mRNA_S-ischiensis_contig9.20784.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20784.1
Unique NamemRNA_S-ischiensis_contig9.20784.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-17
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 2 
Query:    8 GGSVATAPMEEE-----VYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSEAEPRRHRGGYAHR 229
            G   AT   EE+     VYC+CRGGD GGVMV CD C EWYH  CVGL  +   + + Y C+VC EA P +H G Y HR
Sbjct: 1472 GAQSATVVQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHASCVGLTAQTAGELQQYRCLVCCEAHPEKH-GPYKHR 1549
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A164NC75_9CRUS (CXXC-type zinc finger protein 1 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164NC75_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 1.470e-10
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:   32 MEEEVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSEAEP 199
            +EE+VYC+CR  D    M+GCD+CEEWYH  C+ +   + R  + + C  C + +P
Sbjct:   30 LEEQVYCICRSSDASRFMIGCDYCEEWYHGDCIDITEEESRFIKKFFCPKCRQRDP 85
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A0P5HZJ2_9CRUS (CXXC-type zinc finger protein 1 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5HZJ2_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-10
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:   32 MEEEVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSEAEP 199
            +EE+VYC+CR  D    M+GCD+CEEWYH  C+ +   + R  + + C  C + +P
Sbjct:   30 LEEQVYCICRSSDASRFMIGCDYCEEWYHGDCIDITEEESRFIKKFFCPKCRQRDP 85
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: E9HNH3_DAPPU (CXXC-type zinc finger protein 1 n=4 Tax=Daphnia TaxID=6668 RepID=E9HNH3_DAPPU)

HSP 1 Score: 66.2 bits (160), Expect = 4.050e-10
Identity = 22/56 (39.29%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:   32 MEEEVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSEAEP 199
            +EE+VYC+CR  D    M+GCD+CE+WYH  C+ +   + R  + + C  C + +P
Sbjct:   30 LEEQVYCICRSSDASRFMIGCDYCEDWYHGDCIDITEEESRFIKKFFCPKCRQRDP 85
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A6H5L4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.950e-10
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:   41 EVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSE 190
            EVYC+CR  D  G M+ CDFC++W+HV CVGL  +   +   YAC +C++
Sbjct:  395 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTK 444
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.200e-10
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:   41 EVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSE 190
            EVYC+CR  D  G M+ CDFC++W+HV CVGL  +   +   YAC +C++
Sbjct: 3384 EVYCVCRTADVTGTMLECDFCQDWFHVRCVGLTEQDCDRFSKYACPLCTK 3433
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A7S0RU55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RU55_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-8
Identity = 24/55 (43.64%), Postives = 30/55 (54.55%), Query Frame = 2 
Query:   41 EVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRK---DRAYACMVCSEAE 196
            ++YC CR  D G  M+GCD+C+ WYH  CVGL    + K   D  Y C  C   E
Sbjct:  104 QLYCKCRSPDDGRFMIGCDYCDGWYHPACVGLKESAVAKWGDDHKYMCAACQRKE 158
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A3B4B9P6_9GOBI (CXXC-type zinc finger protein 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4B9P6_9GOBI)

HSP 1 Score: 61.6 bits (148), Expect = 1.660e-8
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 2 
Query:   44 VYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSEAEP 199
            +YC+CR  D    M+GCD+C EW+H  C+ +  +Q +  R + CM C E  P
Sbjct:   34 LYCICRKPDINCFMIGCDYCNEWFHGHCINITEKQAKAIRQWYCMKCREENP 85
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A167DYW9_9ASCO (Spp1p n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167DYW9_9ASCO)

HSP 1 Score: 61.2 bits (147), Expect = 2.180e-8
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:   11 GSVA-TAPMEEE--VYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCSE 190
            GSV  T   +EE  VYC+CR GD G  M+GCDFC++W+H  C+ +   + +    +AC +C E
Sbjct:  155 GSVTYTESSDEESTVYCICRTGDDGRWMIGCDFCDDWFHGDCINMDTVKAKLVMKFACPLCQE 217
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BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Match: A0A8K1C3S4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3S4_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 4.650e-8
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 2 
Query:   41 EVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMVCS 187
            E YC+CR   Y G M+GCD+C++W+H +C+GL   +  K   Y C  CS
Sbjct: 1225 ERYCVCR-QPYDGFMIGCDYCDDWFHDVCIGLSKEKAEKVENYTCPSCS 1272
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN51_ECTSI1.720e-1751.90Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A164NC75_9CRUS1.470e-1041.07CXXC-type zinc finger protein 1 n=1 Tax=Daphnia ma... [more]
A0A0P5HZJ2_9CRUS1.600e-1041.07CXXC-type zinc finger protein 1 n=2 Tax=Daphnia ma... [more]
E9HNH3_DAPPU4.050e-1039.29CXXC-type zinc finger protein 1 n=4 Tax=Daphnia Ta... [more]
A0A6H5L4N3_9PHAE5.950e-1048.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZH6_ECTSI6.200e-1048.00WD repeat domain-containing protein, putative n=1 ... [more]
A0A7S0RU55_9CHLO1.250e-843.64Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A3B4B9P6_9GOBI1.660e-840.38CXXC-type zinc finger protein 1 n=1 Tax=Periophtha... [more]
A0A167DYW9_9ASCO2.180e-842.86Spp1p n=1 Tax=Sugiyamaella lignohabitans TaxID=796... [more]
A0A8K1C3S4_PYTOL4.650e-844.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3195605..3196748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size389
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20784.1prot_S-ischiensis_contig9.20784.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3195605..3196717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.8751369-CDS-S-ischiensis_contig9:3195604..31957641622817401.8751369-CDS-S-ischiensis_contig9:3195604..3195764Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3195605..3195764 -
1695741087.30633-CDS-S-ischiensis_contig9:3195604..31957641695741087.30633-CDS-S-ischiensis_contig9:3195604..3195764Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3195605..3195764 -
1622817401.8861353-CDS-S-ischiensis_contig9:3196174..31962761622817401.8861353-CDS-S-ischiensis_contig9:3196174..3196276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3196175..3196276 -
1695741087.3261752-CDS-S-ischiensis_contig9:3196174..31962761695741087.3261752-CDS-S-ischiensis_contig9:3196174..3196276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3196175..3196276 -
1622817401.8977695-CDS-S-ischiensis_contig9:3196622..31967171622817401.8977695-CDS-S-ischiensis_contig9:3196622..3196717Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3196623..3196717 -
1695741087.3406246-CDS-S-ischiensis_contig9:3196622..31967171695741087.3406246-CDS-S-ischiensis_contig9:3196622..3196717Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3196623..3196717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.9084785-UTR-S-ischiensis_contig9:3196717..31967481622817401.9084785-UTR-S-ischiensis_contig9:3196717..3196748Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3196718..3196748 -
1695741087.3556771-UTR-S-ischiensis_contig9:3196717..31967481695741087.3556771-UTR-S-ischiensis_contig9:3196717..3196748Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 3196718..3196748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20784.1

>prot_S-ischiensis_contig9.20784.1 ID=prot_S-ischiensis_contig9.20784.1|Name=mRNA_S-ischiensis_contig9.20784.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
MEEEVYCLCRGGDYGGVMVGCDFCEEWYHVICVGLVPRQLRKDRAYACMV
CSEAEPRRHRGGYAHRWITSAGVQEKADIIKKRARVAAAAAAAAAPSPTP
AASAVVATAAAEETMAATR
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mRNA from alignment at S-ischiensis_contig9:3195605..3196748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20784.1 ID=mRNA_S-ischiensis_contig9.20784.1|Name=mRNA_S-ischiensis_contig9.20784.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1144bp|location=Sequence derived from alignment at S-ischiensis_contig9:3195605..3196748- (Schizocladia ischiensis KU_0333)
AGGACGAGGAGGAAGCGTGGCGACCGCGCCGATGGAGGAGGAAGTGTACT
GCCTGTGCCGCGGTGGGGACTACGGGGGTGTGATGGTGGGCTGCGACTTC
TGTGAGGAGTGGTACCATGTGATATGGTGAGTGGAGGGCACGGCATGAGC
GGGTTGAGAGAGCCGCCTCCAGTGAGTGAATAGCTTGGAGTGCGTGCATT
GCGGTGGTCCGTCCCATTGTGTCGGCCATGCGGGGCGCGTGGTCATTTGG
TCGTGTGGCCGCACGGCTGTGGCTGGCAACGGATAAGTACTTCCCTCTCT
GCCCTCCCTCCCTCCCGCCCGCCCTCCCTGCCTGCCTCCCTCCCTCCCTC
CCTCCCTGCCTGCCTGCCTGCCTGCCTCCCTGTCTGCTTGCCTGCCTTAC
TCTCTTCCTGTCTCTCTCGAAAATACCTTAGAACCCCCCTCTCGCACCCC
ATCCTTTTCGCCCTCTGTTCAGTGTGGGCCTTGTCCCACGGCAGCTCCGC
AAGGACCGGGCGTATGCGTGCATGGTGTGCAGCGAGGCCGAACCGCGGCG
CCACCGGGGGGGCTACGCGCACAGGTGCGAGGGACTTGAGCGGGTGGGTT
GCGTGCGGACGCAAAGCTATGGTAGTACAGTAGTACGTAAACACTTTTGC
GAGGAGTCAAGAGAGAGGTGCTTGCTCGCCCCCCCCCCCCAGTCTCAGTG
CCCCAGTGCCCCCCCCCCACCCCGATGATAGCTGAGTGCTTTGAACTACC
ACTATACAGTACTCGAGTACGGTACTTCTGGAAAGTATGCCCAGTACAGT
ACGTACTGTGTGTAGTACCGTAATCTTTTCGAAGTAACTCTTTGGTGCAA
TGCCAAACAACTACTCTAGGTAGGTACTTCGAAGTATTTCGACTTTGCCA
AGCAACTCGTTTTGCCCCCACAAACACATCATGAGCATCCTCCCCCCCGG
CCGCCCGCGCTCCCACCATGCCCGCCACCGCCAGGTGGATAACCAGCGCA
GGCGTCCAAGAGAAGGCCGACATCATCAAAAAGCGGGCACGTGTCGCCGC
TGCCGCCGCCGCCGCCGCCGCACCCTCACCCACACCCGCCGCATCCGCAG
TGGTGGCAACGGCGGCGGCGGAGGAGACAATGGCGGCGACACGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3195605..3196748-

>mRNA_S-ischiensis_contig9.20784.1 ID=mRNA_S-ischiensis_contig9.20784.1|Name=mRNA_S-ischiensis_contig9.20784.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig9:3195605..3196748- (Schizocladia ischiensis KU_0333)
ATGGAGGAGGAAGTGTACTGCCTGTGCCGCGGTGGGGACTACGGGGGTGT
GATGGTGGGCTGCGACTTCTGTGAGGAGTGGTACCATGTGATATGATGGA
GGAGGAAGTGTACTGCCTGTGCCGCGGTGGGGACTACGGGGGTGTGATGG
TGGGCTGCGACTTCTGTGAGGAGTGGTACCATGTGATATGTGTGGGCCTT
GTCCCACGGCAGCTCCGCAAGGACCGGGCGTATGCGTGCATGGTGTGCAG
CGAGGCCGAACCGCGGCGCCACCGGGGGGGCTACGCGCACAGTGTGGGCC
TTGTCCCACGGCAGCTCCGCAAGGACCGGGCGTATGCGTGCATGGTGTGC
AGCGAGGCCGAACCGCGGCGCCACCGGGGGGGCTACGCGCACAGGTGGAT
AACCAGCGCAGGCGTCCAAGAGAAGGCCGACATCATCAAAAAGCGGGCAC
GTGTCGCCGCTGCCGCCGCCGCCGCCGCCGCACCCTCACCCACACCCGCC
GCATCCGCAGTGGTGGCAACGGCGGCGGCGGAGGAGACAATGGCGGCGAC
ACGGGTGGATAACCAGCGCAGGCGTCCAAGAGAAGGCCGACATCATCAAA
AAGCGGGCACGTGTCGCCGCTGCCGCCGCCGCCGCCGCCGCACCCTCACC
CACACCCGCCGCATCCGCAGTGGTGGCAACGGCGGCGGCGGAGGAGACAA
TGGCGGCGACACGG
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