCCCCGCCCGTCCAGCC
CTCCTGCCTTGAGCCCACCCGGAAGCGCCCCCGATCCTCACGGGAGGAGG
AGGACGATGGCGACAACTACGACGACGACGGCGGCGGCGGCGGCGACGGC
GGCGGCGGGGGTTCGAGTCACCGCGGGCTCTCGCGAGGGCAACAACCGCC
T
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Coding sequence (CDS) from alignment at S-ischiensis_contig90:72867..76067+

>mRNA_S-ischiensis_contig90.20847.1 ID=mRNA_S-ischiensis_contig90.20847.1|Name=mRNA_S-ischiensis_contig90.20847.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1302bp|location=Sequence derived from alignment at S-ischiensis_contig90:72867..76067+ (Schizocladia ischiensis KU_0333)
ATGGCGGGCGCCAAGGTTGCACATCTGTCCACGCTGCGGTGGACCGGAGA
TGGGAACCCGTGGGACGCCCCGCCGGCCAGTCCGCCTCCCGTCTTCGTCG
GGAACGGTCGATGGCGGGCGCCAAGGTTGCACATCTGTCCACGCTGCGGT
GGACCGGAGATGGGAACCCGTGGGACGCCCCGCCGGCCAGTCCGCCTCCC
GTCTTCGTCGGGAACGGTCGGCGGGCGTGGCACGGGGGCCTAATCACGAC
CAACAAGAACCAGGCATTAGCAGGCTTCCTGCGACGCAAGCTTGAGAAGG
GGGAGGAGCTTACCACGGCGCAGGCGGGCGTGGCACGGGGGCCTAATCAC
GACCAACAAGAACCAGGCATTAGCAGGCTTCCTGCGACGCAAGCTTGAGA
AGGGGGAGGAGCTTACCACGGCGCAGGTGGCCCTGCTAAAAGAAATGGCT
CACCAGGCTCCCACACCCACTGCCGCCGCAGCGGAATTGGTTCGGCGCGA
TACGAGCACCGCCGCTGCCGCTGCGACGCACGCAAGAGGGGATCGTGCGC
CGAACAGGGGTTCGGACGGAGGGCGGCGAGCTAAGGGCAGGCGGGGGCGG
GGAGGCAAAAGGGAGGGCTCGGTAGTGGAACCGTCCGGTGGGGATGATTC
TGGAACGACGGCTGCTGTCCGGGCGACCCTGGTGGCCTGGCTGAAGAAGG
TGGAAGACCAGGTGGCCCTGCTAAAAGAAATGGCTCACCAGGCTCCCACA
CCCACTGCCGCCGCAGCGGAATTGGTTCGGCGCGATACGAGCACCGCCGC
TGCCGCTGCGACGCACGCAAGAGGGGATCGTGCGCCGAACAGGGGTTCGG
ACGGAGGGCGGCGAGCTAAGGGCAGGCGGGGGCGGGGAGGCAAAAGGGAG
GGCTCGGTAGTGGAACCGTCCGGTGGGGATGATTCTGGAACGACGGCTGC
TGTCCGGGCGACCCTGGTGGCCTGGCTGAAGAAGGTGGAAGACCAGCCCT
CCTGCCTTGAGCCCACCCGGAAGCGCCCCCGATCCTCACGGGAGGAGGAG
GACGATGGCGACAACTACGACGACGACGGCGGCGGCGGCGGCGACGGCGG
CGGCGGGGGTTCGAGTCACCGCGGGCTCTCGCGAGGGCAACAACCGCCTC
CCTCCTGCCTTGAGCCCACCCGGAAGCGCCCCCGATCCTCACGGGAGGAG
GAGGACGATGGCGACAACTACGACGACGACGGCGGCGGCGGCGGCGACGG
CGGCGGCGGGGGTTCGAGTCACCGCGGGCTCTCGCGAGGGCAACAACCGC
CT
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