prot_S-ischiensis_contig9.20777.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig9.20777.1
Unique Nameprot_S-ischiensis_contig9.20777.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length216
Homology
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BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 7.700e-21
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 0 
Query:   22 SDAICRCLGNVFTCLATAYLPFAELPGVAEHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGGGGDYASPAGLHRSVMEEGLRQAILLLVARTEYP-----GNGGDEAWACMAEEDRDELTAFREQVRELLRTIALPA 170
            S+ +CRCL  VF   A AYLP    P +  HW +L+Q +  + E+PSL+IASL L++WG +G+ L          A GG G  + P       +EE +R A  + + R  YP     G GG      M E+ RDEL  FR+QV++LL+T+ +PA
Sbjct:  314 SEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLEHPSLEIASLALEFWGMLGELLTET-------AAGGRGPRSPP-------LEESVRHACRVSMLRARYPSDESGGLGG------MDEDSRDELEDFRDQVQDLLQTLIMPA 447
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BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.050e-20
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = 0 
Query:   22 SDAICRCLGNVFTCLATAYLPFAELPGVAEHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGGGGDYASPAGLHRSVMEEGLRQAILLLVARTEYP-----GNGGDEAWACMAEEDRDELTAFREQVRELLRTIALPA 170
            S+ +CRCL  VF   A AYLP    P +  HW +L+Q +  +  +PSL+IASL L++WG +G+ L          A GG G  + P       +EE +R+A  + + R  YP     G GG      M E+ RDEL  FR+QV+ELL+T+ +PA
Sbjct:  308 SEEVCRCLAMVFASAACAYLPGILKPELGGHWSSLLQIMVGMLNHPSLEIASLALEFWGMLGELLTET-------AAGGRGPRSPP-------LEESVRRACKVSMLRARYPSDDCGGLGG------MDEDSRDELEDFRDQVQELLQTLIMPA 441
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSA2_ECTSI7.700e-2138.96Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE1.050e-2038.96Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 16..173
e-value: 4.7E-7
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:3150009..3153543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20777.1mRNA_S-ischiensis_contig9.20777.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig9 3150009..3153544 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig9.20777.1 ID=prot_S-ischiensis_contig9.20777.1|Name=mRNA_S-ischiensis_contig9.20777.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
SVHGRGGGGDGGGGGGDDAGDSDAICRCLGNVFTCLATAYLPFAELPGVA
EHWEALMQTLGWLAEYPSLDIASLTLDYWGRMGQRLCLVPGPGGAEATGG
GGDYASPAGLHRSVMEEGLRQAILLLVARTEYPGNGGDEAWACMAEEDRD
ELTAFREQVRELLRTIALPAEDNASPNGDRPAPPSSKASPNGHGNASPAS
AVDSPCNAFGDQPSPS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like