mRNA_S-ischiensis_contig9.20777.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20777.1
Unique NamemRNA_S-ischiensis_contig9.20777.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.700e-21
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:   64 SDAICRCLGNVFTCLATAYLPFAELPGVAEHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGGGGDYASPAGLHRSVMEEGLRQAILLLVARTEYP-----GNGGDEAWACMAEEDRDELTAFREQVRELLRTIALPA 510
            S+ +CRCL  VF   A AYLP    P +  HW +L+Q +  + E+PSL+IASL L++WG +G+ L          A GG G  + P       +EE +R A  + + R  YP     G GG      M E+ RDEL  FR+QV++LL+T+ +PA
Sbjct:  314 SEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTET-------AAGGRGPRSPP-------LEESVRHACRVSMLRARYPSDESGGLGG------MDEDSRDELEDFRDQVQDLLQTLIMPA 447
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BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.050e-20
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:   64 SDAICRCLGNVFTCLATAYLPFAELPGVAEHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGGGGDYASPAGLHRSVMEEGLRQAILLLVARTEYP-----GNGGDEAWACMAEEDRDELTAFREQVRELLRTIALPA 510
            S+ +CRCL  VF   A AYLP    P +  HW +L+Q +  +  +PSL+IASL L++WG +G+ L          A GG G  + P       +EE +R+A  + + R  YP     G GG      M E+ RDEL  FR+QV+ELL+T+ +PA
Sbjct:  308 SEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLNHPSLEIASLALEFWGMLGELLTET-------AAGGRGPRSPP-------LEESVRRACKVSMLRARYPSDDCGGLGG------MDEDSRDELEDFRDQVQELLQTLIMPA 441
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSA2_ECTSI7.700e-2138.96Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE1.050e-2038.96Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3150009..3153544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog2880.D7FSA2
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size650
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20777.1prot_S-ischiensis_contig9.20777.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 3150009..3153543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.3583727-CDS-S-ischiensis_contig9:3150008..31501821622817401.3583727-CDS-S-ischiensis_contig9:3150008..3150182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3150009..3150182 +
1695741086.8183262-CDS-S-ischiensis_contig9:3150008..31501821695741086.8183262-CDS-S-ischiensis_contig9:3150008..3150182Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3150009..3150182 +
1622817401.3697047-CDS-S-ischiensis_contig9:3151584..31517881622817401.3697047-CDS-S-ischiensis_contig9:3151584..3151788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3151585..3151788 +
1695741086.83375-CDS-S-ischiensis_contig9:3151584..31517881695741086.83375-CDS-S-ischiensis_contig9:3151584..3151788Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3151585..3151788 +
1622817401.3808675-CDS-S-ischiensis_contig9:3152743..31528391622817401.3808675-CDS-S-ischiensis_contig9:3152743..3152839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3152744..3152839 +
1695741086.843525-CDS-S-ischiensis_contig9:3152743..31528391695741086.843525-CDS-S-ischiensis_contig9:3152743..3152839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3152744..3152839 +
1622817401.3920624-CDS-S-ischiensis_contig9:3153369..31535431622817401.3920624-CDS-S-ischiensis_contig9:3153369..3153543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3153370..3153543 +
1695741086.8551722-CDS-S-ischiensis_contig9:3153369..31535431695741086.8551722-CDS-S-ischiensis_contig9:3153369..3153543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 3153370..3153543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20777.1

>prot_S-ischiensis_contig9.20777.1 ID=prot_S-ischiensis_contig9.20777.1|Name=mRNA_S-ischiensis_contig9.20777.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
SVHGRGGGGDGGGGGGDDAGDSDAICRCLGNVFTCLATAYLPFAELPGVA
EHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGG
GGDYASPAGLHRSVMEEGLRQAILLLVARTEYPGNGGDEAWACMAEEDRD
ELTAFREQVRELLRTIALPAEDNASPNGDRPAPPSSKASPNGHGNASPAS
AVDSPCNAFGDQPSPS
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mRNA from alignment at S-ischiensis_contig9:3150009..3153544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20777.1 ID=mRNA_S-ischiensis_contig9.20777.1|Name=mRNA_S-ischiensis_contig9.20777.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3536bp|location=Sequence derived from alignment at S-ischiensis_contig9:3150009..3153544+ (Schizocladia ischiensis KU_0333)
TCCGTCCATGGACGCGGTGGCGGCGGCGATGGCGGCGGCGGCGGCGGCGA
TGACGCCGGCGACAGCGACGCGATTTGCCGCTGCCTGGGGAATGTGTTTA
CGTGCCTGGCGACGGCGTACCTCCCCTTTGCGGAGCTGCCGGGGGTGGCG
GAGCACTGGGAGGCGCTCATGCAGGTGTGTTTTGTTATCCCTTTTGCCCC
TGGTAAATTGGACTTCCACACTAAAACCCTATGACTATGCGGACCCCAGG
GGTACAAGGGTTAAATGTGGTGTGATGCCGAACTCCGGTACCATGATGTT
AGAACGACACATATGGCCTCTTGTCCCCTATGCAAGACTTTTATAGCCCC
TTGTACTGTAGCACTCTCAGTCTAGGAGATATCTCTACTGTAGCTCCCCT
CAGTACACCTTGGGTATTTCTGCTATTTCTGCCATTGCCAGCACAGGCCC
CCAGGCCTCGCTGCCCTCTCTAGCGGCGCTAATGAACAGTGTGTTACCAC
GAGACGAGGTACTTGGACACATTTGATGTGATGCCGAGCTCCGGTACATC
CCCCCGTTCCCCCCGCCCACCACCCCCCACCCCTCGTCCTCCTCCCCTGC
TCGAGTACACGCTCATCCCCTGGTGAGCTAAGCCAGGGCCACCGTTGGAG
TCCTCAGTAATGTGGCCGGCACCTCGCCTGCTGTTGTGTTTTTCTTGTCA
AGTCCAGTACCCCCTGCCCCCCCTCCTGTCTCTCGTCCTCCCCCCCCCTC
TTCCCCTTTCCCATGTACTCCTTCCCTGATGAGCTAAGGAAGGGCCACTG
TTGAGGTCTTTAGCGACGCGGCCTGCACCTTGGCTTGTGTTTTTTGTCAT
CCTGTTACGACTGTAGCCCCCCTCCCGTGGTGAGCTAAGGAAGGGCCAGT
GTTGAGGTCTTTGGTGACGTGGCCCGCACCCCGACCCGTGCTGTTGTTTT
CATCCTGTTGCTACTGCTGTTGAGAGTGCACATTGCATCACCATCACATC
ATCTACCATATCACGCACACCACACGCTGTGATGTGATGTGATGTGATGT
CGAACCACTTTACCCTAGAGTACACATCACATCACATCGCTTGTGATGTG
GTGTGATGTGAAACCACTTTGCACTACAGTAGAGTACACATCACATCACA
GCATGTGGTGTGCGGGTCGGGTCGCACGTGTTGGAACCCGCCACATCACA
TCACATACATCACATCAGATCATATCACATCAGATGTGTCCCGCGTCCGC
CCTCCAAAGGCAGGCTCACCACACTTGTACATAACTGCTCGTAACAGCCG
TCAGTACTGTAGCCCCATCAAGTAACCGCCGTAGCCCCCCCTGAAACAGG
ATAACCACTAAGCAATACGAGAAAACTCAATCTCACACACGTGCGATTGT
ACCTCGCTGCCTACAATTTTTGTGAAAGTATTGTGATGGTACGCGAGCTC
CGGGCCCAGTCCCAACAACCTGAGGTGGGGACCTCACCAGAAGCCCTTGT
TTATATGAATCACCCCATTGAACGTGCTGTATATTTGTTCTGGTTCGCTC
GCTCGCCACGGCGGCGGTTCTTCCAGACTCTGGGATGGCTGGCGGAGTAT
CCTTCCCTGGACATCGCTTCTCTCACCCTCGATTACTGGGGCCGCATGGG
GCAGCGTCTCTGCCTGGTCCCGGGCCCCGGGGGCGCGGAGGCCACTGGCG
GCGGTGGTGATTATGCCTCCCCTGCCGGGTTGCACCGGTCTGTGATGGAG
GAGGGGCTTCGGCAGGCCATCCTGCTGCTGGTGGGTTTCAGTGATGGGAT
ATTGATCAGTAGATAGTTATCGGGCTTGACTGATTTTGTGGGTGGCGCTA
CAAACTACTTGGATTTATTGTGGGTCAGGCTGTCGAATATCGACTATTGA
TAGATATATACGAGTAGATCAGTACTGTCCATAAATAGGTTGATTTGCTT
AGATATTCCATCGCTGGTGGGTGTTGTGTGTGCGTGTGTGTGTGCGCGCG
TGCGTGTGGACTTGCGGGTGTTTGCCGTGGGTGTTGCGTCCTGCTTGGTG
TGTGCTTGTGTGTTGTGTGTTTGTCGACTTGTGTTTTGCCTGCGTGTGTG
CGTGGGTGCGTGCGTGCGTGCGTGTATGTGTGTGTGTGGGTGTGTGCATG
TCTACGTGTGCGCACGTGCGCACGCACACGTGAACACGTGTTGTCTGGAT
GGTGTGTCTGAGTGCGTGCATGTTTGTTTGTCTCTGTGCATGCGCGTGTA
TGCATGTGTGTGTGAGGTGTAACCGGAACAAACACGGCTCTGGAGCTCGC
CAAGGTGGGATCATGGGGGGGCCACGCTTTGGCAGCAGCCGTTCGAAAGA
ATTCTTTCAAAGCTTGGAGGCGTGTTGTGGCGATGTCCTCGGGGTTTGCA
GGGGCATTATTTGGGCAGGATAGTGAATCTTATTTGCCCCCCTTTGGCCG
TAGCCAGCTTCCCCAACAAGGAGAGGTTGGCTGTAGCCAGCCTCCTCAAC
AACAGAGGAGACAGTGCTCCTTCCCATAGGGTCGCCCCTGTTATGTGATG
TCAAACTACAGCACTTTGCTGTAGAGTGCACATCACATCACGTCATTTCA
CATCATTTCACATCACATCCCGTAGGTTCACCCCTGTGGGGCGCCGGGGT
GGTCAACGGTGTTGTGGCTTCGGCAGGCAACTCATGAGTACCCCCGAAAA
CATGATGGGAAACAAACGGAAACGAACACGAAAAGGTGGCGAGGACAGAA
TACCCTGGGAACGGCGGGGATGAAGCGTGGGCGTGCATGGCCGAAGAGGA
CCGCGATGAGCTCACGGCCTTCAGGGAGCAGGTACAGTACAGTACAGTAA
AGTACAGTACAGTAGAGCACCTTCTGTTGCATGTACGGTACTGTACTTGC
AGAAACATGGGCACTTGAACAAGTGTGTGCATTCACGCCGAACGGAGCTT
GCCGCACACCCCCTTGTACAGCACAGTATGGTACAGTACTCGCACAGCCC
AGTACAGTACAGTACGGTACAGTGCAGTACAGCACCTTCTGTTGCATATA
TGGTACTTCGAAGTACTTGCAGAAACACGCGCACTTGAAGAAGAGCGTGT
ATTCACGCTGAACAGAGCTTGCCGCACAGCGCCTTGTACAGCACAGGACA
GGACCGCGTATATACAGCGCCGCACATTTCATCCTGGGCAAGTCCAATTC
CCCCAGATTACTTTTACTTCCTTAGCAGCGCCGGGCCGTGACCCCCACCC
ATGCGTCGGCTTGTGAAGCGAGGACCGCTGTACAACGAGTTACCTACCAC
CGCCCGTATTGTGCTATACTTCGGAAAATTAACATCCAGCATGACGCCAC
CCCTGCGCCAGGTTCGGGAGCTTCTCCGGACCATCGCTCTGCCCGCAGAA
GACAACGCCTCCCCGAACGGGGACCGTCCCGCCCCCCCCTCCAGCAAAGC
CTCCCCGAACGGTCATGGCAACGCTTCCCCCGCCAGTGCCGTCGACAGCC
CGTGCAATGCTTTCGGGGACCAGCCATCGCCCTCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:3150009..3153544+

>mRNA_S-ischiensis_contig9.20777.1 ID=mRNA_S-ischiensis_contig9.20777.1|Name=mRNA_S-ischiensis_contig9.20777.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1296bp|location=Sequence derived from alignment at S-ischiensis_contig9:3150009..3153544+ (Schizocladia ischiensis KU_0333)
TCCGTCCATGGACGCGGTGGCGGCGGCGATGGCGGCGGCGGCGGCGGCGA
TGACGCCGGCGACAGCGACGCGATTTGCCGCTGCCTGGGGAATGTGTTTA
CGTGCCTGGCGACGGCGTACCTCCCCTTTGCGGAGCTGCCGGGGGTGGCG
GAGCACTGGGAGGCGCTCATGCAGTCCGTCCATGGACGCGGTGGCGGCGG
CGATGGCGGCGGCGGCGGCGGCGATGACGCCGGCGACAGCGACGCGATTT
GCCGCTGCCTGGGGAATGTGTTTACGTGCCTGGCGACGGCGTACCTCCCC
TTTGCGGAGCTGCCGGGGGTGGCGGAGCACTGGGAGGCGCTCATGCAGAC
TCTGGGATGGCTGGCGGAGTATCCTTCCCTGGACATCGCTTCTCTCACCC
TCGATTACTGGGGCCGCATGGGGCAGCGTCTCTGCCTGGTCCCGGGCCCC
GGGGGCGCGGAGGCCACTGGCGGCGGTGGTGATTATGCCTCCCCTGCCGG
GTTGCACCGGTCTGTGATGGAGGAGGGGCTTCGGCAGGCCATCCTGCTGC
TGACTCTGGGATGGCTGGCGGAGTATCCTTCCCTGGACATCGCTTCTCTC
ACCCTCGATTACTGGGGCCGCATGGGGCAGCGTCTCTGCCTGGTCCCGGG
CCCCGGGGGCGCGGAGGCCACTGGCGGCGGTGGTGATTATGCCTCCCCTG
CCGGGTTGCACCGGTCTGTGATGGAGGAGGGGCTTCGGCAGGCCATCCTG
CTGCTGGTGGCGAGGACAGAATACCCTGGGAACGGCGGGGATGAAGCGTG
GGCGTGCATGGCCGAAGAGGACCGCGATGAGCTCACGGCCTTCAGGGAGC
AGGTGGCGAGGACAGAATACCCTGGGAACGGCGGGGATGAAGCGTGGGCG
TGCATGGCCGAAGAGGACCGCGATGAGCTCACGGCCTTCAGGGAGCAGGT
TCGGGAGCTTCTCCGGACCATCGCTCTGCCCGCAGAAGACAACGCCTCCC
CGAACGGGGACCGTCCCGCCCCCCCCTCCAGCAAAGCCTCCCCGAACGGT
CATGGCAACGCTTCCCCCGCCAGTGCCGTCGACAGCCCGTGCAATGCTTT
CGGGGACCAGCCATCGCCCTCCGTTCGGGAGCTTCTCCGGACCATCGCTC
TGCCCGCAGAAGACAACGCCTCCCCGAACGGGGACCGTCCCGCCCCCCCC
TCCAGCAAAGCCTCCCCGAACGGTCATGGCAACGCTTCCCCCGCCAGTGC
CGTCGACAGCCCGTGCAATGCTTTCGGGGACCAGCCATCGCCCTCC
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